CmoCh16G005670 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCCGGCCCGGTCCGGTCCGGTTCAGGATAATGGAAGAGCGGGTTCCAAAGCGACAACAGTGTCGTGGGCTCCACTTGTTGTAAGGCGTGACTTTGTGACAAATGAATTAGCCGTTGGAAACCTATTTTGCCGACTTTTTCGCCAATCGCCATCCACCTATGGCGGGCTTCACTCGGCTGCTTCCTCCCTAACACGATTCCATTTTTTTTGGTTTTCTTCATCAATGGCGGATTTCTCCTTTCTTTCCGACACCGACGATTCGGCCGTCGAAGATCTGCTTTCCCAAACGCAGGATCTCTGTGTTCTCGAGCAACTCTCTGCCATCAACTGCTCTGGCTTCACCGACTCTGTTCTTCCCACTGACCTTGAATCTCGATTTCGGAAGCTCAAATCCTTTCCTGCTGCCAAATCCGAGACCAGATCCGGTTTCGATTTGAAGAGTAGTCGATCTGTACAGTCCTGCGATGAGAAACCGGACGATGATTTTGCAGTTTTTTCTCCCTCTAAACAGAGTCACAAGAAGGAATTAGGGTTTAGCCCTAAATCTCAGTCGAAGCGTCTGCCGGATTCCTCATCGGGAAAAGGAAATTCAACGCCACCGATGGACAATCAAAAGCCGAAAAATGGAAGTTCCAGAGCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGTATTCTTCGACTTCATCTGGTGAAATCGATGAATTTTTAGAACCGAAGAAAGGTACCAAAATCCGGTCAAAAACCAGCTCAGAATCGGGATCCTTCGCTTCTCCGCCACAATCTCCGCCGAGAAGAGCCGGTTGTTTTTGGTGTTCACCGAAGAAAGCTTCAGAGAAGAAGAACAGCAGCAACAGAACTCTCGATAATGGCCTTGGATGGGGTAAGAACAACGATTTCCTGTCAGATTTGAACATTTTCTCGGCAAAAGAGCAACAGAAAATCCTGAAAAAGGCAATGAAAGAGGAAGAGAAGATCAATCGGGAGGCTGAGAAAATTGTGAAATGGGCAAAACAAGCTTCGGCTAGGATGAATGTTTCAGACATTGAAGACGAGCTCAGCGATCCAGAAATCAAAAAATGA ATGGCTCCGGCCCGGTCCGGTCCGGTTCAGGATAATGGAAGAGCGGGTTCCAAAGCGACAACAGTGTCGTGGGCTCCACTTGTTGTAAGGCGTGACTTTGTGACAAATGAATTAGCCGTTGGAAACCTATTTTGCCGACTTTTTCGCCAATCGCCATCCACCTATGGCGGGCTTCACTCGGCTGCTTCCTCCCTAACACGATTCCATTTTTTTTGGTTTTCTTCATCAATGGCGGATTTCTCCTTTCTTTCCGACACCGACGATTCGGCCGTCGAAGATCTGCTTTCCCAAACGCAGGATCTCTGTGTTCTCGAGCAACTCTCTGCCATCAACTGCTCTGGCTTCACCGACTCTGTTCTTCCCACTGACCTTGAATCTCGATTTCGGAAGCTCAAATCCTTTCCTGCTGCCAAATCCGAGACCAGATCCGGTTTCGATTTGAAGAGTAGTCGATCTGTACAGTCCTGCGATGAGAAACCGGACGATGATTTTGCAGTTTTTTCTCCCTCTAAACAGAGTCACAAGAAGGAATTAGGGTTTAGCCCTAAATCTCAGTCGAAGCGTCTGCCGGATTCCTCATCGGGAAAAGGAAATTCAACGCCACCGATGGACAATCAAAAGCCGAAAAATGGAAGTTCCAGAGCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGTATTCTTCGACTTCATCTGGTGAAATCGATGAATTTTTAGAACCGAAGAAAGGTACCAAAATCCGGTCAAAAACCAGCTCAGAATCGGGATCCTTCGCTTCTCCGCCACAATCTCCGCCGAGAAGAGCCGGTTGTTTTTGGTGTTCACCGAAGAAAGCTTCAGAGAAGAAGAACAGCAGCAACAGAACTCTCGATAATGGCCTTGGATGGGGTAAGAACAACGATTTCCTGTCAGATTTGAACATTTTCTCGGCAAAAGAGCAACAGAAAATCCTGAAAAAGGCAATGAAAGAGGAAGAGAAGATCAATCGGGAGGCTGAGAAAATTGTGAAATGGGCAAAACAAGCTTCGGCTAGGATGAATGTTTCAGACATTGAAGACGAGCTCAGCGATCCAGAAATCAAAAAATGA ATGGCTCCGGCCCGGTCCGGTCCGGTTCAGGATAATGGAAGAGCGGGTTCCAAAGCGACAACAGTGTCGTGGGCTCCACTTGTTGTAAGGCGTGACTTTGTGACAAATGAATTAGCCGTTGGAAACCTATTTTGCCGACTTTTTCGCCAATCGCCATCCACCTATGGCGGGCTTCACTCGGCTGCTTCCTCCCTAACACGATTCCATTTTTTTTGGTTTTCTTCATCAATGGCGGATTTCTCCTTTCTTTCCGACACCGACGATTCGGCCGTCGAAGATCTGCTTTCCCAAACGCAGGATCTCTGTGTTCTCGAGCAACTCTCTGCCATCAACTGCTCTGGCTTCACCGACTCTGTTCTTCCCACTGACCTTGAATCTCGATTTCGGAAGCTCAAATCCTTTCCTGCTGCCAAATCCGAGACCAGATCCGGTTTCGATTTGAAGAGTAGTCGATCTGTACAGTCCTGCGATGAGAAACCGGACGATGATTTTGCAGTTTTTTCTCCCTCTAAACAGAGTCACAAGAAGGAATTAGGGTTTAGCCCTAAATCTCAGTCGAAGCGTCTGCCGGATTCCTCATCGGGAAAAGGAAATTCAACGCCACCGATGGACAATCAAAAGCCGAAAAATGGAAGTTCCAGAGCGAAATCGAAATGTAGGTACGTTTCATCTCCTTCGTATTCTTCGACTTCATCTGGTGAAATCGATGAATTTTTAGAACCGAAGAAAGGTACCAAAATCCGGTCAAAAACCAGCTCAGAATCGGGATCCTTCGCTTCTCCGCCACAATCTCCGCCGAGAAGAGCCGGTTGTTTTTGGTGTTCACCGAAGAAAGCTTCAGAGAAGAAGAACAGCAGCAACAGAACTCTCGATAATGGCCTTGGATGGGGTAAGAACAACGATTTCCTGTCAGATTTGAACATTTTCTCGGCAAAAGAGCAACAGAAAATCCTGAAAAAGGCAATGAAAGAGGAAGAGAAGATCAATCGGGAGGCTGAGAAAATTGTGAAATGGGCAAAACAAGCTTCGGCTAGGATGAATGTTTCAGACATTGAAGACGAGCTCAGCGATCCAGAAATCAAAAAATGA MAPARSGPVQDNGRAGSKATTVSWAPLVVRRDFVTNELAVGNLFCRLFRQSPSTYGGLHSAASSLTRFHFFWFSSSMADFSFLSDTDDSAVEDLLSQTQDLCVLEQLSAINCSGFTDSVLPTDLESRFRKLKSFPAAKSETRSGFDLKSSRSVQSCDEKPDDDFAVFSPSKQSHKKELGFSPKSQSKRLPDSSSGKGNSTPPMDNQKPKNGSSRAKSKCRYVSSPSYSSTSSGEIDEFLEPKKGTKIRSKTSSESGSFASPPQSPPRRAGCFWCSPKKASEKKNSSNRTLDNGLGWGKNNDFLSDLNIFSAKEQQKILKKAMKEEEKINREAEKIVKWAKQASARMNVSDIEDELSDPEIKK Homology
BLAST of CmoCh16G005670 vs. ExPASy TrEMBL
Match: A0A6J1EZA7 (uncharacterized protein LOC111437587 OS=Cucurbita moschata OX=3662 GN=LOC111437587 PE=4 SV=1) HSP 1 Score: 542.0 bits (1395), Expect = 1.9e-150 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
BLAST of CmoCh16G005670 vs. ExPASy TrEMBL
Match: A0A6J1JDL6 (uncharacterized protein LOC111483447 OS=Cucurbita maxima OX=3661 GN=LOC111483447 PE=4 SV=1) HSP 1 Score: 523.9 bits (1348), Expect = 5.5e-145 Identity = 275/286 (96.15%), Postives = 280/286 (97.90%), Query Frame = 0
BLAST of CmoCh16G005670 vs. ExPASy TrEMBL
Match: A0A0A0KYJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G055420 PE=4 SV=1) HSP 1 Score: 431.4 bits (1108), Expect = 3.7e-117 Identity = 231/283 (81.63%), Postives = 251/283 (88.69%), Query Frame = 0
BLAST of CmoCh16G005670 vs. ExPASy TrEMBL
Match: A0A5D3CYZ5 (Hepatoma-derived growth factor-related protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003060 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 2.4e-116 Identity = 234/287 (81.53%), Postives = 251/287 (87.46%), Query Frame = 0
BLAST of CmoCh16G005670 vs. ExPASy TrEMBL
Match: A0A1S3BTQ7 (uncharacterized protein LOC103493061 OS=Cucumis melo OX=3656 GN=LOC103493061 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 2.4e-116 Identity = 234/287 (81.53%), Postives = 251/287 (87.46%), Query Frame = 0
BLAST of CmoCh16G005670 vs. TAIR 10
Match: AT1G31460.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23270.1); Has 1251 Blast hits to 756 proteins in 185 species: Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176; Plants - 58; Viruses - 17; Other Eukaryotes - 331 (source: NCBI BLink). ) HSP 1 Score: 125.2 bits (313), Expect = 1.1e-28 Identity = 115/310 (37.10%), Postives = 160/310 (51.61%), Query Frame = 0
BLAST of CmoCh16G005670 vs. TAIR 10
Match: AT1G23270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31460.1); Has 901 Blast hits to 142 proteins in 59 species: Archae - 0; Bacteria - 69; Metazoa - 176; Fungi - 29; Plants - 28; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 6.7e-10 Identity = 57/164 (34.76%), Postives = 83/164 (50.61%), Query Frame = 0
BLAST of CmoCh16G005670 vs. TAIR 10
Match: AT2G41342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 8.4e-05 Identity = 29/75 (38.67%), Postives = 43/75 (57.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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