CmoCh16G003490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G003490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	mediator of RNA polymerase II transcription subunit 28
Location	Cmo_Chr16: 1611887 .. 1613353 (+)
RNA-Seq Expression	CmoCh16G003490
Synteny	CmoCh16G003490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCAGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCGCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGAGTATGCTCTCCTTCATCTGCTGTGTTCATGTGCTTTTTTAGGGTTTATACTCCTAGGGCTGAAAAATAGTACTTGCTGTACGTTTTGTTTAGTTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAAGTCAGTTACTAATCCCTCCCCTTAAACTTTTGTGCATTCCAGATTTAATGTTGCACTAAGCTGGCAGATAATAGCATAATGTGACCTCAAGTTTCTTCATAATTATAATAGCATCTTATAATGGATACCCTTTGCAAGTTCTCTGTTTGATCTGCATAGACAAACAGCTTTATACAGTCAGTAAAGCAACTTTCCTGAGTAAATCCTCATTAAATTTGGTTCATCATGTTCTGTTTCATATGCTGGAGGTCTGCTGCTGTATCTGGAGATTTTGGTGCATTAAAATTATGTGGACGTGTGGTTTTCTATGAATTTGTTTTATTGAAATATGTGAAGTGGAAGTGACATTTAGATCTAGAAGTAGCATGAATGTCTGTAATCTACGACTCACAAATGGCTCGACATAGGACCGGGGGGATGCTCGGCGTTGAACTGATATTGTCTGTGGTTAGGTGTTTGTAAACAGTGAAGAAAATGACACCCTGGTTTGTTTTTGCTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGTAAATAATCAATCAAGCACCTTATTCATACTATTCTTTTTTGTAACATTTGTTTGTTCTACTTATCATCAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

mRNA sequence

GATCGCATCGGCGACTCAGAATCTACGGTTAGTGAAGAATTCTCAGTTACCGCCCAAAGGAAGAACTCCGGAGCTGGACGGCAAATTCACCGCTTCTGCGACCGACCGAGCTCGTCGTCCTTCACATCCTTCTTCTTATCGATTTCTTTGTCGATGAATTGAAATGGAGATTTGATTGTGGTCACAAGATATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAGTAGAATAGGCTTTCGATCCCAATGCTCTATTGCTTAGTTTTTTTTTTTGTAGATCATGTCAATTTCATACATTCACAACTAATCAATGGTGGGGTATTGTTTGCCATAGACGTTTTTATGTAGACACTTAAATGCATTCACCAAATAACATAGACCTACTCCTCCTACTCCTTCACATGATCAAA

Coding sequence (CDS)

ATGGCTGAACGACAACCACTCGACCAGCAGAATCAAATCGATCCACAGTTGCAATCCTCGCAGTCTCCAAGAGAAGATATGGTTTCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCCTGCTTGCCTGCGAGAGAACTACAAGCAATCGACCGTTCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAATTATACTTCATTGGTTTACAACGGGAGGATCAGCCAACCAAAGTGGAAACACTAAGAAAGGAGATTTCTGCCATTGAGGAGGAATTAAAGTTAAAGGATGACATAATCAAGAAGCAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGACAAACACAACAATGAGTTAGAGAAGGTTTAG

Protein sequence

MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Homology

[Close]

BLAST of CmoCh16G003490 vs. ExPASy Swiss-Prot
Match: Q9LFA5 (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-38
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL
Match: A0A6J1JAT8 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=3661 GN=LOC111482804 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.5e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL
Match: A0A6J1E897 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=3662 GN=LOC111430779 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.5e-69
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL
Match: A0A0A0KT19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.3e-65
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL
Match: A0A1S3BZ89 (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL
Match: A0A5A7TRZ8 (Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00780 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >KAG6576925.1 Mediator of RNA polymerase II transcription subunit 28, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014951.1 Mediator of RNA polymerase II transcription subunit 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: XP_038904970.1 (mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904972.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904973.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904974.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida])

HSP 1 Score: 256.9 bits (655), Expect = 1.0e-64
Identity = 132/141 (93.62%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK++IIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPNKVETLRKEISAIEEELKLKNEIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: XP_004152267.1 (mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_014841 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 130/141 (92.20%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQP+DQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K++IIKKQE+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQLDKHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >KAA0044351.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa] >TYK29480.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 130/141 (92.20%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MAERQ LDQQ+ +DPQ QSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELK+K+DIIKKQERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLK+QLDKHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 121 EGWKKDLKDQLDKHNNELEKV 142
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]

BLAST of CmoCh16G003490 vs. TAIR 10
Match: AT3G52860.1 (unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 9.1e-40
Identity = 86/135 (63.70%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 15  PQLQSSQSPR-------EDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 74
           P ++S ++P        ED+++ V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 75  DFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKDDIIKKQERLIEGWKKD 134
           DFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK KD++IKK  RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 135 LKDQLDKHNNELEKV 142
           +K+Q++KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

The following BLAST results are available for this feature:

BLAST of CmoCh16G003490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFA5	1.3e-38	63.70	Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O...	[more]

BLAST of CmoCh16G003490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JAT8	9.5e-69	100.00	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E897	9.5e-69	100.00	mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=...	[more]
A0A0A0KT19	8.3e-65	92.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1	[more]
A0A1S3BZ89	9.2e-64	92.20	mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G...	[more]
A0A5A7TRZ8	9.2e-64	92.20	Mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo var. maku...	[more]

BLAST of CmoCh16G003490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922953.1	2.0e-68	100.00	mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_...	[more]
XP_038904970.1	1.0e-64	93.62	mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_0...	[more]
XP_004152267.1	1.7e-64	92.20	mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN527...	[more]
XP_008454378.1	1.9e-63	92.20	PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]...	[more]
XP_022149222.1	3.2e-63	92.20	mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]	[more]

BLAST of CmoCh16G003490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52860.1	9.1e-40	63.70	unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..141
None	No IPR available	PFAM	PF11594	Med28	coord: 30..125 e-value: 4.4E-19 score: 68.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR39117:SF1	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141
IPR034456	Mediator of RNA polymerase II transcription subunit 28	PANTHER	PTHR39117	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28	coord: 1..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G003490.1	CmoCh16G003490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex