CmoCh16G004910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G004910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionVQ motif-containing protein 1-like
LocationCmo_Chr16: 2370768 .. 2370986 (+)
RNA-Seq ExpressionCmoCh16G004910
SyntenyCmoCh16G004910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

mRNA sequence

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

Coding sequence (CDS)

ATGGCAGCTTATTCGACTCGGGTTGTGATCATCGACACCAAGTATGTGCAAACGGATGCCAAGAGCTTCAAGACGGTGGTGCAGAAGCTGACGGGGAAGGACCCGGTGGCGGAGGAGAATCGACATGGTGACGGTGCCCGGAACTCGAGTTTTTTGAGAGATTCGTCGTTCAAGGAGTTCCAAAGAGTGCTGCGAGAGATGCCAAGAGTTGGTGAATGA

Protein sequence

MAAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAEENRHGDGARNSSFLRDSSFKEFQRVLREMPRVGE
Homology
BLAST of CmoCh16G004910 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.6e-07
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------FL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRVGE 73
          R     EF    REMP VGE
Sbjct: 71 RGVETTEFDSFFREMPPVGE 90

BLAST of CmoCh16G004910 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----------------------PVAEENR-- 66
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+                        + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 67  HGDGARNSSFLRDSSFKEFQRVLREMPRVGE 73
           HG G       R  +  EF R+ +EMP + E
Sbjct: 73  HGGGGGGG---RMGTTTEFDRLFKEMPHMEE 100

BLAST of CmoCh16G004910 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-20
Identity = 61/75 (81.33%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKD---PVAEENRHGDG-ARNSSFLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD    VAEE R   G ARNSS LRDSSF
Sbjct: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRVGE 73
          KEFQRVLREMPR+ E
Sbjct: 63 KEFQRVLREMPRIDE 77

BLAST of CmoCh16G004910 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-19
Identity = 58/75 (77.33%), Postives = 60/75 (80.00%), Query Frame = 0

Query: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA----EENRHGDGARNSSFLRDSSF 61
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD V     E  R    ARNSS LRDSSF
Sbjct: 3  ATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDSSF 62

Query: 62 KEFQRVLREMPRVGE 73
          KEFQRVLREMPR+ E
Sbjct: 63 KEFQRVLREMPRIDE 77

BLAST of CmoCh16G004910 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.8e-16
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 3  AYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDP--VAEENRH--GDGARNSSFLRDSSFK 62
          A STRVVIIDTKYV TDAKSFKTVVQKLTGKDP   AEE+R   G G+ +SS  RDSSFK
Sbjct: 6  APSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSSFK 65

Query: 63 EFQRVLREMPR 70
          EFQRVLREM +
Sbjct: 66 EFQRVLREMAK 76

BLAST of CmoCh16G004910 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 3  AYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPVAEENRHGDGARNSSF-LRDSSFKEFQ 62
          A+STRVVIIDTKYV TDAKSFKTVVQKLTGKDP  EENR   G  +S   + DSSFK+FQ
Sbjct: 6  AHSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAVEENRQTSGGWSSGLVITDSSFKKFQ 65

Query: 63 RVLREMPRV 71
            LREMP +
Sbjct: 66 TELREMPTI 74

BLAST of CmoCh16G004910 vs. ExPASy TrEMBL
Match: A0A0L9UJH2 (VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.4e-12
Identity = 44/72 (61.11%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----PVAEENRHGDGARNSSFL-RDSSFKEF 66
          +VVII+T+YV+TDA SFK+VVQKLTGKD     P A+ NRH  G    SFL RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 67 QRVLREMPRVGE 73
           R+LREMP + +
Sbjct: 72 DRLLREMPPIND 83

BLAST of CmoCh16G004910 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 54.3 bits (129), Expect = 4.7e-08
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0

Query: 7  RVVIIDTKYVQTDAKSFKTVVQKLTGKDPVA-----EENRHGDGARNSS---------FL 66
          +VV I+T+YVQTDA+SFKT+VQ+LTGK+ V      E +  G G ++SS           
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 67 RDSSFKEFQRVLREMPRVGE 73
          R     EF    REMP VGE
Sbjct: 71 RGVETTEFDSFFREMPPVGE 90

BLAST of CmoCh16G004910 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-06
Identity = 33/91 (36.26%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 7   RVVIIDTKYVQTDAKSFKTVVQKLTGKD-----------------------PVAEENR-- 66
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+                        + E+ R  
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 67  HGDGARNSSFLRDSSFKEFQRVLREMPRVGE 73
           HG G       R  +  EF R+ +EMP + E
Sbjct: 73  HGGGGGGG---RMGTTTEFDRLFKEMPHMEE 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q1G3U86.6e-0745.00VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1[more]
Q8VYI51.1e-0436.26VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KXJ05.4e-2081.33VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=... [more]
A0A5A7VBD12.7e-1977.33VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A6J1CNV74.8e-1676.06VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128... [more]
A0A6J1FVF71.4e-1571.01VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4... [more]
A0A0L9UJH25.4e-1261.11VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g0311... [more]
Match NameE-valueIdentityDescription
AT1G17147.14.7e-0845.00VQ motif-containing protein [more]
AT1G78410.17.5e-0636.26VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 10..35
e-value: 4.6E-11
score: 42.0
NoneNo IPR availablePANTHERPTHR34777:SF1VQ MOTIF-CONTAINING PROTEIN 10coord: 5..70
IPR039608VQ motif-containing protein 1/10PANTHERPTHR34777VQ MOTIF-CONTAINING PROTEIN 10coord: 5..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004910.1CmoCh16G004910.1mRNA