CmoCh16G004840 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G004840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	mitochondrial inner membrane protease subunit 1
Location	Cmo_Chr16: 2314707 .. 2318078 (+)
RNA-Seq Expression	CmoCh16G004840
Synteny	CmoCh16G004840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAAGTTCAGAGTGAAAGAGAGCTTCCATGGGACAGTGGAGAAGCATAGTAAAGGAGGCAATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCGACTCTGGTCTGTACTTCTCTCTTACTCCTTCCTCTTCCTCTGCCACAATTTGTCTCCTATTTCTTCCTTTGATTCATATGGAAAAAATTAATTTCTGGTGGTTTCAGGTGTACGGTCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTTGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTATGGATTGACGGACCTGAATTTAGTTATCTTAATTTGAAATTTGAAAATTCGTTTTGGTTTTGATTTTTGGTTTCTTGGTGTTGTTTGATTTGTTTCTTTGTTTAGTTTTTCTCTTTCTTTTTTGGGGTGGATGCTTAGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATATGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTAAGATTTATCAATCATCTTCATCATTACTTCTGCTTTTATTAGTTTTCCCTTCTTTTATGTTGTTCTTGGCATTGTTTTGATCATTGTTTACTTATGTATTAGTTTTCCCTTCTTTTATGTTGTACTTGAGGAATGAATTGTTTTGATCATTGTTTACTTATGTTTCTTCCTTCAATGGTTGTTATCCTTGAGTTTCCAAATGTTGGTTGGATGGGCTTTTAGTATAACGGGTTTGTTTGCCTTTTTCTATGCAATCATTTATTTTAATGTTACATTACAAATCTGTTGGAAGAGATTCAAACTGACGACCTTGTGGGGGTCTTAATGCAACCACTTGATTGTGTAATTGTTTACTTGCTATATGCATCGCTATTCATGCAGCTGGTTTTTGGGTACTTGAGTTTGAAAATTTTGGATCTTGAGAAATTTCTGATCTCGTGGTTTTTCTATTCACTCATGGTTTATAATTTGGATCTTGTTCTAGTTATTTAAGAAGTCAGCAGGATTATGAAAGTTCTTTCTAATTACATGGGGATAATATCTTTCTTCTGTTCATTGGAACTTTGCATGGTAGCTTTTTTCTAGACTCGTATACATTTCTCCCTCATTTCTTTATCTTTCTTGAATATTTCTTTGTTCTTCTGATGTTAGGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGAACTCAGATTGGCCTAATTTAAAAGATAAATTGCTGGTATTACGTTAAGCTTAGTTTTTCCTTTCTCATTGTAACTGTTGTCCTTTTGGCTATCTGTTTATAGGATTAGGTTTATTTATTTACCATTCCTTTACGTCTAAAAGAGTTAAAATCTAATATAATTATTTGTGGGATGGAATTTAGTGTACACATTTCTGTTTTGACCACTAATTCTAATAGATATCGTAGTCTCTTCACTTCACATCAGATTCTTGATGGACTGGCCTAATGAAGTTCTCGATTGATAAAAAAAAGAAAACAAAATTATACAGCTTTTGAATAGCTCTTTCTTCAAAGGAAAAGATACCGAGATATGAGATGATGTTGTAATGGCGATTTGATCGAATCTATGGTCAGATAGGAAGTATATAATTTTTAGAGGTATTTGTAAGGTGTGGAGGGAGGTGTTTGATCTTGCAAAATATAGTAGTTCTCGTTGGGTTTCATAGATAAGATGTTTAAAATCTACTCCTTTTGGGTTACTTTTTCAAATTGGGGAGGCTTCTTGTATAATTCTTGAATGGGCTAGTGACTTGTGTTTTGGGAACTTATAAGGTTCTTGGGTGGTTCTTGCAAAAAACGGATAATGCTTGGCTCGTGCAAGTATTGAGCTATACAAGATGGTCTTCAATCTAGAAGAAGGTTTTGTAGTCTGTTTATGATGAACAAAAAGTTCAAATGACAATGGAATTGTGTAGCAGTGATGGTTTTTCACAGAATGGATCTTAGAGGAAGGCAGAGGAGGTAAAGGAGTATCTCTCTTTCTTTTCATAGGCAAACCCATGTTGAAGAAATATGTTGCGAGAGATCTTGAGAGCTAGAAGGGATCTTGAGAGCTAGAAGTAAAGTCTAAATAACTCCACATGAGAGTTGGAAATCTTGAAGTAGAATAAATTTTGATATTCCCAAAAGAATCATCATTTTGACCATATAACCTATGGTTACAAATTTTGATGTAGGTAGTAACCGTCCAAGTCGACCCCTAGCAGATATTGTCTGTTTTGATCTGTTATATATTGCAAAGAGTATTTTATAAGGGTATAGAAACCTCTTCCTAGTAGACACATTTTAAAATCGTGAGATTGACAATAATGCGTCACGGGCTAAAGCGGACAATATCTATTAGTAGTGGGCTTGGGCTATTATATAAACTAACTTTACTGCTTCACGGTTTTAAAACGCATCTATTAGGCTGAAGTTTCCACCCCTTATAAGGAACGTTTCGTTCCTCTCTCCAACCAATGTGGGATCTTCCATATAACTTGTATCCATGAAGATAAAGAACAATAGAGTTTATTGTTTGCTTCGGTTTAGTTAAATTTGAGAACGTTTCTGAAGTGTTTTCTAATGGGAGTAGTATTATTTTTTGTACTCCACATGAAATTATGACAGGAAGCATCTCTTTCAAATGCGTTGCTGACAACGGGGGGGATCTATGCTTCACTTCTTTGGCAGGTGATCCATTTTGGCATTGACATATTTCTCTGTGCTTTTTTAATTTTCAGGACTTCATTTTGTGGCCATTTTAAATGAGCTATTGCTGAGACCTGGGCCTAGTCCAATATTACATCTTTGCCATTGATCCTTACTTCAATAGCTGTTACTTCTTTGTTAGTAGGTTCAGATTGATCTAAAAGGATATAGATTTCCAGATTTTGCATTTTCAATCCATGTAGAGTTCATGTTTCATTTTCACAATCGTAAATCGCAATAAGCTTATTTAATTTTAGTTGTTTTAGTTCAAGCCTTGTAGGGTGGGAATTGAATCTCCTTTGAGATGGGAATCCTTTGAGATGGTAAACCATGCCTCTATTCATTGAGTTAGGCTTAGAATAAGAAATCAAACTTATTCGAACGATGTAAATCTTATCTCAACCAATTTTTTTTAGTCTTTGCTGTGGGAATGCGTTGTTAAATGTCCG

