CmoCh16G004690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G004690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RAB GTPase homolog A1B
Location	Cmo_Chr16: 2239375 .. 2241916 (+)
RNA-Seq Expression	CmoCh16G004690
Synteny	CmoCh16G004690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGCAAACGTGGACCTTCCTTCACAACTTCCCTTTCTTTTATTGATTTCACGCACTTCCTCCCACTTGATTTTGCATTTCATTGATTCTCTCTCTCTCGCTCTCTCTCTGGTTCGATTCTTCTTCTTCTTCCTCGTAAAGTTTGAAGTAAATCGAAGCAACAATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTTTTTAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAACGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTTTTGTTTCTTCTCTCATCTTGATTTATCTTCGTTTCTTGCAATCTCCTTGGTTTTCCTTCCTTTGATTTCCGTCTGAGTTGTTTCTTCGCGTTTTGGATTATTGTTGCTGCTTACTGTTTTCTGTGTTGGTTGAGTGTTCTGGTTTCCGAGTTTGGTTAATTAGCGTGTTCTGGTTCGCCGAGCGGGTTGTAATAACCTAGATCTGTTTGATGGGAGGTGTTTTCTTATCAATCTTGTGTTCTTATAGTTCAATCGAGTGTTTTAATGCTCTCGAAGTTGGTTCTGATGTCTTCTTACTGCGATATGTTAAGGCTTTGTTCTTCAACTTTCATGGTTGGAAGGGTAACAACGCTGGTTGATGATGGTTAAAAAAGCTTAGATTCAGAAGGCACTGAAGAATTCATTGATTAGATGTTAGTGAAGTAGTTGGGATTCGGAATTGTCTGAGCGGACTCTTGTTGAGGAAGATTATGGCTTCTGTTTCGCAGATCGTGTGCTCCTCTGAGCCATTTCATTTTCAAATATCTTATAATTTGAATTAGCAACAGAAAGTTTTGATTCTTCCAATTATTCTTTCCCCTGTCTCCCGAGAAAGTATAAAGGTATCTGGCTTCCTTCTACAGGAATTCGTCTCCTGTTTTCCATGGGGGATATATTGAAATTCTCTTTCATGCATTGTAGCTCCTCAACCTTTTGATTTGTTTCTCAAAATATCTCCGGGAGGAAAAAAAAAAAAAAAATTATTTCAATGAAATTTCTATTCTGGGTTAGCAGGGTTATTGAACACAATAATGCCATTGATTTCCTATTTTAAGAGAAGCTCAAACTGACGCTATAATGACTTAGAAGTAGTTTAGAGTCTCTTTCTAACAAGAGAAACTATGCCATCTGGGGATCTCGTTGTATGTGGAACATTTGTGTAACAATTCAAGCCCACCTCTAGTAGACATTATTCACTTTAGTAACGTATCGCCCTCAGCCTCATAGTTTCAAAATGTGTCTGCTAGGGAGAGTTTTCCACAGGGAATGCTTCGTTCCCTCTCCAACTGATGGGATCTTGAGCTGTTACATTTTTCTCATAGTTTCTTGGGCTTACTATTCTCACTCGAACTCAATGACACCATGGTACAACCTATAGAACAGATCTTGTTCTAGTAAGGTCGTCGCTCCTAGTCACTTTGTTATGAACTTTTATTGGTTTTGTCTAATTAGCCCAAGCTCTCATAAAAACTGAAGCTTCTATGATGGATTGCCTAGAAGATATAAAGGTGCCACTGCCCCCTTCCACAAAATAAGCATCTGACAAAGGAAATGAAATGATCTGCAATTCTTGATGTGTTTTCTAACTCTCGATTAACTATGATTTTACCATTTGTTTTTGTTATACCTTTAATGATGCTCATGAATGTTGATTAGTAGATCGCAAAATTCTTTTCTAATAGTTAAGAAGATGGCTTCATCGTTCATCAATAAGAGTCTGGTAGACTGATTGTGCGATCTAGTTTACAATCTCTCAAGTTTTCTTTAAATTGAATGAGCTGTTCAGATCTTACATGGGTTCTATGTCTATAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGAGCAGTTGGTGCACTCCTCGTATACGATGTCACTCGTCATGCGACATTCGAGAACGTCGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACTGAAGATGGAAAGTCGTACGCCGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTCGAAGGCGGAGAAAATGGCTCTGCTGCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAACCAGAATCAAATGTTGCTCGAGCTAACTTCGGTAATCTGCCTAGATGATTTTCGATTTCATGTAATGTAATATATTCTTTCCTTGAAGATGGTTATGAAGAAAAAGGAAGATATATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCTAG

