![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh16G004040 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTTGCCGTTGTTCGTGCTCTGTTTCCTCGCCTCAGATTTTGTTCGAACTGCCCATTCAATCTGGTTGAGCTTGCCTCCATCTGTGACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTGGTTCTTGCTGATTATGTCGTCGTCGCCGATCAAACTAATGCCCCCACCATTTCTGCCAAGGTCTCTTTGATTCTTCGCCAATCTCTTTGATTACTGCCTTGAGATTTTCTATTTCGATTCGTACGATTGGTTCTTGCCGTGCTATTTGTTTGTTGATTTGTCTTCTCCCGTTTGGTTTTGAACGATCCATTTCGAAATGCCTAGAGATTTGATCTATTTCTTCTGAGCTTTTCATCCGATTGTAGTTTGTTTTATTTCCAATTTTGGCTGTGAAGATTATTTCATAACATTCAATAGGAAGTGAAATACCTTGGGAATCTGCTGCTGATGCACATATCATGCAAATTGCTTAATAATTCTTCGTTAGAGGCTGCATATATATATATATATATATATTGACCAATTTTTTGGTGGATATCGATGAGGGGTTGTTTTTTAATCTGCATATCCCTGTTGGACATCTTGAAGAGGTCATTGATCTTAGGAAATAAGCGTCTCTACTGATATGATCTGTGCTATTTCTTGGTTTTAACTTGTTTCTCTTTGACCTCTCAATCTAAAACTTGGTTTCGACATTTGTCGTTGGTTAATAATTCAAAGGTTCGAGTCCTTCCACCTTCACTCTCGTTGTATCTCGTCATCTAAAATCGAACACAATTGCATAATATGATATACGTATATTGATTATTTTGTTTGACTTGTATATTGATTTCGAGGGTTTGTTTGTTCTATCTCATAAACGTTCATGTTGTTAAAGCGTGCATAGTTCAACGGTTTTTTTGGTGGTATTGACAGTGACAGATATTTACTCACAATTCAATTCAAGTCTCTAGATAATATGTTTTGACCAGTTTTTTGGTCGATATCGTCGAGGCGTTGTTTTTTAATCTCCATATCCCTGTTGAACATCTGAAGAGGTCATTGATCTTAGGAAATACGCGTCTCTACTAATATGATCTGTGCTATTTCTTGGTTTTAACTTGTTTTTCTTTGATCCCTCAATCTAAAACTTGATCAACTCCTATGGAAGCTTAGACTCTTTACAGCATTTGAACTGTATTATTGATAGAGTCACTGTTCATGACCTGTCTATTGGTTGTGCCTGCTTTTAAGAAATTGATATCTATCATTTGGTGGTGAAATGTTCGTTTATTCAATGATGTCAAACATGTTAGATAGTATGATACTCATTACGATTCCGTAACTTTTAAGACTTGATTAGTGAGCACGTACAATTCTAGTGCGAAACGATGCTTTTTGCTTAATGTGTGGGGAAAGTTTTTGTTTTCGAGTTTGTAAAGTATGATCCTCATTATGATTCCATAACTTTTAAGACTTGATTGGCAAACATATACAATTCTAGTGCGAAGGGATGCTTTTTGCTTAATGTGTGGGGAAAGATCTTATTTCGAGTTTGTAAAGTATGATCCTCATTATGATTCTATAACTTTTAAGACTTGATTAGCGAGCTCGTACAATTCTAGTGCGAAACAATACTTTTTGCTTAATGTGTGGGGAAAGATTCTGTTTTCGAGTTTGTAAAGTATGATCTTCATTATGATTCCATAATTTTTAAGACTTGATTAGCGAGCACGTACATGCGAAACGATGCTTTTTGCTTAATGTGTGGGGAATGATTCTGTTTTCGAGTTTGTAAAGTATGATCCTCATTATGATTCCATCATTTTTAAGACTTGATTAGCAAGCACGTACAATTCTAGTGCGGAGCGATGCTTTTTGCTTAATGTGTGGGGAATGATTCTGTTTTCGAGTTTGTAAAGTATGATCCTCGTTATGATTCCATAATTTTTAAGACTTGATTAGCGAGCACGTACAATTCTAGTGCGAAGCAATGCTTTTTGCTTAATGTGTGGGGAATGATTCTGTTTACGAGTTTGTAAAGTATGATCCTCATTATGATTCCATAACTTTCGAGTTTGCTTAATGTGTGGGGAAAGTATGATCCTCTAATGTCTTGATTGTGAGTTGTTGTTGTTCTGCACTTTACTGATCGATGGCGAGCTCGTTCAGGTGGCATCGCCATATGGGAACGTTCTTCATCACGCGGAGAACATAACACATAGTCAGTTTGCATTTACAACCACTGAAGCTGGTAATTACCTAGTCTGTTTCTGGTTGACTGACCAAAAACTTGAACCTGGTTTTGAGATAAGTGTGAACCTTGACTGGAGAACTGGGATTGCTGCCAAGGATTGGGAATCAGTTGCAAAAAAAGAGAAGATTGAGGCACCTAATTCCCTCTTCACCTTTTCATATTTCTCTGCTACTTGTAACGTCCATTCTAATGCCTCAACCTTGTTCTCGTTTAGGGCGTTGAACTCGAGCTACGGAAACTCGAGGGAGCGGTCGAAGCTATCCATGAAAATCTACTTTATCTCAGGGACAGGTAACTAACTATAACAAGCTTTCCTGAATGCTTAGCGAAATCTAGCTGCCACTCGTGACCCGTTTCGACTCTCGTTTATATAATTTTGAATCCTTACAGAGAAGCAGATATGAGGACGGTGAGCGAGAGAACGAACGCACGAGTTGCGTTGTATAGTATCATGTCGTTGGGTGTCTGCATTATTGCTTCTACTCTACAGATATGGTTCTTGAAGCGATTCTTTCAGAAGAGAAAGCTTATTTAG ATGGTGTTGCCGTTGTTCGTGCTCTGTTTCCTCGCCTCAGATTTTGTTCGAACTGCCCATTCAATCTGGTTGAGCTTGCCTCCATCTGTGACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTGGTTCTTGCTGATTATGTCGTCGTCGCCGATCAAACTAATGCCCCCACCATTTCTGCCAAGGTGGCATCGCCATATGGGAACGTTCTTCATCACGCGGAGAACATAACACATAGTCAGTTTGCATTTACAACCACTGAAGCTGGTAATTACCTAGTCTGTTTCTGGTTGACTGACCAAAAACTTGAACCTGGTTTTGAGATAAGTGTGAACCTTGACTGGAGAACTGGGATTGCTGCCAAGGATTGGGAATCAGTTGCAAAAAAAGAGAAGATTGAGGCACCTAATTCCCTCTTCACCTTTTCATATTTCTCTGCTACTTGTAACGTCCATTCTAATGCCTCAACCTTGTTCTCGTTTAGGGCGTTGAACTCGAGCTACGGAAACTCGAGGGAGCGGTCGAAGCTATCCATGAAAATCTACTTTATCTCAGGGACAGATATGAGGACGGTGAGCGAGAGAACGAACGCACGAGTTGCGTTGTATAGTATCATGTCGTTGGGTGTCTGCATTATTGCTTCTACTCTACAGATATGGTTCTTGAAGCGATTCTTTCAGAAGAGAAAGCTTATTTAG ATGGTGTTGCCGTTGTTCGTGCTCTGTTTCCTCGCCTCAGATTTTGTTCGAACTGCCCATTCAATCTGGTTGAGCTTGCCTCCATCTGTGACCAAGTGCGTCTCCGAGGAAATCCAGAACAACGTCGTGGTTCTTGCTGATTATGTCGTCGTCGCCGATCAAACTAATGCCCCCACCATTTCTGCCAAGGTGGCATCGCCATATGGGAACGTTCTTCATCACGCGGAGAACATAACACATAGTCAGTTTGCATTTACAACCACTGAAGCTGGTAATTACCTAGTCTGTTTCTGGTTGACTGACCAAAAACTTGAACCTGGTTTTGAGATAAGTGTGAACCTTGACTGGAGAACTGGGATTGCTGCCAAGGATTGGGAATCAGTTGCAAAAAAAGAGAAGATTGAGGCACCTAATTCCCTCTTCACCTTTTCATATTTCTCTGCTACTTGTAACGTCCATTCTAATGCCTCAACCTTGTTCTCGTTTAGGGCGTTGAACTCGAGCTACGGAAACTCGAGGGAGCGGTCGAAGCTATCCATGAAAATCTACTTTATCTCAGGGACAGATATGAGGACGGTGAGCGAGAGAACGAACGCACGAGTTGCGTTGTATAGTATCATGTCGTTGGGTGTCTGCATTATTGCTTCTACTCTACAGATATGGTTCTTGAAGCGATTCTTTCAGAAGAGAAAGCTTATTTAG MVLPLFVLCFLASDFVRTAHSIWLSLPPSVTKCVSEEIQNNVVVLADYVVVADQTNAPTISAKVASPYGNVLHHAENITHSQFAFTTTEAGNYLVCFWLTDQKLEPGFEISVNLDWRTGIAAKDWESVAKKEKIEAPNSLFTFSYFSATCNVHSNASTLFSFRALNSSYGNSRERSKLSMKIYFISGTDMRTVSERTNARVALYSIMSLGVCIIASTLQIWFLKRFFQKRKLI Homology
BLAST of CmoCh16G004040 vs. ExPASy Swiss-Prot
Match: Q6IDL4 (Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana OX=3702 GN=At1g09580 PE=1 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 4.0e-53 Identity = 117/229 (51.09%), Postives = 147/229 (64.19%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy Swiss-Prot
Match: Q9FVU0 (Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana OX=3702 GN=CYB PE=1 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.1e-46 Identity = 107/234 (45.73%), Postives = 146/234 (62.39%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy Swiss-Prot
Match: Q8RWM6 (Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana OX=3702 GN=At1g21900 PE=1 SV=1) HSP 1 Score: 186.0 bits (471), Expect = 4.7e-46 Identity = 113/232 (48.71%), Postives = 140/232 (60.34%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy Swiss-Prot
Match: F4J4Y0 (Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana OX=3702 GN=At3g10780 PE=1 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 6.6e-32 Identity = 87/217 (40.09%), Postives = 118/217 (54.38%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy Swiss-Prot
Match: Q9LQY3 (Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana OX=3702 GN=At1g26690 PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 4.2e-26 Identity = 78/232 (33.62%), Postives = 121/232 (52.16%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy TrEMBL
Match: A0A6J1E3N8 (transmembrane emp24 domain-containing protein p24delta3-like OS=Cucurbita moschata OX=3662 GN=LOC111430507 PE=3 SV=1) HSP 1 Score: 340.5 bits (872), Expect = 5.5e-90 Identity = 187/233 (80.26%), Postives = 189/233 (81.12%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy TrEMBL
Match: A0A6J1JBC3 (transmembrane emp24 domain-containing protein p24delta3-like OS=Cucurbita maxima OX=3661 GN=LOC111482913 PE=3 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 3.6e-89 Identity = 185/233 (79.40%), Postives = 189/233 (81.12%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy TrEMBL
Match: A0A0A0L744 (GOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G214030 PE=3 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 1.1e-74 Identity = 158/233 (67.81%), Postives = 173/233 (74.25%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy TrEMBL
Match: A0A6J1FVP8 (transmembrane emp24 domain-containing protein p24delta3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447721 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 5.6e-74 Identity = 159/233 (68.24%), Postives = 171/233 (73.39%), Query Frame = 0
BLAST of CmoCh16G004040 vs. ExPASy TrEMBL
Match: A0A6J1J056 (transmembrane emp24 domain-containing protein p24delta3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481506 PE=3 SV=1) HSP 1 Score: 285.0 bits (728), Expect = 2.8e-73 Identity = 157/233 (67.38%), Postives = 171/233 (73.39%), Query Frame = 0
BLAST of CmoCh16G004040 vs. NCBI nr
Match: XP_022922539.1 (transmembrane emp24 domain-containing protein p24delta3-like [Cucurbita moschata]) HSP 1 Score: 340.5 bits (872), Expect = 1.1e-89 Identity = 187/233 (80.26%), Postives = 189/233 (81.12%), Query Frame = 0
BLAST of CmoCh16G004040 vs. NCBI nr
Match: XP_022984714.1 (transmembrane emp24 domain-containing protein p24delta3-like [Cucurbita maxima]) HSP 1 Score: 337.8 bits (865), Expect = 7.4e-89 Identity = 185/233 (79.40%), Postives = 189/233 (81.12%), Query Frame = 0
BLAST of CmoCh16G004040 vs. NCBI nr
Match: XP_023552019.1 (transmembrane emp24 domain-containing protein p24delta3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 335.1 bits (858), Expect = 4.8e-88 Identity = 183/233 (78.54%), Postives = 188/233 (80.69%), Query Frame = 0
BLAST of CmoCh16G004040 vs. NCBI nr
Match: KAG6576973.1 (Transmembrane emp24 domain-containing protein p24delta3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 312.0 bits (798), Expect = 4.3e-81 Identity = 173/220 (78.64%), Postives = 175/220 (79.55%), Query Frame = 0
BLAST of CmoCh16G004040 vs. NCBI nr
Match: XP_038878124.1 (transmembrane emp24 domain-containing protein p24delta3-like isoform X1 [Benincasa hispida]) HSP 1 Score: 291.2 bits (744), Expect = 7.9e-75 Identity = 159/233 (68.24%), Postives = 172/233 (73.82%), Query Frame = 0
BLAST of CmoCh16G004040 vs. TAIR 10
Match: AT1G09580.1 (emp24/gp25L/p24 family/GOLD family protein ) HSP 1 Score: 209.5 bits (532), Expect = 2.8e-54 Identity = 117/229 (51.09%), Postives = 147/229 (64.19%), Query Frame = 0
BLAST of CmoCh16G004040 vs. TAIR 10
Match: AT1G57620.1 (emp24/gp25L/p24 family/GOLD family protein ) HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47 Identity = 107/234 (45.73%), Postives = 146/234 (62.39%), Query Frame = 0
BLAST of CmoCh16G004040 vs. TAIR 10
Match: AT1G21900.1 (emp24/gp25L/p24 family/GOLD family protein ) HSP 1 Score: 186.0 bits (471), Expect = 3.4e-47 Identity = 113/232 (48.71%), Postives = 140/232 (60.34%), Query Frame = 0
BLAST of CmoCh16G004040 vs. TAIR 10
Match: AT3G10780.1 (emp24/gp25L/p24 family/GOLD family protein ) HSP 1 Score: 139.0 bits (349), Expect = 4.7e-33 Identity = 87/217 (40.09%), Postives = 118/217 (54.38%), Query Frame = 0
BLAST of CmoCh16G004040 vs. TAIR 10
Match: AT1G26690.1 (emp24/gp25L/p24 family/GOLD family protein ) HSP 1 Score: 119.8 bits (299), Expect = 3.0e-27 Identity = 78/232 (33.62%), Postives = 121/232 (52.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|