CmoCh16G006540 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G006540
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionsubtilisin-like protease SBT3.7
LocationCmo_Chr16: 3230904 .. 3231220 (-)
RNA-Seq ExpressionCmoCh16G006540
SyntenyCmoCh16G006540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGCTGATGATCAAAATTCCAAAGTATCATTCTAACTCTTCTGTTTTGCTTTTCATGATGGATGAAATCAAAATCTTTTAAGGATTTGACCATTTCTTTAGGTTCATATGTTTACTTGTGAAAGGCCGTACAATGATGTTAAGTTGACAACGGATTCTCACCATGAATTATTGGAAAGTGTTTTGGGAAGGTAAGCTCGTTCGGTTTTGTATTATTTTCTTTTTGGGTCGATTTTCGTTCGAGAAATTATGTGTTTATTCTGATCTTGATAATGAAGCAAGGAGAAGTCGTTGGAATCTATGGTGTATAG

mRNA sequence

ATGGCTGAAGCTGATGATCAAAATTCCAAAGTTCATATGTTTACTTGTGAAAGGCCGTACAATGATGTTAAGTTGACAACGGATTCTCACCATGAATTATTGGAAAGTGTTTTGGGAAGAAATTATGTGTTTATTCTGATCTTGATAATGAAGCAAGGAGAAGTCGTTGGAATCTATGGTGTATAG

Coding sequence (CDS)

ATGGCTGAAGCTGATGATCAAAATTCCAAAGTTCATATGTTTACTTGTGAAAGGCCGTACAATGATGTTAAGTTGACAACGGATTCTCACCATGAATTATTGGAAAGTGTTTTGGGAAGAAATTATGTGTTTATTCTGATCTTGATAATGAAGCAAGGAGAAGTCGTTGGAATCTATGGTGTATAG

Protein sequence

MAEADDQNSKVHMFTCERPYNDVKLTTDSHHELLESVLGRNYVFILILIMKQGEVVGIYGV
Homology
[Close]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match: A0A6J1JBL4 (subtilisin-like protease SBT3.9 OS=Cucurbita maxima OX=3661 GN=LOC111482985 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 1  MAEADDQNSKVH-MFTCERPYNDVKLTTDSHHELLESVLG 40
          MAEADDQNSKVH ++  ERPY+DVKLTTDSHHELLESVLG
Sbjct: 23 MAEADDQNSKVHIVYLGERPYDDVKLTTDSHHELLESVLG 62

[Close]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match: A0A6J1EUE7 (subtilisin-like protease SBT3.9 isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC111437654 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MAEADDQNSKVHM-FTCERPYNDVKLTTDSHHELLESVLG 40
          MAEADDQNSKV++ +  ERPY DVKLTTDSHHELLESV+G
Sbjct: 5  MAEADDQNSKVYIAYLGERPYEDVKLTTDSHHELLESVMG 44

[Close]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match: A0A6J1EZL0 (subtilisin-like protease SBT3.7 OS=Cucurbita moschata OX=3662 GN=LOC111437655 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0 

Query: 1  MAEADDQNSKVH-MFTCERPYNDVKLTTDSHHELLESVLG 40
          M EADDQNSKVH ++  ERPY+DV LTTDSHHELLESVLG
Sbjct: 25 MGEADDQNSKVHIVYLGERPYDDVTLTTDSHHELLESVLG 64

[Close]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match: A0A6J1EUE2 (subtilisin-like protease SBT3.9 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437654 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MAEADDQNSKVHM-FTCERPYNDVKLTTDSHHELLESVLG 40
          MAEAD+QNSKV++ +  ERPY DVKLTTDSHHELLESV+G
Sbjct: 23 MAEADNQNSKVYIAYLGERPYEDVKLTTDSHHELLESVMG 62

[Close]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match: A0A6J1ETT0 (subtilisin-like protease SBT3.7 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111437654 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0 

Query: 1  MAEADDQNSKVHM-FTCERPYNDVKLTTDSHHELLESVLG 40
          MAEAD+QNSKV++ +  ERPY DVKLTTDSHHELLESV+G
Sbjct: 23 MAEADNQNSKVYIAYLGERPYEDVKLTTDSHHELLESVMG 62

The following BLAST results are available for this feature:
BLAST of CmoCh16G006540 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBL48.1e-0985.00subtilisin-like protease SBT3.9 OS=Cucurbita maxima OX=3661 GN=LOC111482985 PE=3... [more]
A0A6J1EUE79.0e-0880.00subtilisin-like protease SBT3.9 isoform X7 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1EZL01.2e-0780.00subtilisin-like protease SBT3.7 OS=Cucurbita moschata OX=3662 GN=LOC111437655 PE... [more]
A0A6J1EUE23.4e-0777.50subtilisin-like protease SBT3.9 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1ETT03.4e-0777.50subtilisin-like protease SBT3.7 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
BLAST of CmoCh16G006540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G006540.1CmoCh16G006540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity