CmoCh16G004000 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCAGGGAAGGGGCAGTGCAGTGGGTGTGGGTGCAGCCATGGCTTGCTTGCTGCTGCTCCAATACACTGACATGGTTCGTGCCGCAGTTTTCACTGTTGGCGATGATCATGGCTGGACCTTCAACGTCGAATCCTGGCCTAACCAAAAGCTCTTCCGGGCTGGTGACACACTCGGTAATATTTGAGTTATTGTTATGGTTTACATTATCTTTTTTGGACTTTTTCTTTCGAACTTTCTCTCGGTGTTGTTAGTAGAGGTTTTTCACATACTTTTAAAGAATGTTTCCTCGGTTTCGATGTGTTATCTCACAATCTACTCTCTTCTACTCTCTCCCATCAACGTGGGATCTCACAATTCAACCCCTTCAGAACCCAACGTCCTTGCTGACATGCTGTTGGGTGTCCACCCCATTTAGGGCTTAGAGTCCTCACTGGTACACACAGTGACTGGTTCTGATACCATTTATAAGAACCCAAGCCCACAACTAGCTAATAATGGCCTTTTAGGGTTTTCCCTTTTGGGCTTCCTTTAAATTTTTAAAATGAGGAGAAGTTTCACACCCATATGACCACAGAAGAAATGACTAACTGAGTTAGATCACTAACTAATACTAATAGAATAGAAAAAAACTGTCTTTTCTGTATACTTTCATCGGTTCCGTTGCTACCGCGGGCTTTACGCAATCAAACGGATCATGTAGATATCCCTTCAACACAACATAGGTCAACATATCATATCATAACTTTCATACTCTGAGGAGAGGTTTCGAGCTTCCCCTCTCTTAGTTTTTCCAACACGAAAACACCTTCCTTTTCAGTGGCTCAATCCTAAAACGTGTTTAGGGTTGATACAATTTTTTATTAAGTGACCTCTTATAAATATATTAGAAAGACTCGTGTTAGTTTATGGAGATAGTCCTTACTCTTTAGAAGCAAGTAACATGACTATGTCAGAGTCATAGATACCTTCGAGTCATGAGCATGAGTCGTTAAAATTGTACGTGGTTTGTTGTCGTTCCAGTATTCAACTACAGCCCAGGGTCACACAACGTGGTGGGAGTGAACAGTGTGGGGTACAACCAGTGCATGGCTCCAAGGGGTTCCAAGGTTTTGGAATCAGGGAAGGATCAAATGAAGCTGGTTAAGGGACAGAACTTCTTCATCTGCACAGTCCCAGGCCACTGCCAGGCCGGGATGAGGATAGCCATCAATGCAGCTTAA ATGGCTCAGGGAAGGGGCAGTGCAGTGGGTGTGGGTGCAGCCATGGCTTGCTTGCTGCTGCTCCAATACACTGACATGGTTCGTGCCGCAGTTTTCACTGTTGGCGATGATCATGGCTGGACCTTCAACGTCGAATCCTGGCCTAACCAAAAGCTCTTCCGGGCTGGTGACACACTCGTATTCAACTACAGCCCAGGGTCACACAACGTGGTGGGAGTGAACAGTGTGGGGTACAACCAGTGCATGGCTCCAAGGGGTTCCAAGGTTTTGGAATCAGGGAAGGATCAAATGAAGCTGGTTAAGGGACAGAACTTCTTCATCTGCACAGTCCCAGGCCACTGCCAGGCCGGGATGAGGATAGCCATCAATGCAGCTTAA ATGGCTCAGGGAAGGGGCAGTGCAGTGGGTGTGGGTGCAGCCATGGCTTGCTTGCTGCTGCTCCAATACACTGACATGGTTCGTGCCGCAGTTTTCACTGTTGGCGATGATCATGGCTGGACCTTCAACGTCGAATCCTGGCCTAACCAAAAGCTCTTCCGGGCTGGTGACACACTCGTATTCAACTACAGCCCAGGGTCACACAACGTGGTGGGAGTGAACAGTGTGGGGTACAACCAGTGCATGGCTCCAAGGGGTTCCAAGGTTTTGGAATCAGGGAAGGATCAAATGAAGCTGGTTAAGGGACAGAACTTCTTCATCTGCACAGTCCCAGGCCACTGCCAGGCCGGGATGAGGATAGCCATCAATGCAGCTTAA MAQGRGSAVGVGAAMACLLLLQYTDMVRAAVFTVGDDHGWTFNVESWPNQKLFRAGDTLVFNYSPGSHNVVGVNSVGYNQCMAPRGSKVLESGKDQMKLVKGQNFFICTVPGHCQAGMRIAINAA Homology
BLAST of CmoCh16G004000 vs. ExPASy Swiss-Prot
Match: Q8LG89 (Basic blue protein OS=Arabidopsis thaliana OX=3702 GN=ARPN PE=2 SV=2) HSP 1 Score: 139.8 bits (351), Expect = 2.1e-32 Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy Swiss-Prot
Match: P00303 (Basic blue protein OS=Cucumis sativus OX=3659 PE=1 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 1.0e-31 Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy Swiss-Prot
Match: P60496 (Chemocyanin OS=Lilium longiflorum OX=4690 PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 2.5e-30 Identity = 63/126 (50.00%), Postives = 81/126 (64.29%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16 Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy Swiss-Prot
Match: A0A0M4FTF3 (Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16 Identity = 40/86 (46.51%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy TrEMBL