mRNA sequence

AATAAGCAAACGTGGACCTTCCTTCACAACTTCCCTTTCTTTTATTGATTTCACGCACTTCCTCCCACTTGATTTTGCATTTCATTGATTCTCTCTCTCTCGCTCTCTCTCTGGTTCGATTCTTCTTCTTCTTCCTCGTAAAGTTTGAAGTAAATCGAAGCAACAATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTTTTTAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAACGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGAGCAGTTGGTGCACTCCTCGTATACGATGTCACTCGTCATGCGACATTCGAGAACGTCGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACTGAAGATGGAAAGTCGTACGCCGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTCGAAGGCGGAGAAAATGGCTCTGCTGCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAACCAGAATCAAATATGGTTATGAAGAAAAAGGAAGATATATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCTAG

Coding sequence (CDS)

ATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTTTTTAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAACGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGAGCAGTTGGTGCACTCCTCGTATACGATGTCACTCGTCATGCGACATTCGAGAACGTCGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACTGAAGATGGAAAGTCGTACGCCGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTCGAAGGCGGAGAAAATGGCTCTGCTGCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAACCAGAATCAAATATGGTTATGAAGAAAAAGGAAGATATATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCTAG

Protein sequence

MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSAASVPAQGEKINIKDESGLTRIKYGYEEKGRYIYIPKTFNLAALQKEEYLS

Homology

[Close]

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot
Match: Q40194 (Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.7e-96
Identity = 171/211 (81.04%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           M GYR DD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+TLNVD+K
Sbjct: 1   MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFEN  RWLKEL++HTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNKSDLRHLVAVPTEDGKS+AE+ESLYF+ETSALEA NVE AF EVLTQIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTR 212
           +AVE G++GS++ +P++G+ IN+K++S + +
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLK 211

[Close]

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 7.4e-95
Identity = 180/206 (87.38%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTL VD K
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFENVDRWLKELKNHTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHL+AVPTEDGKSYAE+ESL F+ETSALEA NVE AFAEVLTQIY I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDE 207
           K VE GE+G+ ASVP +GEKI +K++
Sbjct: 181 KQVEAGEDGN-ASVP-KGEKIEVKND 204

[Close]

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 1.8e-93
Identity = 177/212 (83.49%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+LNVD K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+ WLKEL+NHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AEKESLYF+ETSALEA NVE AFAEVLTQI+HIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINI-KDESGLTR 212
           KA+E      +A+VP++G+KI+I KD S + +
Sbjct: 181 KAMEAA--SESANVPSKGDKIDIGKDVSAVKK 210

[Close]

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.4e-93
Identity = 172/215 (80.00%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT++LN+D+K
Sbjct: 1   MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH T+ENV RWLKEL++HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNKSDLRHLVAV T++ K  AE+E LYF+ETSALEA NVE AF E LTQIY IVSK
Sbjct: 121 VMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIKYG 216
           KAVE G+ G+ +S P +GE INIKDE G +  K+G
Sbjct: 181 KAVEAGDEGATSSAPPKGETINIKDE-GSSWKKFG 214

[Close]

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot
Match: Q9SN35 (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 9.1e-93
Identity = 170/203 (83.74%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+LNV+ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+RWL+EL++HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AE ESLYF+ETSALE+ NVE AF+EVLTQIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINI 204
           KA+E GE+  + +VP++GEKI++
Sbjct: 181 KAMEAGED--SGNVPSKGEKIDV 201

[Close]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL
Match: A0A6J1EUD9 (ras-related protein Rab11D-like OS=Cucurbita moschata OX=3662 GN=LOC111437652 PE=4 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 8.2e-113
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KAVEGGENGSAASVPAQGEKINIKDESGLTRIK
Sbjct: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 213

