CmoCh16G007730 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G007730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L29, chloroplastic-like
LocationCmo_Chr16: 3886200 .. 3889489 (+)
RNA-Seq ExpressionCmoCh16G007730
SyntenyCmoCh16G007730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGAAGGGGAGAGAGCTTATCTTCTTCTTGAATCGTAGCTGACTGAGCGAACTCTACGAACACACTCTGAACATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTGTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTTCCCTCGTCGATGGATTCTTAGTTAATTTTGAGTTCAATTGAAATGTGGCTATTATGTTCGTCTCAAACTTATACGTTTTACTGTCTCCTATCCTCCATTTTTTTGCTTATCTGTGCAAGATTTATTGGTAGGATTCAAGTTTAGAGCTCATTGGTTTTTATTGGGGATCTAAGATTATTGGCTATTGTTTGCCGCCAAAAGAGAAGAAGTGTAGAAATAGATAATCTGCAGACTAAAATAATTCTAGAACTATACATTTTTGTAAGAATCAATTTAGGATTTAGATTTGAGTTGACAGTCTAGAGAGATGTGTTAGATGAACACCTCTACACAATGGTATGATATTTTCCACTTTGAGCATAAGTTCTCGTAGCTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAAGGGAGACTTTCATCATCCAACACTTCCCATCGAACAAAGTACACCTCCCCTTAATTGAGGCTCGACTCCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAAGATTTACCAATCTATTGGTACGACTAAGTTTAGGGCATGACTCTGATACCATGTTAGACGAACACGACTCTCCACAATGGTATGATATTGTACACTTTGAGTATAAGCTCTCGTGGCTTTGCTTTGGGCTTCCTCAAAAGGCCTCATACCAATAGAGAGAATATTCGTTGATTATAAACCCATAATCATTCCTAAATTAGCGGATGTGGGACTTTCATCATCCAACGAGATGAACTAAAACAATATTTCACTATGTTTGGAAAAAGTTTCAGAAGTAGAAGTTGCATTTAGAGTAAGATAGAGCCAATTAGAATGTGCTCTGGAACGTAGAAATCCAATCAGAATCAGAAAATGAATTGAAAGCAGGATTTTTAACACTAACAACTTCATATTGAACTAAGATTGACTCCAAATACAACTATTAGAAATAGCACCTGTGGATTTTACATTTTCGATACGATTAGGGGTATGTTCTAAAAACTCTTGAATGTCTTCATGCTAACATTTTGTTTAAGATTCCCAGAATGCCTGAAGCATGAATGAGCCATAAATGTGGAAATCTTGATTCAGTTTGGGTTTAGATTAACTTATCTTTTTCATATGAAGTTGGTTAATTGGAGAGGCCAAACCTATTTTGATCATGGAAGGATCACAATGTCTAATGCATAAGAGAGAGGGTTTTGCATTTGAACCATATGTAGCCTTCTCATGACTTCTATACCAAAACTTCTGCATGCTTGGTGCTTAATCTGGATATCGGAATTGTCTTATGGGCCTCTTACGGTTGCACTGAACAAAGTCCTGAAATGACGATGTAACAGCCCAAGTCCATTAAGTCCACCGCTAATAGATATTGTCCTCATTAGGTTTCCCCTTTCGGACTTCCCTTTAAGGTTTTTAAAACGCGTTTGCTAGGGGAGGTTTCCACACTCTTATAAAAAATGATTCGTTCTCTTCCCTAACCGATGTGGAATCTCACAATCCACTCACCTTCGAGACTCAACGTCCTCACTGGCACTCGTTCCTCTCTCCAATCGATATGAGATCCCATAAATGAGATGTTGTTGAATGGTAAAAATTTATTTACACATTATGAGTTCAGTAAGACTAGCGTCTTCTTTAGAATTCACATATGATTATGATGGAGGGATGTTCTGCACTGCAATTGTGGTAAGACTTGCCCATTCCCATAGTTTTATGGTGTCAAGTCTGACATTTAGGTTGCAAACTTCTTGCATCTCTGGTCTAATCCCACGGCGTCATGATAAGGTCTTGAGATCTTTGTAGTTACCCTCTAAAGTCTTGGTTCAAAGCCCCTAACTAGGTAACTTAGTACTTGGATTTTGCCTCCAATGCCCACTTCGGAAAAAAAAAAAAAAAATTATTCAAGAGGTCGCTATGGTTGCATGTAGATTTAATAGTTTGCATGCTTCGTAGCAACCAGTAGATACTAGTAGATGATATAAATTCAAGGTATTTCTTTACATCGAATGGAAAAAAACTTTCCGCCGCATTGTGGCTGCTTCACCGAATAATTTTACCTACTTCGAAGTAGACAAAGCCTCCTCAGAGATATGGGTCATGAACAACGGAATGGTGCTTGATAATCTCGGTTCTCAATAAACTCGGTGCCTAACAACGTTTCAACGACTCAATATTGCGAGATCAACTAATATCTATTGAGTATTGCTGATGCAGGACAGTTGGGAAGTTTATATCATTCTTATAATTAATCTTCATCTACTTTAAGATTGTAACATCGCAGCTATATAACCAATGTTTTGGACTTGCTAACAACTTCGATTTCGTATCGCATACTCCACGAAACTTGGAATTTTGAATCGTTAATTTGTTATTGGTTGTCCGATGACAGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAGAAATCTGCTTGATCCAATCAGATACGCTCTCAACCAATATTGTAGCTTTATGAGTGTTTGAAGTTGTTGAAATTGCTATTTAAACAACGTTTTATAAGAAGATGAAAATTCTGATCATGAACTTAGCTTGTGCACAAATGGAATAGAGATTTCAAGGGGATCGTGTTGCATTTGTTAGATTGAATGGCACGATGACCTATATGGGTCACGACCTCATGTATTTATAGATGTGTATAATGAAGATTATATTCCAAATCTATGATTTGATAACAAACCATGAAATCATAGATTAGGTAACAAACCCTTCAAATCATAAATTTGGTAGTAAATCCTAGA

mRNA sequence

AATAGAAGGGGAGAGAGCTTATCTTCTTCTTGAATCGTAGCTGACTGAGCGAACTCTACGAACACACTCTGAACATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTGTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAGAAATCTGCTTGATCCAATCAGATACGCTCTCAACCAATATTGTAGCTTTATGAGTGTTTGAAGTTGTTGAAATTGCTATTTAAACAACGTTTTATAAGAAGATGAAAATTCTGATCATGAACTTAGCTTGTGCACAAATGGAATAGAGATTTCAAGGGGATCGTGTTGCATTTGTTAGATTGAATGGCACGATGACCTATATGGGTCACGACCTCATGTATTTATAGATGTGTATAATGAAGATTATATTCCAAATCTATGATTTGATAACAAACCATGAAATCATAGATTAGGTAACAAACCCTTCAAATCATAAATTTGGTAGTAAATCCTAGA

Coding sequence (CDS)

ATGATGAACCTTTCAATTGCTTCGCCTTCGAGCGTTGCTATACCTGCAAAGTTTCTTAGCTCGACCTCCAAATCATCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTGTCGCGTTCCTCCTAAAGCAGCATGTACCGGAGGCCGCAATTCGCCGGTGGTAATGATGGCCAAGAGGGAGGAGGAGTTGAAAGATATCAGAGCGAAAACTACTGAGGAAATAAACGAAGAGGTCGTCGATCTCAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCAGCCCGCAATGAGTTTAAGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACCGTAAAACGTGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGTTGTCAAGAAAGTTAGATAGAAAGTGGAAGAAAAGTATTGTGGTCAGACCACCTCCATCTCTGAAGAAGTTGCGAGAGGAAGAAGAAGCAGCTGAGAAATCTGCTTGA

Protein sequence

MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
Homology
[Close]
BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMM 60
           M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL +EEEAAE++A
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKL-QEEEAAEEAA 167

[Close]
BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.1e-36
Identity = 90/152 (59.21%), Postives = 113/152 (74.34%), Query Frame = 0 

Query: 23  SKSSFNGLQI-------RFPFSCRVPPKAACTGGRNSPVVMMAKREEELKDIRAKTTEEI 82
           +KSSF+GL++             + PP         S VV+M K+E+ELK++R KT E++
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTPP---------SSVVVMVKKEDELKELRTKTNEQL 85

Query: 83  NEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKL 142
           NEE++ LKGEL MLRLQ+SAR  FK S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKL
Sbjct: 86  NEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKL 145

Query: 143 DRKWKKSIVVRPPPSLKKLREE---EEAAEKS 165
           D+ WK+SIVVRPPPSLKKL+E+   E  AEK+
Sbjct: 146 DKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 91/159 (57.23%), Postives = 119/159 (74.84%), Query Frame = 0 

Query: 2   MNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT---GGRNSPVVMMA 61
           M+L+ ASP + +IP    +    ++F  +++    + R    A  +     R + +V MA
Sbjct: 4   MSLAAASPLA-SIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMA 63

Query: 62  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 121
           KRE+EL++IRA TTE++ EEVVDLKGEL +LRL++SAR EFK+SEF RMRKRIARMLTVK
Sbjct: 64  KREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVK 123

