CmoCh16G006480 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCCCTTTATTCCCCTCCCCCTCCTTTTATACCCCATTTTCTTCCATCCCCTTTCTTCAACTCATCCATTCTCATTCAACCCCTTCCCATCCCTCTTTCACTTGCACTCTAATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTAGAGTATTAAATCTTTTGTTTATTAAATCTAAACAAGTTGAATTATGTTTAAATTTGATCGCTTGTTATCAATAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGAGTTTTTTTGGCGCACCAGAAGTTATCATAATACATATTTATATATATTGTGCTATATAAGTTCTAAAGATTGAAGAGGTTTGTACTATGAGTTTTTACGATTCTTGAAAGCTTAATAAACGGATCGACGATGTTCAAAACATGTATGGTATTATATATCTAGCTAAACTTGAGGGGTTAAAACGAATTGTGAGTTACTTAAAC ACCCCTTTATTCCCCTCCCCCTCCTTTTATACCCCATTTTCTTCCATCCCCTTTCTTCAACTCATCCATTCTCATTCAACCCCTTCCCATCCCTCTTTCACTTGCACTCTAATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGAGTTTTTTTGGCGCACCAGAAGTTATCATAATACATATTTATATATATTGTGCTATATAAGTTCTAAAGATTGAAGAGGTTTGTACTATGAGTTTTTACGATTCTTGAAAGCTTAATAAACGGATCGACGATGTTCAAAACATGTATGGTATTATATATCTAGCTAAACTTGAGGGGTTAAAACGAATTGTGAGTTACTTAAAC ATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGA MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVITLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPGVHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE Homology
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A6J1EYW1 (uncharacterized protein LOC111437667 OS=Cucurbita moschata OX=3662 GN=LOC111437667 PE=4 SV=1) HSP 1 Score: 317.4 bits (812), Expect = 3.4e-83 Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A6J1JCW6 (uncharacterized protein LOC111483341 OS=Cucurbita maxima OX=3661 GN=LOC111483341 PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77 Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A0A0KUN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047960 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63 Identity = 130/162 (80.25%), Postives = 141/162 (87.04%), Query Frame = 0
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A5A7TSH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004650 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60 Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A1S3BSV6 (uncharacterized protein LOC103493165 OS=Cucumis melo OX=3656 GN=LOC103493165 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60 Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0
BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT1G63310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16 Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 0
BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT1G75260.1 (oxidoreductases, acting on NADH or NADPH ) HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06 Identity = 35/98 (35.71%), Postives = 46/98 (46.94%), Query Frame = 0
BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05 Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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