[Close]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL
Match: A0A6J1CPC3 (ras-related protein Rab11D-like OS=Momordica charantia OX=3673 GN=LOC111012877 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111
Identity = 210/213 (98.59%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVPTEDGKSYAE+ESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KAVEGGENGSA+SVPAQGEKINIKDESGL RIK
Sbjct: 181 KAVEGGENGSASSVPAQGEKINIKDESGLNRIK 213

[Close]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL
Match: A0A6J1IX83 (ras-related protein RABA1b-like OS=Cucurbita maxima OX=3661 GN=LOC111481478 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111
Identity = 209/213 (98.12%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVD K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVPTEDGKSYAE+ESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KAVEGGENGSA+SVPAQGEKINIKDESGL RIK
Sbjct: 181 KAVEGGENGSASSVPAQGEKINIKDESGLNRIK 213

[Close]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL
Match: A0A6J1J1X3 (ras-related protein RABA1b-like OS=Cucurbita maxima OX=3661 GN=LOC111482671 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111
Identity = 210/213 (98.59%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTL VDSK
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KAVEGGENGSA SVPAQGEKINIKDESGL RIK
Sbjct: 181 KAVEGGENGSATSVPAQGEKINIKDESGLNRIK 213

[Close]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL
Match: A0A0A0KXK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082460 PE=4 SV=1)

HSP 1 Score: 409.5 bits (1051), Expect = 1.0e-110
Identity = 208/213 (97.65%), Postives = 211/213 (99.06%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVD K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAVPTEDGKSYAE+ESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KAVEGGENGSA++VPAQGEKINIKDESGL RIK
Sbjct: 181 KAVEGGENGSASAVPAQGEKINIKDESGLNRIK 213

[Close]

BLAST of CmoCh16G004690 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B )

HSP 1 Score: 348.2 bits (892), Expect = 5.3e-96
Identity = 180/206 (87.38%), Postives = 191/206 (92.72%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYR +DDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTL VD K
Sbjct: 1   MAGYRVEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR ATFENVDRWLKELKNHTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHL+AVPTEDGKSYAE+ESL F+ETSALEA NVE AFAEVLTQIY I SK
Sbjct: 121 VMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDE 207
           K VE GE+G+ ASVP +GEKI +K++
Sbjct: 181 KQVEAGEDGN-ASVP-KGEKIEVKND 204

[Close]

BLAST of CmoCh16G004690 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C )

HSP 1 Score: 343.6 bits (880), Expect = 1.3e-94
Identity = 177/212 (83.49%), Postives = 195/212 (91.98%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFATR+LNVD K
Sbjct: 1   MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+ WLKEL+NHTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AEKESLYF+ETSALEA NVE AFAEVLTQI+HIVSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINI-KDESGLTR 212
           KA+E      +A+VP++G+KI+I KD S + +
Sbjct: 181 KAMEAA--SESANVPSKGDKIDIGKDVSAVKK 210

[Close]

BLAST of CmoCh16G004690 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D )

HSP 1 Score: 341.3 bits (874), Expect = 6.5e-94
Identity = 170/203 (83.74%), Postives = 192/203 (94.58%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATR+LNV+ K
Sbjct: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRH+TFENV+RWL+EL++HTD NIV
Sbjct: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VMLVGNKSDLRHLVAV TED KS+AE ESLYF+ETSALE+ NVE AF+EVLTQIYH+VSK
Sbjct: 121 VMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINI 204
           KA+E GE+  + +VP++GEKI++
Sbjct: 181 KAMEAGED--SGNVPSKGEKIDV 201

[Close]

BLAST of CmoCh16G004690 vs. TAIR 10
Match: AT1G06400.1 (Ras-related small GTP-binding family protein )

HSP 1 Score: 327.4 bits (838), Expect = 9.6e-90
Identity = 160/211 (75.83%), Postives = 188/211 (89.10%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           MAGYRAD++YDYLFK+VLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFAT+T  V+ K
Sbjct: 1   MAGYRADEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           V+KAQIWDTAGQERYRAITSAYYRGAVGALL+YDVTRHATFEN  RWL+EL+ HTD NIV
Sbjct: 61  VVKAQIWDTAGQERYRAITSAYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           VML+GNK DLRHLVAV TE+ K++AE+ESLYF+ETSAL+A NVE AF EVLTQI+ IVSK
Sbjct: 121 VMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSK 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTR 212
           ++V+GG  G +A +P +GE IN+K++  + +
Sbjct: 181 RSVDGG--GESADLPGKGETINVKEDGSVLK 209