Query: 122 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           REREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 124 REREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match: B8HMR2 (50S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 21/63 (33.33%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 63  ELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRERE 122
           ++KD+   +  E+  +++DLK +L  LRLQK+ R E K  +F+ +R ++A+++T++R+R+
Sbjct: 5   KMKDLLDLSDAEVETQILDLKRQLFQLRLQKATRQEVKPHQFKHLRHQLAQLMTLERQRQ 64

Query: 123 IEE 126
           + +
Sbjct: 65  LTQ 67

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BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 65  KDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKREREIE 124
           K+IR  TT EI E++   K EL  LR Q +     +++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 166
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 165

[Close]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.9e-75
Identity = 159/162 (98.15%), Postives = 160/162 (98.77%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAAC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 162

[Close]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 149/164 (90.85%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 165
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEA 164

[Close]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.8e-69
Identity = 148/164 (90.24%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 165
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEA 164

[Close]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match: A0A5D3CWZ4 (50S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00600 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.6e-65
Identity = 146/166 (87.95%), Postives = 156/166 (93.98%), Query Frame = 0 

Query: 1   MMNLSIAS-PSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACT-GGRNSPVVMMA 60
           M+NLS+AS PS++ IP+KFL+STSKS FNGLQIRFPFS  VPPK A T GGRNS VVMMA
Sbjct: 1   MINLSVASLPSALPIPSKFLNSTSKSFFNGLQIRFPFSFCVPPKTATTGGGRNSSVVMMA 60

Query: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVK 120
           KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRI+RMLTVK
Sbjct: 61  KREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRISRMLTVK 120

Query: 121 REREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 165
           REREIEEGVGKR+SRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REREIEEGVGKRMSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA 166

[Close]
BLAST of CmoCh16G007730 vs. NCBI nr
Match: XP_022929361.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 302.4 bits (773), Expect = 2.4e-78
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 166
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 165

[Close]
BLAST of CmoCh16G007730 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAE 162

[Close]
BLAST of CmoCh16G007730 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 159/162 (98.15%), Postives = 160/162 (98.77%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           M+NLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFS RVPPKAAC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 162

[Close]
BLAST of CmoCh16G007730 vs. NCBI nr
Match: XP_023551880.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.0 bits (733), Expect = 1.1e-73
Identity = 158/162 (97.53%), Postives = 160/162 (98.77%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSVAIPAKFLSSTSKSSF+GLQIRFPFS RVPPKAACTGGR SPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFHGLQIRFPFSFRVPPKAACTGGRISPVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAE 163
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEEAAE
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAE 162

[Close]
BLAST of CmoCh16G007730 vs. NCBI nr
Match: XP_022977189.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 2.7e-69
Identity = 149/164 (90.85%), Postives = 156/164 (95.12%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60
           MMNLSIASPSSV+ P+KFLSSTSKSSFNG QIRFPFS RVPPK A TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120
           EEELK+IR KTTEEINEEV+DLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 165
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEA 164

[Close]
BLAST of CmoCh16G007730 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-48
Identity = 111/168 (66.07%), Postives = 139/168 (82.74%), Query Frame = 0 

Query: 1   MMNLSIASPSSVAIPAKFLSS--TSKSSFNGLQIRFPFSCRVPPKAACTGGRNSP-VVMM 60
           M++LSIA+P + AI  +  +S  ++ SSF+G++I+   S RVP  A  +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTV 120
           +KRE ELK+IR+KTTE++ EEVVDLKGEL MLRLQKSARNEFKSS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKSA 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL +EEEAAE++A
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKL-QEEEAAEEAA 167

The following BLAST results are available for this feature:
BLAST of CmoCh16G007730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP35.2e-4766.0750S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822483.1e-3659.2150S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI62.7e-3557.2350S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
B8HMR22.4e-0433.3350S ribosomal protein L29 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39... [more]
Q49ZG03.2e-0446.7750S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
BLAST of CmoCh16G007730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EMX41.2e-78100.0050S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JCM67.9e-7598.1550S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1IQR31.3e-6990.8550S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FMW53.8e-6990.2450S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5D3CWZ42.6e-6587.9550S ribosomal protein L29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
BLAST of CmoCh16G007730 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929361.12.4e-78100.0050S ribosomal protein L29, chloroplastic-like [Cucurbita moschata][more]
KAG6577307.12.5e-7598.7750S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022985118.11.6e-7498.1550S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_023551880.11.1e-7397.5350S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022977189.12.7e-6990.8550S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
BLAST of CmoCh16G007730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.13.7e-4866.07Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 63..126
e-value: 4.6E-15
score: 57.3
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 64..124
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 1.4E-14
score: 53.8
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 2.9E-16
score: 57.2
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.602084
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..162
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..162
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 3.55141E-16
score: 66.7422

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G007730.1CmoCh16G007730.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome