CmoCh16G007690 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G007690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 3860193 .. 3862226 (-)
RNA-Seq ExpressionCmoCh16G007690
SyntenyCmoCh16G007690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCCATATCTTTTCTTTCCCCAGATTGTACACTTGGAACGTGGCACCAACTCGACCATTACAGAATGAGAGTCCTATCGGTTCGATGAAGGACATCATGAAAATGTTTCTCAATGAAGCTTAGTGCACTTCCTGAGAAAAGAGGAAATAATGTAATTTACGGCCGAAGAGAGGAAACAAGTCTGTAGCAATTGGCACACACGTAGAGGTATGAAGACTACTTTTATTCTATTTCTTTCATTAAATACTAAGCTTGTTCTCGTTTGCCTCAAAACAATTTATAAAAACCAATAATGTAGATCCACTTATATGGTTAAACTGAACAAGCTTAGTATTTCTTGGACATTTCCTTTCAGATCTAGGACATTGCCTGCGCTTGTCGGGGATAATCTTGCTATTTAAAGGGACCACTCGAGCTAACGAAAGGTTTGCTCAAATTAATCATACTTTCTTAGACTACTTGTGGTTGTCTGCTTGAGAGTAGTTATTGTGTAAGGAACTTGTGTAAGGACTTGTTATTGTGGAACTTGCATATTAGGAACACATGGAAAAGGTGTAATGTCAACATGTATCGAGACGGGGGAGATTGAGGGGTTTAAGGTGGGGAATGAGTCGATTCGCCTTTGAGTTTGAAGATGACACTTTCCTTTTATATTCGGGTCAGGAAAAGTCGTTTGTTAATCCTAGTAGGTTTTTGTCGTTTTTTGAAGTGATTTTGACATTAAGATTACCAGGGTAAGAGCTCAAATAGTGACTTAAATTGCTGCACTCCAAGTTAAGCTTGGTTGTGAGGTGTGTCAGCTCACTTCTTCTTACTTGGGGTTGCCCTTAAGTGGTAATTCGAAGAGTTGGACCTTTTGGGATTCTTTGGTGGAAAAAAGGTCTTCTCTAAAGGGGAAAAAATCACTCTTATTCAGTCGATGTTGAGCGAGATCCGAAGCTATTTCATGTCTTTCTTTGAGACCCTGTTGGGGCGAGCGAGAAAATTGAGAGCGTTATGACACATTTTTTTGTGGGAGAGGACGAACGAGGGCGGAGGGCACCCCCAGGTCAGGTGGGAGGTAGTGTTGAAACCTATAAGTTTAGTAGTTTTGGGTAGTGACTGTGTCCTTCATCGGACCGAACATGCTAGGTAAAGCTCGAGGGTTCATTTTTAAAGGGGGGTGGGGGTGGGGGTGGTGGCGACGACTCTCCATGATTTGTAACAAAGATAACAAACGCCGTTACATTAATTAGTCTCGTGATGTCGTGATAGTTGAATCTCGAGGGTATTGGAGTAGCTTTACAAGGAACAATGTTTTTTTTGTTACCAGTTACTTATGAACCTTATAAAACGTTGACAGGTTTGTCGTTCACGTAGGGTCCGAACTTCATCGGTCGAGTGAATTGGCAAGTCGTAAGAAGGTACCATCGAAATGTTACGTTCTGGCTGTTACTCGTATTATGCTGGTTTGTTGTCCTGCTAGTTTCTACTCTATTTATTTATGTAACGATGCTTCAACAATTACTTCAGGAAAAGCTCAAAGTCAAGAGGCCATCCAACTTATAGTTCATGATTTTTTCAGAGTTGTAGGAGAAAGGGATGTTTCTCTTTGCATGGCAGCCAAATGATTTCAAGGTTATACCACTGAGCCAAACTTAACGATCTATTACGAGCCGGGGAAAGGAATGATCTCGACTACAAGGGTATTTGCTAGCATCAAAGCCCTTCATTATTATTAGTACGATGGGACGGAGGGCGCACTAACCCTTGATAGAAGCGTTGTCCTGAAGGACTAGTTGCTTCCTAAATGCCTCTTTGACTTTTATGTCTATATTTATTCCTCGACATAAGTTTCAGATACCTTTCTCTCATACATTCCATTGTAAAAAAACGACGAACATACCGTGGCAAACTCATCAAATAATTCTTCGGGGAGAAAGGGAGGTTTTGTTTGGTCGGTCTGGACTAATAGAAACTTGTCCAGAAAAGCGACCAATGGCTTCCTGAATGCCTCTTTTAACTTTATATGTCTATATTTACTCCTCG

