CmoCh16G005860 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGTCTGAGCCATTTCTAGAATTCTTCAATTTCCTCGCACGGCCACTCCCTTCCATTTGACTACGCGTTGTTTGGGATAATCGCTTTCTTATTTGCTTAATCACTCTAACCTTCTTCGTTCTTTAATGATTTCTTATCCTGTTTGTTTGTTTCTATTGAATTTTGATGCCTTTTTCTTCCTTTGAATTCGCCCTTTTTCATCTTCTACACGCAATCTCATCTTCCTTTACCTAATACCCATCTCTTTTGTTTGGTATTACTCTCTGGGGTTTTGATTTCTCTGAGTTAGGGGCTAAGTTCGGAGGTGGGTTTGTTCAGAAATGGAGAGTAACCCGCAATCGCTTAGGCAATTCAGCGACCAGCTTCGACTGCAATCTGGGAATCTTACGAACCTGTCGCTCAACGATTCTATCTGGAGCAATTCGTACGTCTCCAAGAGGCAGGAAGAGAGGAGGAATTTCGATGTGCGAAATGGCGGAGAGGTAAATTTAGTGAATAATTTTAAGCCCAAACTGTGTGATTCTGATGTTAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCGAGTGTTGCTTCTGATCTTAATAATTGGAGTAACAGTAGCAATCTTAGTTCAACTGGGTATGAGAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTGAAGCCACAGGGGTCTGATTTTAATGGCTTCAACGATGGGTGGAAGCTTAATTCTGCAAATATGGGGGTTGATTCAGTGATTGGAGGAACCCAAAAGGGTATTAATGGAGGGATTTACTCACAAATTGGGAATTTTAACAGTAATGGTTTTGTAAATGTGAAGAACTACAAGAACAGTGGGAAGGTTGAAGAAGAAAATGGAGGAAAGAATGGGAAGAAGAACAGTAACAAGAAGATTAATGGTGAAAATAGCAATGATAATAAGGAAAGTAATAAGAATGGTTTGGACAAGAGGTTCAAAACCCTTCCCCCATCTGAGTCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTGTGCAACAATGATACAATGCAAGAGAATCTGAAGAGGCAGCTTTTTGGTGAGTTTAATGATCCAACTTGGTTTTTGCTTAGTTTTATGTATCTGTGTTTTGTTGTGTAGGATGTTCTAAGATTTTGTTGTTTGATCAACGTTGTAGGTTTGCCTCCAAGATACAGGGATTCTGTCAGGGCCATAACTCCTGGGCTGCCTATTTTCCTCTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGTATGTCCATGTCTCCTTCTTATGCTCTCGTGGCTTTGCTGATGTATTCTGTACTTATAAACTCATGATCAATCCCTTAATAAGCCAACGTGGGACTCCTCTCCCAATAATCGCTCCCTTCAAACAAAGTAACACTATAGAGCCTCCCCTGAGACCTATGGAGCCATCCAACAACCTCTTCTTAATCGAGGCTCGACTCTTTCTTTGGAGCCTTCGAACAAAGTGTACCCCCTTTGTTCGACACTTTAGTCACTTTTGACTACACCTTTGAGGTTCACAACATTTTTGTTTGTTCGTCATTTGAGGATTCTATTAACATGACTAAGTTAAGGGCATGATTCTGATACCATGTTAGGAACCATGGACCTCCTCTAAGTCCGTTTGGTTTACTTCTTTTAAGACTATGATATGTGTTTTCAGGCTGCAAGCTTTGGAGGGACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCGGGCGAATCTCGTTTCCCGGCGCAGGTAATGTTTGGATAGAGAACCTACTCCTTCAATCTTGCACTTCCATAGATCTAAGATGAAACTCAACTGTTTGGAACAGGTCAGAACTGTGACTAGGAAGATATGTGAGCCACTGGAAGAGGACTCTTTCAGACCGATTCTTCACCACTATGACGGTCCCAAGTTTCGTCTCGAACTCAACATCCCAGAGGTAATTGCAGAGCAAACAAAACCATGAATTCTGTAGCTAGCTAACCAAAGACCTCAACAACTCTAATATTGGCTCTGAACAACTTGCAGGCACTCTCTCTTCTGGATATATTTGAAGAACAATCCTGTTGA AAAAGTCTGAGCCATTTCTAGAATTCTTCAATTTCCTCGCACGGCCACTCCCTTCCATTTGACTACGCGTTGTTTGGGATAATCGCTTTCTTATTTGCTTAATCACTCTAACCTTCTTCGTTCTTTAATGATTTCTTATCCTGTTTGTTTGTTTCTATTGAATTTTGATGCCTTTTTCTTCCTTTGAATTCGCCCTTTTTCATCTTCTACACGCAATCTCATCTTCCTTTACCTAATACCCATCTCTTTTGTTTGGTATTACTCTCTGGGGTTTTGATTTCTCTGAGTTAGGGGCTAAGTTCGGAGGTGGGTTTGTTCAGAAATGGAGAGTAACCCGCAATCGCTTAGGCAATTCAGCGACCAGCTTCGACTGCAATCTGGGAATCTTACGAACCTGTCGCTCAACGATTCTATCTGGAGCAATTCGTACGTCTCCAAGAGGCAGGAAGAGAGGAGGAATTTCGATGTGCGAAATGGCGGAGAGGTAAATTTAGTGAATAATTTTAAGCCCAAACTGTGTGATTCTGATGTTAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCGAGTGTTGCTTCTGATCTTAATAATTGGAGTAACAGTAGCAATCTTAGTTCAACTGGGTATGAGAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTGAAGCCACAGGGGTCTGATTTTAATGGCTTCAACGATGGGTGGAAGCTTAATTCTGCAAATATGGGGGTTGATTCAGTGATTGGAGGAACCCAAAAGGGTATTAATGGAGGGATTTACTCACAAATTGGGAATTTTAACAGTAATGGTTTTGTAAATGTGAAGAACTACAAGAACAGTGGGAAGGTTGAAGAAGAAAATGGAGGAAAGAATGGGAAGAAGAACAGTAACAAGAAGATTAATGGTGAAAATAGCAATGATAATAAGGAAAGTAATAAGAATGGTTTGGACAAGAGGTTCAAAACCCTTCCCCCATCTGAGTCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTGTGCAACAATGATACAATGCAAGAGAATCTGAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGGGATTCTGTCAGGGCCATAACTCCTGGGCTGCCTATTTTCCTCTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGGACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCGGGCGAATCTCGTTTCCCGGCGCAGGTCAGAACTGTGACTAGGAAGATATGTGAGCCACTGGAAGAGGACTCTTTCAGACCGATTCTTCACCACTATGACGGTCCCAAGTTTCGTCTCGAACTCAACATCCCAGAGGCACTCTCTCTTCTGGATATATTTGAAGAACAATCCTGTTGA ATGGAGAGTAACCCGCAATCGCTTAGGCAATTCAGCGACCAGCTTCGACTGCAATCTGGGAATCTTACGAACCTGTCGCTCAACGATTCTATCTGGAGCAATTCGTACGTCTCCAAGAGGCAGGAAGAGAGGAGGAATTTCGATGTGCGAAATGGCGGAGAGGTAAATTTAGTGAATAATTTTAAGCCCAAACTGTGTGATTCTGATGTTAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCGAGTGTTGCTTCTGATCTTAATAATTGGAGTAACAGTAGCAATCTTAGTTCAACTGGGTATGAGAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTGAAGCCACAGGGGTCTGATTTTAATGGCTTCAACGATGGGTGGAAGCTTAATTCTGCAAATATGGGGGTTGATTCAGTGATTGGAGGAACCCAAAAGGGTATTAATGGAGGGATTTACTCACAAATTGGGAATTTTAACAGTAATGGTTTTGTAAATGTGAAGAACTACAAGAACAGTGGGAAGGTTGAAGAAGAAAATGGAGGAAAGAATGGGAAGAAGAACAGTAACAAGAAGATTAATGGTGAAAATAGCAATGATAATAAGGAAAGTAATAAGAATGGTTTGGACAAGAGGTTCAAAACCCTTCCCCCATCTGAGTCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTGTGCAACAATGATACAATGCAAGAGAATCTGAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGGGATTCTGTCAGGGCCATAACTCCTGGGCTGCCTATTTTCCTCTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGGACAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCGGGCGAATCTCGTTTCCCGGCGCAGGTCAGAACTGTGACTAGGAAGATATGTGAGCCACTGGAAGAGGACTCTTTCAGACCGATTCTTCACCACTATGACGGTCCCAAGTTTCGTCTCGAACTCAACATCCCAGAGGCACTCTCTCTTCTGGATATATTTGAAGAACAATCCTGTTGA MESNPQSLRQFSDQLRLQSGNLTNLSLNDSIWSNSYVSKRQEERRNFDVRNGGEVNLVNNFKPKLCDSDVNRFNDGWNSFKPSVASDLNNWSNSSNLSSTGYEKNALNVFDNGWNSLKPQGSDFNGFNDGWKLNSANMGVDSVIGGTQKGINGGIYSQIGNFNSNGFVNVKNYKNSGKVEEENGGKNGKKNSNKKINGENSNDNKESNKNGLDKRFKTLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYSTHQLHGIFEAASFGGTNIDPTAWEDKKTPGESRFPAQVRTVTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFEEQSC Homology
BLAST of CmoCh16G005860 vs. ExPASy Swiss-Prot
Match: C6TAQ0 (DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 1.2e-104 Identity = 221/368 (60.05%), Postives = 254/368 (69.02%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy Swiss-Prot
Match: Q5JZR1 (DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.1e-97 Identity = 216/375 (57.60%), Postives = 252/375 (67.20%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy Swiss-Prot
Match: Q8RXN8 (DCD domain-containing protein NRP OS=Arabidopsis thaliana OX=3702 GN=NRP PE=1 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 7.8e-96 Identity = 207/366 (56.56%), Postives = 245/366 (66.94%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy Swiss-Prot
Match: P37707 (B2 protein OS=Daucus carota OX=4039 PE=2 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 1.1e-84 Identity = 157/201 (78.11%), Postives = 170/201 (84.58%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy TrEMBL
Match: A0A6J1EU91 (B2 protein-like OS=Cucurbita moschata OX=3662 GN=LOC111437613 PE=4 SV=1) HSP 1 Score: 732.3 bits (1889), Expect = 1.0e-207 Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy TrEMBL
Match: A0A6J1JD73 (uncharacterized protein MAL13P1.336-like OS=Cucurbita maxima OX=3661 GN=LOC111483419 PE=4 SV=1) HSP 1 Score: 715.7 bits (1846), Expect = 9.9e-203 Identity = 357/368 (97.01%), Postives = 360/368 (97.83%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy TrEMBL
Match: A0A5D3CZ33 (Putative cyclin-dependent serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003540 PE=4 SV=1) HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185 Identity = 330/370 (89.19%), Postives = 346/370 (93.51%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy TrEMBL
Match: A0A1S3BTF4 (DCD domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103493079 PE=4 SV=1) HSP 1 Score: 659.1 bits (1699), Expect = 1.1e-185 Identity = 330/370 (89.19%), Postives = 346/370 (93.51%), Query Frame = 0
BLAST of CmoCh16G005860 vs. ExPASy TrEMBL
Match: A0A6J1FQF7 (DCD domain-containing protein OS=Cucurbita moschata OX=3662 GN=LOC111447293 PE=4 SV=1) HSP 1 Score: 635.2 bits (1637), Expect = 1.7e-178 Identity = 317/371 (85.44%), Postives = 344/371 (92.72%), Query Frame = 0
BLAST of CmoCh16G005860 vs. TAIR 10
Match: AT5G42050.1 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 352.1 bits (902), Expect = 5.5e-97 Identity = 207/366 (56.56%), Postives = 245/366 (66.94%), Query Frame = 0
BLAST of CmoCh16G005860 vs. TAIR 10
Match: AT3G27090.1 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 267.7 bits (683), Expect = 1.4e-71 Identity = 153/283 (54.06%), Postives = 188/283 (66.43%), Query Frame = 0
BLAST of CmoCh16G005860 vs. TAIR 10
Match: AT5G01660.1 (CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 1.2e-22 Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 0
BLAST of CmoCh16G005860 vs. TAIR 10
Match: AT3G11000.1 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 104.8 bits (260), Expect = 1.5e-22 Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 0
BLAST of CmoCh16G005860 vs. TAIR 10
Match: AT3G11000.2 (DCD (Development and Cell Death) domain protein ) HSP 1 Score: 104.8 bits (260), Expect = 1.5e-22 Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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