CmoCh16G005390 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G005390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 2631729 .. 2632726 (-)
RNA-Seq ExpressionCmoCh16G005390
SyntenyCmoCh16G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCACATTAGTGTGAGGAAATGGAACAAAGAACATAAAGTAGCTGTAGAGACACATTAAGCCAATGAACTCCACCTAACAAAAGCAACAGAAGTATAAGGACTACCATTGCCAAAAGCCTAAACCAGAGAGGGAGAGTGGAATTCTGTTTTTGGGAGGAAGAACAAAGCATTACCATTATAAACTTCCTAAACTATGAAACTTTTAAGAGAACTATAACTACTCATAAGCAGGCATTGAAAGGTGAGGATGATCCATAACTGAAACCTCCCATCTGGTTTGCAGCTACCCTTTTCTTTCTACTTCAAACATCTTTCCGGTTAAGGCACTGTTCGACCAGTAACGCCGAGTTTCTAAGATCGGAGTACGACACGTTATCCGTGAAGCAAAGTTGTCGACTAATATCTGGCCTTAACCCTTCATAGAACAGCCTAGCTTCCAAAGAATCGTCTGGATTTAGTTCAGAAACAAGAGAAGACAAGGTAATGAATTCTTCATCATACTCAATCACGGTTCTGTTTCCTTGTCCCAACTTCCAGAGTTCACGATGCTTCTCATGCTTCAACCAACTAGGGAAATATCTCTTATAGAATAAGTCCTTAAACTTCTCCCATGTCACTGCAGCCCCATCAGCATTCAAGTATCTTTTTGACACTATCCACCAAGAAAGTGCTGAATCTTTCAGTCTTAAACAAGCAAAGGAAACCTTTTGCTCGTCTGAACAGCCTATGCAATCAAAGATGTTCTCTAACCCCAAAACCCAGCGTTTAGCAACTAAGGGGTCGGTATCCTCTCCAAACCAAGGAGGTTGACAGACAAAAAACTGATTGAACTTGCTATTATGTTCTTCATTAGTCTGTCTAGCAGCAACTACCCTAAGCCCTTCCCTGATTAAACTGCAAATTTCGTCACAAACATCTCCCAAATTCATAGCTGGCTCAGCTGCAATTAGGGGTCTGTTAGTTTTCATTGTAGAGGCAGCTGGTTTCGCTTGA

mRNA sequence

ATGGACCACATTAGTGTGAGGAAATGGAACAAAGAACATAAAAATAAGTCCTTAAACTTCTCCCATGTCACTGCAGCCCCATCAGCATTCAAGTATCTTTTTGACACTATCCACCAAGAAAGTGCTGAATCTTTCAGTCTTAAACAAGCAAAGGAAACCTTTTGCTCGTCTGAACAGCCTATGCAATCAAAGATGTTCTCTAACCCCAAAACCCAGCGTTTAGCAACTAAGGGGTCGGTATCCTCTCCAAACCAAGGAGTCTGTCTAGCAGCAACTACCCTAAGCCCTTCCCTGATTAAACTGCAAATTTCGTCACAAACATCTCCCAAATTCATAGCTGGCTCAGCTGCAATTAGGGGTCTGTTAGTTTTCATTGTAGAGGCAGCTGGTTTCGCTTGA

Coding sequence (CDS)

ATGGACCACATTAGTGTGAGGAAATGGAACAAAGAACATAAAAATAAGTCCTTAAACTTCTCCCATGTCACTGCAGCCCCATCAGCATTCAAGTATCTTTTTGACACTATCCACCAAGAAAGTGCTGAATCTTTCAGTCTTAAACAAGCAAAGGAAACCTTTTGCTCGTCTGAACAGCCTATGCAATCAAAGATGTTCTCTAACCCCAAAACCCAGCGTTTAGCAACTAAGGGGTCGGTATCCTCTCCAAACCAAGGAGTCTGTCTAGCAGCAACTACCCTAAGCCCTTCCCTGATTAAACTGCAAATTTCGTCACAAACATCTCCCAAATTCATAGCTGGCTCAGCTGCAATTAGGGGTCTGTTAGTTTTCATTGTAGAGGCAGCTGGTTTCGCTTGA

Protein sequence

MDHISVRKWNKEHKNKSLNFSHVTAAPSAFKYLFDTIHQESAESFSLKQAKETFCSSEQPMQSKMFSNPKTQRLATKGSVSSPNQGVCLAATTLSPSLIKLQISSQTSPKFIAGSAAIRGLLVFIVEAAGFA
Homology
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BLAST of CmoCh16G005390 vs. ExPASy TrEMBL
Match: A0A0A0KYN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056705 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-08
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 15  NKSLNFSHVTAAPSAFKYLFDTIHQESAESFSLKQAKETFCSSEQPMQSKMFSNPKTQR 74
           N SLNF HVT  PSA K +  TIHQE+A SF  KQAKET CSSE  ++SK+FS  K QR
Sbjct: 90  NNSLNFCHVTVTPSASKSVCITIHQENAASFRRKQAKETLCSSEHRIKSKIFSKIKIQR 148

The following BLAST results are available for this feature:
BLAST of CmoCh16G005390 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G005390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYN95.1e-0862.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056705 PE=4 SV=1[more]
BLAST of CmoCh16G005390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G005390.1CmoCh16G005390.1mRNA