mRNA sequence

ATGTCCTGCCATATCTTTTCTTTCCCCAGATTGTACACTTGGAACGTGGCACCAACTCGACCATTACAGAATGAGAGTCCTATCGAGAGGAAACAAGTCTGTAGCAATTGGCACACACGTAGAGATCTAGGACATTGCCTGCGCTTGTCGGGGATAATCTTGCTATTTAAAGGGACCACTCGAGCTAACGAAAGGTTTGTCGTTCACGTAGGGTCCGAACTTCATCGGTCGAGTGAATTGGCAAGTCGTAAGAAGGAAAAGCTCAAAGTCAAGAGGCCATCCAACTTATAGTTCATGATTTTTTCAGAGTTGTAGGAGAAAGGGATGTTTCTCTTTGCATGGCAGCCAAATGATTTCAAGGTTATACCACTGAGCCAAACTTAACGATCTATTACGAGCCGGGGAAAGGAATGATCTCGACTACAAGGGTATTTGCTAGCATCAAAGCCCTTCATTATTATTAGTACGATGGGACGGAGGGCGCACTAACCCTTGATAGAAGCGTTGTCCTGAAGGACTAGTTGCTTCCTAAATGCCTCTTTGACTTTTATGTCTATATTTATTCCTCGACATAAGTTTCAGATACCTTTCTCTCATACATTCCATTGTAAAAAAACGACGAACATACCGTGGCAAACTCATCAAATAATTCTTCGGGGAGAAAGGGAGGTTTTGTTTGGTCGGTCTGGACTAATAGAAACTTGTCCAGAAAAGCGACCAATGGCTTCCTGAATGCCTCTTTTAACTTTATATGTCTATATTTACTCCTCG

Coding sequence (CDS)

ATGTCCTGCCATATCTTTTCTTTCCCCAGATTGTACACTTGGAACGTGGCACCAACTCGACCATTACAGAATGAGAGTCCTATCGAGAGGAAACAAGTCTGTAGCAATTGGCACACACGTAGAGATCTAGGACATTGCCTGCGCTTGTCGGGGATAATCTTGCTATTTAAAGGGACCACTCGAGCTAACGAAAGGTTTGTCGTTCACGTAGGGTCCGAACTTCATCGGTCGAGTGAATTGGCAAGTCGTAAGAAGGAAAAGCTCAAAGTCAAGAGGCCATCCAACTTATAG

Protein sequence

MSCHIFSFPRLYTWNVAPTRPLQNESPIERKQVCSNWHTRRDLGHCLRLSGIILLFKGTTRANERFVVHVGSELHRSSELASRKKEKLKVKRPSNL
Homology
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BLAST of CmoCh16G007690 vs. NCBI nr
Match: KAG6577303.1 (hypothetical protein SDJN03_24877, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.7 bits (361), Expect = 8.4e-31
Identity = 71/91 (78.02%), Postives = 77/91 (84.62%), Query Frame = 0 

Query: 1  MSCHIFSFPRLYTWNVAPTRPLQNESPIERKQVCSNWHTRRDLGHCLRLSGIILLFKGTT 60
          MSCHIFSFPRLYTWNVAPTRPLQNESPI+RKQVCSNWHTRRDLGHCLRLSGIILLFKGTT
Sbjct: 1  MSCHIFSFPRLYTWNVAPTRPLQNESPIKRKQVCSNWHTRRDLGHCLRLSGIILLFKGTT 60

Query: 61 RANERFVVHVGSELHRSS-ELASRKKEKLKV 91
          RANER    V S + R + ++  RK  K +V
Sbjct: 61 RANER----VRSAIDRVNWQVVRRKSSKSRV 87

The following BLAST results are available for this feature:
BLAST of CmoCh16G007690 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G007690 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G007690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577303.18.4e-3178.02hypothetical protein SDJN03_24877, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh16G007690 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G007690.1CmoCh16G007690.1mRNA