CmoCh16G005740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G005740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 2776402 .. 2777582 (+)
RNA-Seq Expression	CmoCh16G005740
Synteny	CmoCh16G005740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTTGTATTTTCACCTTCAATCCCACCTTTGATCCTTCAACAATGGCTTCCATGGCTGCCTTCAACACCTTCTTTTTCATCTTCCTCCTCTTCACTTACCCTAATTCAGGTACTTTTAATTAGGGTTTAGGGTTTAGATCTGTTTGTCAGTGTTCAAAATGGAAATTAGGGTTTCATAATTATACATTTTTGGCTGAGATTTTTGTTGGTTTTCTTCCTTTTGTAGGGGTTGCTGATGGTCTGAACTTGAAGGAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAACCCTAAGCTCGAAGTTCAAAATTTTCTTCGTAACATAAGAACTGAAAATTATCGACTTTTGAGATGATAATTGTTCTATTTTTTAAAATATTTGAAAATATTAAAGTTAGTGTAAGATCGCACGTCTGTTGGAGAGAGGAATGAAGCATTTCTTGTGAGGGTGTGAAAACCTCTCTCTAACAAACATGTTTTAAAACCATGAAACTTACGGCGATATGTAACAAGCCACAACGGATAATATCTTATGGATTTGAGCTGTTATCGTTAGTGTTTGAAAGCTTGAGTTTAGAAAATCCATGTTCTAAGACATGAGTCCCGAATATGTTCGTAATACAAATCAACAGAATCCAAACCCTAGATTTAATAAACTCACGAGCCAAACATGAATTCAACATCTTAAGCCAAACCCACACGAACTCAAATTTGAACGCTCACCCGAGTACACGAACTCAAAGCTTCATGTGTATTTGGAATAACCATACGTCACAAGGATATAAAAACATTGTCATTGATGTCGATGACTCGAACTCATCAATGAATCAACGAACATATCATCCATTTATGTCCATTCCTGAATAAACGAACAACGTAAAATCATTATAATTATCGTCTTCCTTAAGTCACAGGTGAGAGTTGAGAAGAACAAAGTGGCAAGAAAGCTTTTGGGAGCAGAAGAATTTTCAGACTATGCAAGCCCAGAACATAACAGAAGACATGAGCCAAGGATTGGGAGCCCTGGAGGAAGAGCATAAGAGTGCCAATCCAAACGTGGTTGGTGACGTTTGAGTGAGCTTTATGGTGTGGTTTTGTGAACAGAGTTTTAATTATATATGGAGTGTGTTTCATAAACATATGTTTGTTGTAGAAAGTGAGTATCATATGGTGTG

mRNA sequence

TACTTGTATTTTCACCTTCAATCCCACCTTTGATCCTTCAACAATGGCTTCCATGGCTGCCTTCAACACCTTCTTTTTCATCTTCCTCCTCTTCACTTACCCTAATTCAGGGGTTGCTGATGGTCTGAACTTGAAGGAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAACCCTAAGCTCGAAGTGAGAGTTGAGAAGAACAAAGTGGCAAGAAAGCTTTTGGGAGCAGAAGAATTTTCAGACTATGCAAGCCCAGAACATAACAGAAGACATGAGCCAAGGATTGGGAGCCCTGGAGGAAGAGCATAAGAGTGCCAATCCAAACGTGGTTGGTGACGTTTGAGTGAGCTTTATGGTGTGGTTTTGTGAACAGAGTTTTAATTATATATGGAGTGTGTTTCATAAACATATGTTTGTTGTAGAAAGTGAGTATCATATGGTGTG

Coding sequence (CDS)

ATGGCTTCCATGGCTGCCTTCAACACCTTCTTTTTCATCTTCCTCCTCTTCACTTACCCTAATTCAGGGGTTGCTGATGGTCTGAACTTGAAGGAGGGTTTGAAGCTACCAAACCCTTGTGGGCAGGTGAGAAACCCTAAGCTCGAAGTGAGAGTTGAGAAGAACAAAGTGGCAAGAAAGCTTTTGGGAGCAGAAGAATTTTCAGACTATGCAAGCCCAGAACATAACAGAAGACATGAGCCAAGGATTGGGAGCCCTGGAGGAAGAGCATAA

Protein sequence

MASMAAFNTFFFIFLLFTYPNSGVADGLNLKEGLKLPNPCGQVRNPKLEVRVEKNKVARKLLGAEEFSDYASPEHNRRHEPRIGSPGGRA

Homology

[Close]

BLAST of CmoCh16G005740 vs. ExPASy TrEMBL
Match: A0A0A0KYH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 4  MAAF-NTFFFIFL-LFTYPNSGVADGLNLKEGLKLPNPCGQVRNPKLEVRVEKNKVARKL 63
          MAAF  TF FIFL +F +PNSG A  L+LK+GLKL NPCGQ+      +  + NKV RKL
Sbjct: 1  MAAFIKTFIFIFLIIFMFPNSGDAHDLSLKKGLKLSNPCGQL------IVEKNNKVTRKL 60

Query: 64 LGAEEFSDYASPEHNRRHEPRIGSPGGRA 91
          LGAE F+DYASP+HN RHEPR G+PGGRA
Sbjct: 61 LGAEAFADYASPDHNTRHEPRFGNPGGRA 83

[Close]

BLAST of CmoCh16G005740 vs. ExPASy TrEMBL
Match: A0A5D3D203 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003180 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 56/89 (62.92%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 4  MAAF-NTFFFIFL-LFTYPNSGVADGLNLKEGLKLPNPCGQVRNPKLEVRVEKNKVARKL 63
          MAAF  TF FIFL +FT+P+SG A  L+LK+GLKL NPCGQ+      +  + N+V RKL
Sbjct: 1  MAAFIKTFIFIFLIIFTFPDSGDAGDLSLKKGLKLSNPCGQM------IVEKNNRVTRKL 60

Query: 64 LGAEEFSDYASPEHNRRHEPRIGSPGGRA 91
          LGAE   DYASP+HN RHEPR GSPGGRA
Sbjct: 61 LGAEVLLDYASPDHNSRHEPRFGSPGGRA 83

The following BLAST results are available for this feature:

BLAST of CmoCh16G005740 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYH7	1.5e-19	64.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055320 PE=4 SV=1	[more]
A0A5D3D203	1.7e-18	62.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmoCh16G005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G005740.1	CmoCh16G005740.1	mRNA