CmoCh16G005880 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAACTGTTCTCTGAAAGGAGTGGCCGCCGATTGCGAAAAGCCCATCAGAATCTTAACGGATTCCGGCAACATAATCAACTTCCATGGCCCTAAACAAGTCGATCAAATCCTCAAGAACTATCCTCCCGGCGTCTATGGCGTTTTCCGGCGCCCCAATCTCTCTTCGCCATTACCCATTTCGGAGCTCCTCGACGCCGGAAAATCCTACTTTCTCCTCCCGCTTTCCCGAGCCGTAGAGAAAGAGAGGTCCGATGCGGCCGAGGATCTGAGAAGTGGGTCGGGGCTGGAAGTGCTACCGACAGGTGGCGACGGCATTTGGAGGGTCAAATTGGTGATTGATACGAAACAGTTGGGGGAAATTTTGGCAGAGGAAGGGAACACAGAGGCGTTGATTGAGAGGATGAGAGCGGCGGCGGCGACGGCGGCGGTGCAGAGTCCACGGCGGGAGAAGATCGGAGGGTGGAAGCCGACATGGGGGAATTGGTCGAAGTTTCTTCCAATTGATGTTGGAAACAATAATAAAGCACAAATCAAGGATTTTCATTCTGGAAATGGGTGTTTATATGCTACATAA ATGGGAAACTGTTCTCTGAAAGGAGTGGCCGCCGATTGCGAAAAGCCCATCAGAATCTTAACGGATTCCGGCAACATAATCAACTTCCATGGCCCTAAACAAGTCGATCAAATCCTCAAGAACTATCCTCCCGGCGTCTATGGCGTTTTCCGGCGCCCCAATCTCTCTTCGCCATTACCCATTTCGGAGCTCCTCGACGCCGGAAAATCCTACTTTCTCCTCCCGCTTTCCCGAGCCGTAGAGAAAGAGAGGTCCGATGCGGCCGAGGATCTGAGAAGTGGGTCGGGGCTGGAAGTGCTACCGACAGGTGGCGACGGCATTTGGAGGGTCAAATTGGTGATTGATACGAAACAGTTGGGGGAAATTTTGGCAGAGGAAGGGAACACAGAGGCGTTGATTGAGAGGATGAGAGCGGCGGCGGCGACGGCGGCGGTGCAGAGTCCACGGCGGGAGAAGATCGGAGGGTGGAAGCCGACATGGGGGAATTGGTCGAAGTTTCTTCCAATTGATGTTGGAAACAATAATAAAGCACAAATCAAGGATTTTCATTCTGGAAATGGGTGTTTATATGCTACATAA ATGGGAAACTGTTCTCTGAAAGGAGTGGCCGCCGATTGCGAAAAGCCCATCAGAATCTTAACGGATTCCGGCAACATAATCAACTTCCATGGCCCTAAACAAGTCGATCAAATCCTCAAGAACTATCCTCCCGGCGTCTATGGCGTTTTCCGGCGCCCCAATCTCTCTTCGCCATTACCCATTTCGGAGCTCCTCGACGCCGGAAAATCCTACTTTCTCCTCCCGCTTTCCCGAGCCGTAGAGAAAGAGAGGTCCGATGCGGCCGAGGATCTGAGAAGTGGGTCGGGGCTGGAAGTGCTACCGACAGGTGGCGACGGCATTTGGAGGGTCAAATTGGTGATTGATACGAAACAGTTGGGGGAAATTTTGGCAGAGGAAGGGAACACAGAGGCGTTGATTGAGAGGATGAGAGCGGCGGCGGCGACGGCGGCGGTGCAGAGTCCACGGCGGGAGAAGATCGGAGGGTGGAAGCCGACATGGGGGAATTGGTCGAAGTTTCTTCCAATTGATGTTGGAAACAATAATAAAGCACAAATCAAGGATTTTCATTCTGGAAATGGGTGTTTATATGCTACATAA MGNCSLKGVAADCEKPIRILTDSGNIINFHGPKQVDQILKNYPPGVYGVFRRPNLSSPLPISELLDAGKSYFLLPLSRAVEKERSDAAEDLRSGSGLEVLPTGGDGIWRVKLVIDTKQLGEILAEEGNTEALIERMRAAAATAAVQSPRREKIGGWKPTWGNWSKFLPIDVGNNNKAQIKDFHSGNGCLYAT Homology
BLAST of CmoCh16G005880 vs. ExPASy TrEMBL
Match: A0A6J1EZE8 (uncharacterized protein LOC111437614 OS=Cucurbita moschata OX=3662 GN=LOC111437614 PE=4 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 3.1e-107 Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0
BLAST of CmoCh16G005880 vs. ExPASy TrEMBL
Match: A0A6J1J4V0 (uncharacterized protein LOC111483432 OS=Cucurbita maxima OX=3661 GN=LOC111483432 PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 1.2e-103 Identity = 185/192 (96.35%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of CmoCh16G005880 vs. ExPASy TrEMBL
Match: A0A0A0KYF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052720 PE=4 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 1.5e-80 Identity = 150/188 (79.79%), Postives = 164/188 (87.23%), Query Frame = 0
BLAST of CmoCh16G005880 vs. ExPASy TrEMBL
Match: A0A5A7TTS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003550 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78 Identity = 148/188 (78.72%), Postives = 160/188 (85.11%), Query Frame = 0
BLAST of CmoCh16G005880 vs. ExPASy TrEMBL
Match: A0A1S3BTS2 (uncharacterized protein LOC103493080 OS=Cucumis melo OX=3656 GN=LOC103493080 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 1.1e-78 Identity = 148/188 (78.72%), Postives = 160/188 (85.11%), Query Frame = 0
BLAST of CmoCh16G005880 vs. TAIR 10
Match: AT3G61920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, hypocotyl, root, egg cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-14 Identity = 54/156 (34.62%), Postives = 78/156 (50.00%), Query Frame = 0
BLAST of CmoCh16G005880 vs. TAIR 10
Match: AT4G10910.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 57.8 bits (138), Expect = 1.1e-08 Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0
BLAST of CmoCh16G005880 vs. TAIR 10
Match: AT1G64700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 1.5e-05 Identity = 49/197 (24.87%), Postives = 81/197 (41.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|