CmoCh16G007160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G007160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 3580836 .. 3582539 (+)
RNA-Seq Expression	CmoCh16G007160
Synteny	CmoCh16G007160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGGTTAGTATTTTGAATTTATTTACGGAAAAAATGCAGAAATATTTGATTCATGAGATTTCAATTTGAGAATTCCAATTCTTCACTTCTTTTCATCCCTCCTATTAATCTCACGAACGCGCAATGCTTTATGGATTCTTTAAACAGTAGCATCATGATTTTTTTTCATATCTAAAGCTCCAGATTCTAATATCAATCCTCATTCAAATACTCGCATTTTGTTATCAAAATCATTAAGAAATTACTGTTTGATCTTACAGTTAGGTTAGGCAATAAGATTTAAGAAAGAGTTTGATCATCATCAGGCTTGCAATTTGAGTAGTATGCACACATTCATTCACTATTTAATTATCCGCTGCCTAGTTTTCCAATGTTTCGATTCTTTTATATCCGATGATCTGATATCAACATTTCTGAATTGTGGAACTGTGAATGAAAGTATTCATCTGTATTTTCAAGCTGCTAGGCTAGTTTATGGCGATGCATAGTTCTTTTACTGAAAGATTTTCAAGTTTTTCCAGTATTGTAATTTCTTAATTGTGAATTCCAAGCTATTTGGCGATGGATATTGGACGTTGATCATGGCCGGAAATGGAATCTGAAAGACCTCACAACTCATTCTAATCTGTCTATGATGAATTCAAGGTTTGAAGTACTCCTCAACTGAATTTACAGCATTTCTCTTGCGATCTTCATAGAAACGTAATTATGCAACTGTGTGGTACTAGCTCTATTTGGTAGGGATGCATGCCTTAGTGCTTCGATTCTTCTTACAGATTGAATCCATAGAATGTCGGACTACTTAGTTTCACCATGATCCGTTCTTTGTTATTACCAAAATTGTTTGTTTATGGTCATCTGATCTTGTTCCATCAAAGTTTCAGGCAAGATCTACCCATATACTTCAAAATTATTATGTCTTTGGAAGATCTGAATAGAAACGAGTGTCAGCGAGGATATTGGGCTTGGAAGGAGAATAAATTGTGAGATCCGATATGGAGAGGAGGGGAGAGGGGAACGAGTGCTAGCAAGGACTCTGGGCTCCGTCGGGGAGTGGATTGTGAAATTCCACATCAGTTGGAGAGAATAACGACATCGGAGAGGGAACGAGTGCCGGCGAAGATGTTGGGATTCGAAGGGAAGTGGATTGTGAAATCCCATATTGATTGGAGAGGATAACGAAATCGATTGGAGAGGGAAATAAGTATCAACGAGGACGCTGAGTCCAGGGTAGAGTGTGAGATCATACATCTGTTTGATAAGAGAACAAAACATTTTTTTTTTTGTAAGGGTGTGAAAATTTATCTCTAGCAAACATTTTTGTAAGGGTGTGAAAATTTAACATTATTGGTAGGAGTGTGAAAATTTCTCTCTAACCGAAACATTTAAAATATTAAAATCTCTTTCACTCTTACTGAACCATTTTTTATAAAAGTGTGAATATCTATTGATATATACGAACAGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA

mRNA sequence

ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA

Coding sequence (CDS)

ATGGTCTCTGCCTTTTTCTTCTCACTTCCGCTGGCGAAGAAATCGTGGCCTCCATTGATCTCTGGTGGCAGAACCACCGTTTCTTCATGTTCCCCTCTTCTCTCTCACCGTCTCTGCAACTCCTTCTTTTTCCGTAACAAGAACAACGCCCTTTGTCAGGAAGAAGGAGAATCAAAGCATTCAACCAATGGATTCTCTGTGGGCAATGGAAGCCGTAAAGCCACGAAAGAAAAGACAAGATGA

Protein sequence

MVSAFFFSLPLAKKSWPPLISGGRTTVSSCSPLLSHRLCNSFFFRNKNNALCQEEGESKHSTNGFSVGNGSRKATKEKTR

Homology

[Close]

BLAST of CmoCh16G007160 vs. NCBI nr
Match: KAG7015344.1 (hypothetical protein SDJN02_22979, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 24 RTTVSSCSPLLSHRLCNSFFFRNKNNALCQEEGESKHSTNGFS 67
          RTTVSSCSPLLSHRLCNS FFRNKNNALCQEEGESKHSTNGFS
Sbjct: 48 RTTVSSCSPLLSHRLCNS-FFRNKNNALCQEEGESKHSTNGFS 89

The following BLAST results are available for this feature:

BLAST of CmoCh16G007160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G007160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G007160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015344.1	2.3e-13	97.67	hypothetical protein SDJN02_22979, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh16G007160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G007160.1	CmoCh16G007160.1	mRNA