mRNA sequence

AGAGAAAGTTCAGAGTGAAAGAGAGCTTCCATGGGACAGTGGAGAAGCATAGTAAAGGAGGCAATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCGACTCTGGTGTACGGTCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTTGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATATGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGAACTCAGATTGGCCTAATTTAAAAGATAAATTGCTGGAAGCATCTCTTTCAAATGCGTTGCTGACAACGGGGGGGATCTATGCTTCACTTCTTTGGCAGGTGATCCATTTTGGCATTGACATATTTCTCTGTGCTTTTTTAATTTTCAGGACTTCATTTTGTGGCCATTTTAAATGAGCTATTGCTGAGACCTGGGCCTAGTCCAATATTACATCTTTGCCATTGATCCTTACTTCAATAGCTGTTACTTCTTTGTTAGTAGGTTCAGATTGATCTAAAAGGATATAGATTTCCAGATTTTGCATTTTCAATCCATGTAGAGTTCATGTTTCATTTTCACAATCGTAAATCGCAATAAGCTTATTTAATTTTAGTTGTTTTAGTTCAAGCCTTGTAGGGTGGGAATTGAATCTCCTTTGAGATGGGAATCCTTTGAGATGGTAAACCATGCCTCTATTCATTGAGTTAGGCTTAGAATAAGAAATCAAACTTATTCGAACGATGTAAATCTTATCTCAACCAATTTTTTTTAGTCTTTGCTGTGGGAATGCGTTGTTAAATGTCCG

Coding sequence (CDS)

ATGGGACAGTGGAGAAGCATAGTAAAGGAGGCAATCGATCGCACAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTTACCAACAACTATCTCTGTTCTCCGACTCTGGTGTACGGTCCTAGCATGCTTCCGACCTTGAATCTGACCGGCGATGTTCTTTTGGCTGAACGTGTGTCGCACCGAGTGGGCAGGGTTGGCCCCGGCGACGTCGTGCTTGTTCGATCTCCTCTGAATCCGAGGAAGACCTTGACGAAGCGCATTGTGGGTGTTGAGGGGGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATAGGTGTCTGACGGCTGTGGTTCCGAAAGGTCATGTGTGGATTCAAGGAGATAATATGTATGCTTCTAGTGATTCGCGGCATTTCGGACCTGTACCTTATGGTCTGATTGACGGGAAAGTGTTTTTGAGAGTCTGGCCACCAGATTGCTTTGGACCATTGGAACACTGA