[Close]

BLAST of CmoCh16G004690 vs. TAIR 10
Match: AT4G18430.1 (RAB GTPase homolog A1E )

HSP 1 Score: 312.8 bits (800), Expect = 2.5e-85
Identity = 150/213 (70.42%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSK 60
           M  YRADDDYDYLFK+VLIGDSGVGKSNLLSRFT+NEF++ESKSTIGVEFATR+++VD K
Sbjct: 1   MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEK 60

Query: 61  VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIV 120
           +IKAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+TRH TFENV+RWLKEL++HTD+N+V
Sbjct: 61  IIKAQLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVV 120

Query: 121 VMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSK 180
           +MLVGNK+DLRHL AVPTE+ +S++E+E+++F+ETSAL+A NVE+AF  VLTQIY ++S+
Sbjct: 121 IMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSR 180

Query: 181 KAVEGGENGSAASVPAQGEKINIKDESGLTRIK 214
           KA++G   G   S+P +G+ I+I ++  +T +K
Sbjct: 181 KALDG--TGDPMSLP-KGQTIDIGNKDDVTAVK 210

The following BLAST results are available for this feature:

BLAST of CmoCh16G004690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40194	6.7e-96	81.04	Ras-related protein Rab11D OS=Lotus japonicus OX=34305 GN=RAB11D PE=2 SV=1	[more]
Q39222	7.4e-95	87.38	Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1	[more]
Q9FK68	1.8e-93	83.49	Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1	[more]
Q01111	2.4e-93	80.00	Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1	[more]
Q9SN35	9.1e-93	83.74	Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1	[more]

BLAST of CmoCh16G004690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUD9	8.2e-113	100.00	ras-related protein Rab11D-like OS=Cucurbita moschata OX=3662 GN=LOC111437652 PE...	[more]
A0A6J1CPC3	1.5e-111	98.59	ras-related protein Rab11D-like OS=Momordica charantia OX=3673 GN=LOC111012877 P...	[more]
A0A6J1IX83	4.5e-111	98.12	ras-related protein RABA1b-like OS=Cucurbita maxima OX=3661 GN=LOC111481478 PE=4...	[more]
A0A6J1J1X3	4.5e-111	98.59	ras-related protein RABA1b-like OS=Cucurbita maxima OX=3661 GN=LOC111482671 PE=4...	[more]
A0A0A0KXK6	1.0e-110	97.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G082460 PE=4 SV=1	[more]

BLAST of CmoCh16G004690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16920.1	5.3e-96	87.38	RAB GTPase homolog A1B	[more]
AT5G45750.1	1.3e-94	83.49	RAB GTPase homolog A1C	[more]
AT4G18800.1	6.5e-94	83.74	RAB GTPase homolog A1D	[more]
AT1G06400.1	9.6e-90	75.83	Ras-related small GTP-binding family protein	[more]
AT4G18430.1	2.5e-85	70.42	RAB GTPase homolog A1E	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 14..35 score: 55.22 coord: 152..174 score: 41.61 coord: 37..53 score: 36.7 coord: 55..77 score: 52.53 coord: 117..130 score: 53.64
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..212 e-value: 1.1E-6 score: 38.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..177 e-value: 1.6E-107 score: 373.2
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..177 e-value: 8.1E-26 score: 101.8
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 1..213
None	No IPR available	PANTHER	PTHR24073:SF1156	RAS-RELATED PROTEIN RABA1B	coord: 1..213
None	No IPR available	PROSITE	PS51419	RAB	coord: 9..226 score: 35.305183
None	No IPR available	PROSITE	PS51420	RHO	coord: 7..175 score: 9.664
None	No IPR available	CDD	cd01868	Rab11_like	coord: 11..175 e-value: 2.33298E-125 score: 350.322
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..173 e-value: 4.0E-12 score: 35.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..175 e-value: 3.2E-61 score: 205.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 2..232 score: 16.275822
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 12..170 e-value: 5.4E-39 score: 131.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 6..207 e-value: 1.1E-70 score: 239.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 9..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004690.1	CmoCh16G004690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0060627	regulation of vesicle-mediated transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding