CmoCh16G007910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G007910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 4010862 .. 4011236 (-)
RNA-Seq ExpressionCmoCh16G007910
SyntenyCmoCh16G007910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACATGAATTCCAAGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTCTTCTCAGTGGTAATACTTTCTTTGATCATATGTTTTTTTTTACATTACTTATAAGAGTGTTTATTGAGCATAAAGATGTTGGATTTTGAATGTAGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGATATTGTACCTTCCAAATCTCTCCTTTTAAGAATTTGTTGCTTAAAAC

mRNA sequence

GAAACATGAATTCCAAGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTCTTCTCAGTGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGATATTGTACCTTCCAAATCTCTCCTTTTAAGAATTTGTTGCTTAAAAC

Coding sequence (CDS)

ATGAATTCCAAGTCCATTTCAACCATGATGGTTCTTCTTGTTTTCCTTCTTCTCAGTGGAGAAGACATGATGGTGAGGAGTGTGGATGGGAGGATATGCCAGAGGGTGTTGCCAATATCCACATACCAGGTATGCTACGATGAATACTGCATGAGGCTATGCCGAGGTCAGCTTGGACCCGATGCCGATGGGCTTTGTTTGGGCGTTTACACATGTAACTGCACATATCCTTGTTGA

Protein sequence

MNSKSISTMMVLLVFLLLSGEDMMVRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Homology
[Close]
BLAST of CmoCh16G007910 vs. NCBI nr
Match: KAG6577324.1 (hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 76/114 (66.67%), Postives = 77/114 (67.54%), Query Frame = 0 

Query: 1   MNSKSISTMMVLLVFLLLS------------------------------------GEDMM 60
           MNSKSI TMMVLLVFLL+S                                    GEDMM
Sbjct: 1   MNSKSILTMMVLLVFLLISGEGMMVRSGNWRICRRVLPIFTYQECYDEYCLRLCRGEDMM 60

Query: 61  VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 79
           VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC
Sbjct: 61  VRSVDGRICQRVLPISTYQVCYDEYCMRLCRGQLGPDADGLCLGVYTCNCTYPC 114

[Close]
BLAST of CmoCh16G007910 vs. NCBI nr
Match: KAE8653553.1 (hypothetical protein Csa_007475, partial [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0 

Query: 1  MNSKSISTMMVLLVFLLLSGEDMMVRSVDGRI-----CQRVLPISTYQVCYDEYCMRLCR 60
          M S  IS   ++L+FL+ SGE+MM+  V G +     C R LP+S    C +  C  LCR
Sbjct: 10 MKSNIISA--IVLLFLIFSGEEMMISRVQGIVWPPAKCYRTLPLSDAGTCVNTQCENLCR 69

Query: 61 GQLGPDADGLCLGVYTCNCTYPC 79
           Q+     G C G + C C + C
Sbjct: 70 SQIKAVDIGTCFGAHKCLCAFTC 90

The following BLAST results are available for this feature:
BLAST of CmoCh16G007910 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G007910 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G007910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577324.11.4e-3166.67hypothetical protein SDJN03_24898, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8653553.11.0e-0537.35hypothetical protein Csa_007475, partial [Cucumis sativus][more]
BLAST of CmoCh16G007910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G007910.1CmoCh16G007910.1mRNA