CmoCh16G006480 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G006480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionoxidoreductases, acting on NADH or NADPH
LocationCmo_Chr16: 3195424 .. 3196297 (-)
RNA-Seq ExpressionCmoCh16G006480
SyntenyCmoCh16G006480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCCTTTATTCCCCTCCCCCTCCTTTTATACCCCATTTTCTTCCATCCCCTTTCTTCAACTCATCCATTCTCATTCAACCCCTTCCCATCCCTCTTTCACTTGCACTCTAATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTAGAGTATTAAATCTTTTGTTTATTAAATCTAAACAAGTTGAATTATGTTTAAATTTGATCGCTTGTTATCAATAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGAGTTTTTTTGGCGCACCAGAAGTTATCATAATACATATTTATATATATTGTGCTATATAAGTTCTAAAGATTGAAGAGGTTTGTACTATGAGTTTTTACGATTCTTGAAAGCTTAATAAACGGATCGACGATGTTCAAAACATGTATGGTATTATATATCTAGCTAAACTTGAGGGGTTAAAACGAATTGTGAGTTACTTAAAC

mRNA sequence

ACCCCTTTATTCCCCTCCCCCTCCTTTTATACCCCATTTTCTTCCATCCCCTTTCTTCAACTCATCCATTCTCATTCAACCCCTTCCCATCCCTCTTTCACTTGCACTCTAATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGAGTTTTTTTGGCGCACCAGAAGTTATCATAATACATATTTATATATATTGTGCTATATAAGTTCTAAAGATTGAAGAGGTTTGTACTATGAGTTTTTACGATTCTTGAAAGCTTAATAAACGGATCGACGATGTTCAAAACATGTATGGTATTATATATCTAGCTAAACTTGAGGGGTTAAAACGAATTGTGAGTTACTTAAAC

Coding sequence (CDS)

ATGGCGCCATCTTACGAAAAGCCCGCTCACTCCTCCGTCGACGACAATGAGAAGCATCGAGAATTCGGCGCCAAGGTCCAAGAAATGGCTTCCACCCTCACCAGTCGCTTGGGCATGATCCGAAAAGGAGGTTCTGCTCACCACCATGAAGTCGTCGACGACCACGGATCGAGCGTCATAACACTAGCTGGAACCAACACCGGTGCCACCATGCGTGCCGAGTTGAACGGTAAAACCAAGAAGCTCGAGGATGCGGGTGTCGACGAGAACGAGCCCCTCACCTCCTACATTAACAGCAATTTCCAAGCCATCAACAACTCCATCATGTTTGGTGGTAGCTACACAGGCAATGACCCTGGAGTTCACATGAACATCACTGATCTTCGTGAAGAAGGCCATAAGGCTGAGAAAGAAGGGGCTAAAAGCAAGAAGGTTGACAAGGAAAATGGCGAGTCCGGTGGCTCATGGCTTGCAAAGGAATGA

Protein sequence

MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVITLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPGVHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE
Homology
BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A6J1EYW1 (uncharacterized protein LOC111437667 OS=Cucurbita moschata OX=3662 GN=LOC111437667 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.4e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0

Query: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVI 60
           MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVI
Sbjct: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVI 60

Query: 61  TLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPG 120
           TLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPG
Sbjct: 61  TLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPG 120

Query: 121 VHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 161
           VHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE
Sbjct: 121 VHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 160

BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A6J1JCW6 (uncharacterized protein LOC111483341 OS=Cucurbita maxima OX=3661 GN=LOC111483341 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 152/160 (95.00%), Postives = 155/160 (96.88%), Query Frame = 0

Query: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVI 60
           MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGG+AHHHEVVDDHGSSVI
Sbjct: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGTAHHHEVVDDHGSSVI 60

Query: 61  TLAGTNTGATMRAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPG 120
           TLAGTNTGATMRAELNGK KKLEDAGVD+NEPLTSYINSNFQAINNSIMFGGSYTGNDPG
Sbjct: 61  TLAGTNTGATMRAELNGKAKKLEDAGVDKNEPLTSYINSNFQAINNSIMFGGSYTGNDPG 120

Query: 121 VHMNITDLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 161
           VHMNITDL EEGHKAEK  AKSKKVDKENGESGGS L+KE
Sbjct: 121 VHMNITDLHEEGHKAEKGRAKSKKVDKENGESGGSLLSKE 160

BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A0A0KUN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047960 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 130/162 (80.25%), Postives = 141/162 (87.04%), Query Frame = 0

Query: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVI 60
           MA SYEKPA+SS+DDNEKHREF   ++EM STLTSRLG++RKGGSA  HE+VDD GSS+I
Sbjct: 1   MARSYEKPAYSSIDDNEKHREFDRDIREMVSTLTSRLGLLRKGGSAQSHELVDDQGSSII 60

Query: 61  TLAGTNTGATMRAELNGKTKKL-EDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDP 120
           TLAGTNTGATMRAELNGKT KL +D GVDENE LTSYINSNFQAINNSIMFGGSYTGNDP
Sbjct: 61  TLAGTNTGATMRAELNGKTTKLDQDTGVDENESLTSYINSNFQAINNSIMFGGSYTGNDP 120

Query: 121 GVHMNIT-DLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 161
           GVHM  T DL EEGHKAEK GAK KKV K+N ESGGSW +KE
Sbjct: 121 GVHMEYTSDLHEEGHKAEKGGAKGKKVGKDNAESGGSWFSKE 162

BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A5A7TSH6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004650 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGS-AHHHEVVDDHGSSV 60
           MA SYEKPA+SS+DDNEKHREF   ++EM STLTSRLG++RKGGS A +HE+VDD GSSV
Sbjct: 1   MARSYEKPAYSSIDDNEKHREFDRDIREMVSTLTSRLGLLRKGGSAAQNHELVDDQGSSV 60

Query: 61  ITLAGTNTGATMRAELNGK--TKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGN 120
           ITLAGTNTGATMRAELNGK  TK  +D GVDE+E LTSYINSNFQAINNSIMFGGSYTGN
Sbjct: 61  ITLAGTNTGATMRAELNGKTMTKLDQDTGVDESESLTSYINSNFQAINNSIMFGGSYTGN 120

Query: 121 DPGVHMNIT-DLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 161
           DPGVHM  T DL EEGHKAEK GAK KK+ K+N ESGGSW +KE
Sbjct: 121 DPGVHMEYTSDLHEEGHKAEKGGAKGKKIGKDNAESGGSWFSKE 164

BLAST of CmoCh16G006480 vs. ExPASy TrEMBL
Match: A0A1S3BSV6 (uncharacterized protein LOC103493165 OS=Cucumis melo OX=3656 GN=LOC103493165 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 128/164 (78.05%), Postives = 141/164 (85.98%), Query Frame = 0

Query: 1   MAPSYEKPAHSSVDDNEKHREFGAKVQEMASTLTSRLGMIRKGGS-AHHHEVVDDHGSSV 60
           MA SYEKPA+SS+DDNEKHREF   ++EM STLTSRLG++RKGGS A +HE+VDD GSSV
Sbjct: 1   MARSYEKPAYSSIDDNEKHREFDRDIREMVSTLTSRLGLLRKGGSAAQNHELVDDQGSSV 60

Query: 61  ITLAGTNTGATMRAELNGK--TKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGN 120
           ITLAGTNTGATMRAELNGK  TK  +D GVDE+E LTSYINSNFQAINNSIMFGGSYTGN
Sbjct: 61  ITLAGTNTGATMRAELNGKTMTKLDQDTGVDESESLTSYINSNFQAINNSIMFGGSYTGN 120

Query: 121 DPGVHMNIT-DLREEGHKAEKEGAKSKKVDKENGESGGSWLAKE 161
           DPGVHM  T DL EEGHKAEK GAK KK+ K+N ESGGSW +KE
Sbjct: 121 DPGVHMEYTSDLHEEGHKAEKGGAKGKKIGKDNAESGGSWFSKE 164

BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT1G63310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 0

Query: 15  DNEKHR---EFGAKVQEMASTLTSRLGMIRKGGSAHHHEVVDDHGSSVITLAGTNTGATM 74
           + EKHR    F  +++ M S+LT   G   K G + + E  ++ G  VITL+G+N GATM
Sbjct: 9   ETEKHRRQQHFEHELKNMISSLTHMGG--DKAGPSQYDE--EEDGIRVITLSGSNLGATM 68

Query: 75  RAELNGKTKKLEDAGVDENEPLTSYINSNFQAINNSIMFGGSYTGNDPGVHMNIT-DLRE 134
           + EL+      +  G  E + L++Y+NSNFQA+NNSIM G  Y  +DPGVH++I+ D+ +
Sbjct: 69  KTELDNNHGDRDQNGDHELDFLSTYVNSNFQAVNNSIMIGAKYETHDPGVHLDISGDVEK 128

Query: 135 EGHKAEKEGAKSKK 145
              K     ++ KK
Sbjct: 129 PSVKIPARSSRGKK 138

BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT1G75260.1 (oxidoreductases, acting on NADH or NADPH )

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 35/98 (35.71%), Postives = 46/98 (46.94%), Query Frame = 0

Query: 53  DDHGSSVITLAGTNTGATM-----RAELNG---------------------KTKKLEDAG 112
           DD   SV TL G N GATM     + + +G                     +T+  +D  
Sbjct: 339 DDKSVSVYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSNPDESSNTTATETENPKDDE 398

Query: 113 VDENEPLTSYINSNFQAINNSIMFGGSYTGNDPGVHMN 125
            +E    T+YIN N Q INNSI+   S + NDPGVHM+
Sbjct: 399 AEEEASFTAYINGNTQGINNSIVVESSVSENDPGVHMS 436

BLAST of CmoCh16G006480 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 29/94 (30.85%), Postives = 46/94 (48.94%), Query Frame = 0

Query: 33  LTSRLGMIRKGGSAHHHEVVDDHGSSVITLAGTNTGATMRAELNGKTKKLEDAGVDENEP 92
           L S  G    G   H   V    G     L  +++ ++   E   KT K      + N P
Sbjct: 279 LRSPQGNKTGGSGTHSSRVSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLP 338

Query: 93  LTSYINSNFQAINNSIMFGGSYTGNDPGVHMNIT 127
           + +++NSN Q INNSI++  + + +DPGVH+ I+
Sbjct: 339 MKAFMNSNVQMINNSIVYNSTASHHDPGVHLKIS 372

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EYW13.4e-83100.00uncharacterized protein LOC111437667 OS=Cucurbita moschata OX=3662 GN=LOC1114376... [more]
A0A6J1JCW61.3e-7795.00uncharacterized protein LOC111483341 OS=Cucurbita maxima OX=3661 GN=LOC111483341... [more]
A0A0A0KUN43.0e-6380.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047960 PE=4 SV=1[more]
A0A5A7TSH62.4e-6078.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BSV62.4e-6078.05uncharacterized protein LOC103493165 OS=Cucumis melo OX=3656 GN=LOC103493165 PE=... [more]
Match NameE-valueIdentityDescription
AT1G63310.12.7e-1639.55unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G75260.12.0e-0635.71oxidoreductases, acting on NADH or NADPH [more]
AT2G46630.11.3e-0530.85unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..160
NoneNo IPR availablePANTHERPTHR33472OS01G0106600 PROTEINcoord: 15..149
NoneNo IPR availablePANTHERPTHR33472:SF3OSJNBA0094O15.16 PROTEINcoord: 15..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G006480.1CmoCh16G006480.1mRNA