Match: A0A6J1E8N9 (basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111430873 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 1.3e-66 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy TrEMBL
Match: A0A6J1E590 (basic blue protein-like OS=Cucurbita moschata OX=3662 GN=LOC111430872 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 6.3e-48 Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy TrEMBL
Match: A0A6J1D6I4 (basic blue protein-like OS=Momordica charantia OX=3673 GN=LOC111017723 PE=4 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 2.4e-47 Identity = 93/124 (75.00%), Postives = 106/124 (85.48%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy TrEMBL
Match: A0A6J1J7W1 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111483380 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46 Identity = 91/125 (72.80%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of CmoCh16G004000 vs. ExPASy TrEMBL
Match: A0A6J1J7A3 (basic blue protein-like OS=Cucurbita maxima OX=3661 GN=LOC111482017 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 2.5e-44 Identity = 87/125 (69.60%), Postives = 105/125 (84.00%), Query Frame = 0
BLAST of CmoCh16G004000 vs. NCBI nr
Match: XP_022923108.1 (basic blue protein-like [Cucurbita moschata]) HSP 1 Score: 261.9 bits (668), Expect = 2.8e-66 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of CmoCh16G004000 vs. NCBI nr
Match: XP_022923107.1 (basic blue protein-like [Cucurbita moschata]) HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47 Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of CmoCh16G004000 vs. NCBI nr
Match: KAG6576969.1 (hypothetical protein SDJN03_24543, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 198.7 bits (504), Expect = 2.9e-47 Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 0
BLAST of CmoCh16G004000 vs. NCBI nr
Match: KAG7014990.1 (hypothetical protein SDJN02_22621, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47 Identity = 93/125 (74.40%), Postives = 106/125 (84.80%), Query Frame = 0
BLAST of CmoCh16G004000 vs. NCBI nr
Match: XP_038878143.1 (basic blue protein-like [Benincasa hispida]) HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47 Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 0
BLAST of CmoCh16G004000 vs. TAIR 10
Match: AT2G02850.1 (plantacyanin ) HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33 Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 0
BLAST of CmoCh16G004000 vs. TAIR 10
Match: AT3G60270.1 (Cupredoxin superfamily protein ) HSP 1 Score: 93.6 bits (231), Expect = 1.2e-19 Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 0
BLAST of CmoCh16G004000 vs. TAIR 10
Match: AT5G26330.1 (Cupredoxin superfamily protein ) HSP 1 Score: 85.5 bits (210), Expect = 3.3e-17 Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 0
BLAST of CmoCh16G004000 vs. TAIR 10
Match: AT2G26720.1 (Cupredoxin superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14 Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 0
BLAST of CmoCh16G004000 vs. TAIR 10
Match: AT3G17675.1 (Cupredoxin superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 2.6e-14 Identity = 37/95 (38.95%), Postives = 50/95 (52.63%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|