Protein sequence

MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH

Homology

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BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot
Match: Q28I39 (Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis OX=8364 GN=immp1l PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-29
Identity = 63/156 (40.38%), Postives = 91/156 (58.33%), Query Frame = 0


Query: 5   RSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRVG 64
           R IV + +       ++ C+ H    Y+    +  GPSM PT+    DVLL + +S    
Sbjct: 3   RRIVGKTLGLLGYTIQYGCIAHCAFEYIGEVVICSGPSMEPTIR-NYDVLLCDNLSRHFF 62

Query: 65  RVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDN 124
            +  GD+++ +SP  P   + KR++G+EGDKV      A   R     VPKGHVW++GDN
Sbjct: 63  SIHKGDIIVAKSPDKPSVNICKRVIGLEGDKVCMSSPSALLKR--HTYVPKGHVWLEGDN 122

Query: 125 MYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLE 161
           +  S+DSR +GPVPY LI G++ LRVWP + FGPL+
Sbjct: 123 LDNSTDSRSYGPVPYALIRGRICLRVWPLESFGPLK 155

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BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot
Match: Q9CQU8 (Mitochondrial inner membrane protease subunit 1 OS=Mus musculus OX=10090 GN=Immp1l PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-28
Identity = 56/154 (36.36%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 5   RSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRVG 64
           R ++ +A        ++ C+ H    Y+    +  GPSM PT+    D++ AE +S    
Sbjct: 3   RGVLGKAFRLAGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ-NSDIVFAENLSRHFY 62

Query: 65  RVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKV-NFFPDPANSNRCLTAVVPKGHVWIQGD 124
            +  GD+V+ +SP +P+  + KR++G+EGDK+ +  P     +R   + VP GHVW++GD
Sbjct: 63  GIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILSTSPSDVFKSR---SYVPTGHVWLEGD 122

Query: 125 NMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 158
           N+  S+DSR++GP+PYGLI G++F ++WP   FG
Sbjct: 123 NLQNSTDSRYYGPIPYGLIRGRIFFKIWPFSDFG 152

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BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot
Match: Q96LU5 (Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens OX=9606 GN=IMMP1L PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-27
Identity = 54/153 (35.29%), Postives = 91/153 (59.48%), Query Frame = 0


Query: 5   RSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRVG 64
           R ++ +         ++ C+ H    Y+    +  GPSM PT+    D++ AE +S    
Sbjct: 3   RGVLGKTFRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ-NSDIVFAENLSRHFY 62

Query: 65  RVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDN 124
            +  GD+V+ +SP +P+  + KR++G+EGDK+     P++  +   + VP GHVW++GDN
Sbjct: 63  GIQRGDIVIAKSPSDPKSNICKRVIGLEGDKI-LTTSPSDFFKS-HSYVPMGHVWLEGDN 122

Query: 125 MYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFG 158
           +  S+DSR +GP+PYGLI G++F ++WP   FG
Sbjct: 123 LQNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFG 152

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BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot
Match: O74800 (Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=imp1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.1e-25
Identity = 56/136 (41.18%), Postives = 84/136 (61.76%), Query Frame = 0


Query: 18  IAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRVGR-VGPGDVVLVRS 77
           + +    +H  + YL    +  GPSM+PTLN  G+ +L +++  R  R    GDVV+   
Sbjct: 11  VVQIAAFVHQIHEYLFQVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAK 70

Query: 78  PLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNMYASSDSRHFGP 137
           P + ++ + KRI+G+ GD +  + DP +SN+ +T  +P GHVW+ GDN+  S DSR++GP
Sbjct: 71  PSDSKQHVCKRIIGMPGDTI--YVDPTSSNKKIT--IPLGHVWLAGDNIAHSLDSRNYGP 130

Query: 138 VPYGLIDGKVFLRVWP 153
           VP GLI  KV  RVWP
Sbjct: 131 VPMGLIKAKVIARVWP 142

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BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot
Match: Q6AZD4 (Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-19
Identity = 54/127 (42.52%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 38  VYGPSMLPTLNLTG----DVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEG 97
           V G SM P+LN  G    DV+L  R S R   V  GD+V V SP NP++ + KR++G+EG
Sbjct: 38  VEGASMQPSLNPDGESSPDVVLLNRWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEG 97

Query: 98  DKVNFFPDPANSNRCLTAVVPKGHVWIQGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPP 157
           D   F       NR +   VP GH+WI+GD+   S DS  FGPV  GL+ G+    +WPP
Sbjct: 98  D---FIKTLGYKNRYVR--VPDGHLWIEGDHHGHSFDSNAFGPVSLGLVHGRASHIIWPP 157

Query: 158 DCFGPLE 161
             +  +E
Sbjct: 158 SRWQRIE 159

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BLAST of CmoCh16G004840 vs. ExPASy TrEMBL
Match: A0A6J1ETV4 (mitochondrial inner membrane protease subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111437509 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 5.3e-92
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60
           MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS
Sbjct: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60

Query: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120
           HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI
Sbjct: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120

Query: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH 162
           QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH
Sbjct: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH 161

[Close]

BLAST of CmoCh16G004840 vs. ExPASy TrEMBL
Match: A0A6J1JAM2 (mitochondrial inner membrane protease subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111482774 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.6e-91
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60
           MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS
Sbjct: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60

Query: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120
           HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI
Sbjct: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120

Query: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH 162
           QGDN+YASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH
Sbjct: 121 QGDNVYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLEH 161

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BLAST of CmoCh16G004840 vs. ExPASy TrEMBL
Match: A0A1S3CP31 (mitochondrial inner membrane protease subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503147 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.7e-83
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60
           MGQWRSIVKEAIDRT IIAKFLCLLHVTNNY+CSPTLVYGPSMLPTLNLTGDVLLAE VS
Sbjct: 34  MGQWRSIVKEAIDRTVIIAKFLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVS 93

Query: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120
           HRVGRVGPGDVVLVRSP NPRK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWI
Sbjct: 94  HRVGRVGPGDVVLVRSPRNPRKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWI 153

Query: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLE 161
           QGDN+YAS DSRHFGPVPYGLI+GK FLRVWPPDCFGPL+
Sbjct: 154 QGDNVYASRDSRHFGPVPYGLIEGKAFLRVWPPDCFGPLD 193

[Close]

BLAST of CmoCh16G004840 vs. ExPASy TrEMBL
Match: A0A5D3CYH6 (Mitochondrial inner membrane protease subunit 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00960 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 7.7e-83
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60
           MGQWRSIVKEAIDRT IIAKFLCLLHVTNNY+CSPTLVYGPSMLPTLNLTGDVLLAE VS
Sbjct: 34  MGQWRSIVKEAIDRTVIIAKFLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVS 93

Query: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120
           HRVGRVGPGDVVLVRSP NPRK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWI
Sbjct: 94  HRVGRVGPGDVVLVRSPRNPRKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWI 153

Query: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLE 161
           QGDN+YAS DSRHFGPVPYGLI+GK FLRVWPPDCFGPL+
Sbjct: 154 QGDNVYASRDSRHFGPVPYGLIEGKAFLRVWPPDCFGPLD 193

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BLAST of CmoCh16G004840 vs. ExPASy TrEMBL
Match: A0A0A0KVI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082300 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.1e-81
Identity = 143/160 (89.38%), Postives = 151/160 (94.38%), Query Frame = 0


Query: 1   MGQWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVS 60
           MGQWRS+VKEAIDRT IIAKFLCLLHVTNNY+CSPTLVYGPSMLPTLNLTGDVLLAE VS
Sbjct: 27  MGQWRSVVKEAIDRTVIIAKFLCLLHVTNNYICSPTLVYGPSMLPTLNLTGDVLLAEHVS 86

Query: 61  HRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWI 120
           HRVGRVGPGDVVLVRSP NPRK LTKRIVGVEGDKVNF+PDPANSN+  +AVVPKGHVWI
Sbjct: 87  HRVGRVGPGDVVLVRSPRNPRKMLTKRIVGVEGDKVNFYPDPANSNQYQSAVVPKGHVWI 146

Query: 121 QGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPLE 161
           QGDN+YAS DSRHFGPVPYGLI+GK FLRVWPPDCFG L+
Sbjct: 147 QGDNVYASRDSRHFGPVPYGLIEGKAFLRVWPPDCFGRLD 186

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BLAST of CmoCh16G004840 vs. TAIR 10
Match: AT1G53530.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-61
Identity = 102/157 (64.97%), Postives = 128/157 (81.53%), Query Frame = 0


Query: 3   QWRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHR 62
           QWR   KEA +  +I+AKFLCLLHVT+ Y+ S T V+GPSMLPTLNLTGDV+LAE +SHR
Sbjct: 11  QWRGTAKEAFENVSIVAKFLCLLHVTDRYIISTTHVHGPSMLPTLNLTGDVILAEHLSHR 70

Query: 63  VGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQG 122
            G++G GDVVLVRSP +P++ +TKRI+G+EGD++ F  DP   +  ++ +VPKGHVWIQG
Sbjct: 71  FGKIGLGDVVLVRSPRDPKRMVTKRILGLEGDRLTFSADPLVGDASVSVLVPKGHVWIQG 130

Query: 123 DNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPL 160
           DN+YAS+DSRHFGPVPY LI+GK  LRVWPP+ FG L
Sbjct: 131 DNLYASTDSRHFGPVPYSLIEGKALLRVWPPEYFGSL 167

[Close]

BLAST of CmoCh16G004840 vs. TAIR 10
Match: AT1G53530.2 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 181.0 bits (458), Expect = 7.5e-46
Identity = 78/117 (66.67%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 43  MLPTLNLTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDP 102
           MLPTLNLTGDV+LAE +SHR G++G GDVVLVRSP +P++ +TKRI+G+EGD++ F  DP
Sbjct: 1   MLPTLNLTGDVILAEHLSHRFGKIGLGDVVLVRSPRDPKRMVTKRILGLEGDRLTFSADP 60

Query: 103 ANSNRCLTAVVPKGHVWIQGDNMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPL 160
              +  ++ +VPKGHVWIQGDN+YAS+DSRHFGPVPY LI+GK  LRVWPP+ FG L
Sbjct: 61  LVGDASVSVLVPKGHVWIQGDNLYASTDSRHFGPVPYSLIEGKALLRVWPPEYFGSL 117

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BLAST of CmoCh16G004840 vs. TAIR 10
Match: AT1G29960.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-44
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 0


Query: 4   WRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRV 63
           W +  +EA+    ++AK  C LHVT NYL      YGPSM PTL+ +G+VLLAER+S R 
Sbjct: 9   WNTASREAMKSGVLLAKLYCFLHVTTNYLGFMAYAYGPSMTPTLHPSGNVLLAERISKRY 68

Query: 64  GRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGD 123
            +   GD+V++RSP NP KT  KR++G+EGD ++F  D   S+   T VVPKGHV++QGD
Sbjct: 69  QKPSRGDIVVIRSPENPNKTPIKRVIGIEGDCISFVIDSRKSDESQTIVVPKGHVFVQGD 128

Query: 124 NMYASSDSRHFGPVPYGLIDGKVFLRVWPPDCFGPL 160
             + S DSR+FG VPYGLI G+V  RVWP   FGPL
Sbjct: 129 YTHNSRDSRNFGTVPYGLIQGRVLWRVWPFQDFGPL 164

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BLAST of CmoCh16G004840 vs. TAIR 10
Match: AT1G23465.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-42
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0


Query: 4   WRSIVKEAIDRTAIIAKFLCLLHVTNNYLCSPTLVYGPSMLPTLNLTGDVLLAERVSHRV 63
           W +  +EA+     +AK  C LHVT NYL      YGPSM+PTL+ +G++LLAER+S R 
Sbjct: 9   WNTASREAMKSGMFVAKVYCFLHVTTNYLGFMAYAYGPSMIPTLHPSGNMLLAERISKRY 68

Query: 64  GRVGPGDVVLVRSPLNPRKTLTKRIVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGD 123
            +   GD+V++RSP NP KT  KR+VGVEGD ++F  DP  S+   T VVPKGHV++QGD
Sbjct: 69  QKPSRGDIVVIRSPENPNKTPIKRVVGVEGDCISFVIDPVKSDESQTIVVPKGHVFVQGD 128

Query: 124 NMYASSDSRHFGPVPYGLIDGKVFLRV 151
             + S DSR+FGPVPYGLI G+V  RV
Sbjct: 129 YTHNSRDSRNFGPVPYGLIQGRVLWRV 155

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BLAST of CmoCh16G004840 vs. TAIR 10
Match: AT3G08980.1 (Peptidase S24/S26A/S26B/S26C family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-17
Identity = 48/126 (38.10%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 33  CSPTLVYGPSMLPTLN-----LTGDVLLAERVSHRVGRVGPGDVVLVRSPLNPRKTLTKR 92
           CS   V G SM PT N        D +L ++   +  +   GDVV+  SP +      KR
Sbjct: 29  CSVVPVRGDSMSPTFNPQRNSYLDDYVLVDKFCLKDYKFARGDVVVFSSPTHFGDRYIKR 88

Query: 93  IVGVEGDKVNFFPDPANSNRCLTAVVPKGHVWIQGDNMYASSDSRHFGPVPYGLIDGKVF 152
           IVG+ G+ ++   D           VP+GH W++GDN  +S DSR FGP+P GLI G+V 
Sbjct: 89  IVGMPGEWISSSRDVIR--------VPEGHCWVEGDNKTSSLDSRSFGPIPLGLIQGRVT 146

Query: 153 LRVWPP 154
             +WPP
Sbjct: 149 RVMWPP 146

The following BLAST results are available for this feature:

BLAST of CmoCh16G004840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q28I39	2.8e-29	40.38	Mitochondrial inner membrane protease subunit 1 OS=Xenopus tropicalis OX=8364 GN...	[more]
Q9CQU8	1.8e-28	36.36	Mitochondrial inner membrane protease subunit 1 OS=Mus musculus OX=10090 GN=Immp...	[more]
Q96LU5	3.4e-27	35.29	Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens OX=9606 GN=IMMP1...	[more]
O74800	4.1e-25	41.18	Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (st...	[more]
Q6AZD4	2.0e-19	42.52	Mitochondrial inner membrane protease subunit 2 OS=Danio rerio OX=7955 GN=immp2l...	[more]

BLAST of CmoCh16G004840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETV4	5.3e-92	100.00	mitochondrial inner membrane protease subunit 1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JAM2	1.6e-91	99.38	mitochondrial inner membrane protease subunit 1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CP31	7.7e-83	90.63	mitochondrial inner membrane protease subunit 1 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A5D3CYH6	7.7e-83	90.63	Mitochondrial inner membrane protease subunit 1 isoform X1 OS=Cucumis melo var. ...	[more]
A0A0A0KVI4	1.1e-81	89.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082300 PE=4 SV=1	[more]

BLAST of CmoCh16G004840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53530.1	1.7e-61	64.97	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G53530.2	7.5e-46	66.67	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G29960.1	1.1e-44	52.56	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT1G23465.1	1.7e-42	53.74	Peptidase S24/S26A/S26B/S26C family protein	[more]
AT3G08980.1	1.1e-17	38.10	Peptidase S24/S26A/S26B/S26C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000223	Peptidase S26A, signal peptidase I	PRINTS	PR00727	LEADERPTASE	coord: 84..96 score: 48.53 coord: 113..132 score: 48.57 coord: 31..47 score: 38.66
IPR000223	Peptidase S26A, signal peptidase I	TIGRFAM	TIGR02227	TIGR02227	coord: 17..98 e-value: 1.5E-13 score: 48.9
None	No IPR available	GENE3D	2.10.109.10	Umud Fragment, subunit A	coord: 28..156 e-value: 5.2E-29 score: 102.8
None	No IPR available	PANTHER	PTHR12383	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	coord: 3..159
None	No IPR available	PANTHER	PTHR12383:SF30	PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN	coord: 3..159
IPR019533	Peptidase S26	PFAM	PF10502	Peptidase_S26	coord: 110..151 e-value: 3.0E-9 score: 37.1 coord: 17..98 e-value: 2.3E-13 score: 50.4
IPR019533	Peptidase S26	CDD	cd06530	S26_SPase_I	coord: 34..146 e-value: 7.17529E-25 score: 89.5671
IPR019758	Peptidase S26A, signal peptidase I, conserved site	PROSITE	PS00761	SPASE_I_3	coord: 118..131
IPR036286	LexA/Signal peptidase-like superfamily	SUPERFAMILY	51306	LexA/Signal peptidase	coord: 31..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004840.1	CmoCh16G004840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006627	protein processing involved in protein targeting to mitochondrion
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0042720	mitochondrial inner membrane peptidase complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity