CmoCh16G005950 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G005950
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 2894768 .. 2895175 (+)
RNA-Seq ExpressionCmoCh16G005950
SyntenyCmoCh16G005950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

mRNA sequence

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

Coding sequence (CDS)

ATGATCGGCAATTTGATTTCAAGCTTGAACAAAAAGTTGCAGGCGGTTGAGATCAGTAATCGCTGCAGACGAACGAAGAAGACGACTAACGTATACAGAGGCGATATGAGCAAGAAGAAGCAGCCGCAGTTGCCGTCGCAGGGGAAGCCGGAGATCGAGAAAGTGAAGAAGAGAGTGAGATTTGCAGATACGGAACCGGTGATAATCGCCATTGACAGAGAGGAGCGGAGTACAGAGGAGGAAACAGAGAAGAAAGTGGTTAGAATTACGGTGAAATTGACGAAGCAAGAAGCGAATCGGATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTAGAATTCGGAGATGTTGCGAGTGAGCTCATGCGGATTCCTGCGGCCCGCGTTAGCTCTTCTATGGTAGTCAATTGA

Protein sequence

MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASELMRIPAARVSSSMVVN
Homology
BLAST of CmoCh16G005950 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0

Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKPEIEKVKKRVR 60

Query: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASEL 120
           FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASEL
Sbjct: 61  FADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVASEL 120

Query: 121 MRIPAARVSSSM 133
           MRIPAARVSSSM
Sbjct: 121 MRIPAARVSSSM 132

BLAST of CmoCh16G005950 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0

Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQ--LPSQGKPEIEKVKKR 60
           MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYR DMSKKKQPQ   PSQGKPEIEKVKKR
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRRDMSKKKQPQSPSPSQGKPEIEKVKKR 60

Query: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120
           VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS
Sbjct: 61  VRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120

Query: 121 ELMRIPAARVSSSM 133
           ELMRIPAARVSSSM
Sbjct: 121 ELMRIPAARVSSSM 134

BLAST of CmoCh16G005950 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 106/140 (75.71%), Postives = 114/140 (81.43%), Query Frame = 0

Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEISNRC+RTKKTT VYR D++KKK     S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGD 120
           KKRVRFADTEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLEFGD
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 VASELMRIPAARVSSSMVVN 136
           VASEL+RIP  RVSSS+V N
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

BLAST of CmoCh16G005950 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.3e-43
Identity = 106/140 (75.71%), Postives = 114/140 (81.43%), Query Frame = 0

Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEISNRC+RTKKTT VYR D++KKK     S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTTYVYRDDLTKKKHSPPLSSSSPQHQPAEIKKV 60

Query: 61  KKRVRFADTEPVIIAIDREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGD 120
           KKRVRFADTEPVIIAI  +    EEETEKKVVRITVKLTKQEANRMLSRCS+ GVLEFGD
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLEFGD 120

Query: 121 VASELMRIPAARVSSSMVVN 136
           VASEL+RIP  RVSSS+V N
Sbjct: 121 VASELLRIPPTRVSSSLVAN 140

BLAST of CmoCh16G005950 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.2e-42
Identity = 106/142 (74.65%), Postives = 114/142 (80.28%), Query Frame = 0

Query: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTNVYRGDMSKKKQPQLPSQGKP-----EIEKV 60
           MI NLISSLNKKLQAVEIS+RC+RTKKT  VYR +++KK      S   P     EI+KV
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTAYVYRDNLTKKNHSPPSSSSSPQHQPEEIKKV 60

Query: 61  KKRVRFADTEPVIIAI--DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEF 120
           KKRVRFADTEPVIIAI  DREE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVLEF
Sbjct: 61  KKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLEF 120

Query: 121 GDVASELMRIPAARVSSSMVVN 136
           GDVASELMRIP  RV SS+V N
Sbjct: 121 GDVASELMRIPPTRVRSSLVAN 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EU861.4e-61100.00uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376... [more]
A0A6J1JBA81.9e-5897.01uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436... [more]
A0A5D3D2461.3e-4375.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BS401.3e-4375.71uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=... [more]
A0A0A0KYE14.2e-4274.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..51
NoneNo IPR availablePANTHERPTHR36782BNAC03G62080D PROTEINcoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G005950.1CmoCh16G005950.1mRNA