CmoCh16G003710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 1701561 .. 1703833 (-)
RNA-Seq Expression	CmoCh16G003710
Synteny	CmoCh16G003710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAATGCTTTTATCAAATGAAGTGGCGGTAAAAACCGCCCTTCGGAACCGCCGGCCGACGGCGGCGCCCAGCCGGTCAGGTGGAACCCGATTGTCACGATCAGTTAGGTTGTTGTGGTACTGTAATTTCCTTCTCTTGGAGATTTCGATTAGGCTGGTTGAATTTCTGTTTCTTCTCGTAGAACGACTAGAAATCCATTGCTAGTTCTGTTTAGTGCAATGTACTGTTCGCGAAGCGTTTTTTAGCCGGAAATTTCATGTGATTTGGTTAGTGTTCTGTCTGAAACATAGCTTATTGAAGTTCAATTCAACTCGGTTCCTGCATTTGATTCATCGTGTAAAGAAGTAATGCAGGTTGCGAAGAGATATCTGTGTACTTCTTTAGTTGAAAAAAATCCAATTCGCAACCGTTCAGCTGATGATTTTCAGTATCTTTCTCCTTTCTTCTCGATTGCAGTTACTGTTGACAGTTTAGCTGCTGGTTTGAGCTTGTAAATCTGTTATTTGTGCTTACTTGAGAAGTATATCGCAGCCTGCTTTGTTTTTTCCTTGATCACGAAAAATTTACATGAACTAGCCACAGTTCAATCTGATGCAGTTGTCTTCTCATTCTTCCATAGTCTTAGATGCCATGGCAAATTGTAAGTAGTTCTTGCAAATTGGAACTCAATCCTTTTGAGGATTTTTGTTTACCACAAAGCTGAACGTTGTAACGCTTGGAAATTTTCTGCCATGTTTCTTCTTCCATTGTTTTGTACAACTATCTTCCATGAACTGTGAGTTTCCAATTCGAATTCCTCTAAGGGGACACACTGCATGGTGGATTTTGTACTCCGAGATCTGTTCCATCAATGTTTGTTAAAATTCCAGGAGTGGCTGGGAGGATCAAAGGTAACTGACTCATCTGCTATTTTCCTTTTGAATGTTCATGGAAAGCTATCATTAATTTATTGATGATTGTTTAGTGTAGACCTTCAGTTCACCATTCAAAGTTTGTTTAACTAATTGGAAATGATCATACGTATTATCTTTCATTAACGTAGTCATTTATTCTGTATTAGAATGAAGATCTTGTCGTTTGTTTTCTTTTATTTTTCTTCCATTAGGTTTACTAAAAGATCTAATCAGCATGACATCATTTCATGAACTTATAATGTTAAGGGGAGAGATCGAAAAACATTATAGAGAATTTTAAATAGAACAATCTCCATTCATTAAGAAAAGCTGATAACCATTTCCCTCCACCTTGGGGTTGGAAAGAAAAAGGAAAAAGAGCTAACTAAAACAAAAAGGTGGGGGGAAGGGGGGGTCCTCCACGCCGAATATGAGCGTCGGTAAAAAGTCAGTCTCTTCCTTTTCCATCAAACTTTGAATGATTAAATAGTATGTTTAGTTTATGAACCTTTATTAACCAATTGAGGTATACTCAGTATGGCCGCATAGGTTGTTTATTATCTTGTCTTGTAAAAAGGAAAAAGTATATGTAGCTGAAAAATTCGCATTAGGTTGCATATTGTGATTTATTGCCCTTCATTTGCATGTTGCTTCATCCTAATTTGCAGGTGCTAATGGATGCATATAGCTTAAAACTCTACAATGGTGTAAAGTTGTACAACTACACCATTATTTAACTTAAATCTTTTTCTTACTGATTTACATCATATGAACTCATGGACTTCACTGTGAGTTTCTGTCCTAGATGATTATAGTTGGTGAGTTTGTTTGTATCATTTCTGAGCTGGGGTCTTCTGTTTGTTGATTTGACCACATTGTTTATGTGACTTACCAGTTATCCCATCCTCAGGTTCCTTTAAAATCAGTGATCAATGTTTAATAATTTTACATAGTGCGAGTTTTCCATTGAGACCATGTGGGTGATGTGTTACATTATTTGAGAACTATTCCACGGAAAGAACATAAGGTGAAGCAAAAAGGGGAGGTAGAGGACATAGCTAGTTAAGCTGCAAGTTATTTTATCAATGTAATGGATTCATTAAAGTTCATTCCAGTCTTGTTGACAGAGTTACTAGTTTTTAATACTTCAACACATCTGTAAACTGCAAACTGCTGTTTATTGGAATTGAGTACCCAAGTGGATTGATTTTCCCCACGCACTAATGTTCATCAAAGCTAAGAATGTCGTTTTATAACAACTTTTAGCGCAGGTTAGTAGTAACTTTTGACAGCAAGTTCGAAGATGGTGTGATAGCAGAAATCAAGTTTTTCCCCCCCTCTTTGAAGGCAATGATGAGCAGCTATATGCCAGGATAG

mRNA sequence

ATGCGAATGCTTTTATCAAATGAAGTGGCGGTAAAAACCGCCCTTCGGAACCGCCGGCCGACGGCGGCGCCCAGCCGGTCAGGTGGAACCCGATTGTCACGATCAGTTAGGAGTGGCTGGGAGGATCAAAGGTTAGTAGTAACTTTTGACAGCAAGTTCGAAGATGGTGTGATAGCAGAAATCAAGTTTTTCCCCCCCTCTTTGAAGGCAATGATGAGCAGCTATATGCCAGGATAG

Coding sequence (CDS)

ATGCGAATGCTTTTATCAAATGAAGTGGCGGTAAAAACCGCCCTTCGGAACCGCCGGCCGACGGCGGCGCCCAGCCGGTCAGGTGGAACCCGATTGTCACGATCAGTTAGGAGTGGCTGGGAGGATCAAAGGTTAGTAGTAACTTTTGACAGCAAGTTCGAAGATGGTGTGATAGCAGAAATCAAGTTTTTCCCCCCCTCTTTGAAGGCAATGATGAGCAGCTATATGCCAGGATAG

Protein sequence

MRMLLSNEVAVKTALRNRRPTAAPSRSGGTRLSRSVRSGWEDQRLVVTFDSKFEDGVIAEIKFFPPSLKAMMSSYMPG

Homology

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BLAST of CmoCh16G003710 vs. NCBI nr
Match: KAG6576943.1 (hypothetical protein SDJN03_24517, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 3  MLLSNEVAVKTALRNRRPTAAPSRSGGTRLSRSV 37
          M LSNEVAVKTALRNRRPTAAPSRSGGTRLSRS+
Sbjct: 1  MRLSNEVAVKTALRNRRPTAAPSRSGGTRLSRSL 34

The following BLAST results are available for this feature:

BLAST of CmoCh16G003710 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003710 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576943.1	4.5e-06	94.12	hypothetical protein SDJN03_24517, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh16G003710 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003710.1	CmoCh16G003710.1	mRNA