CmoCh16G003450 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G003450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S29
LocationCmo_Chr16: 1599886 .. 1601319 (-)
RNA-Seq ExpressionCmoCh16G003450
SyntenyCmoCh16G003450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGACTTCTTCTTCCCCGCAAAATTTCTGCTTCACATTGTGATTTCCGAAGCGTTTCAATACCTCACAATCATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTAAGCAAATATCTTCTCACTCCTCTGGTTTCCAAGAAAATTGATGGAGGAAGGACCTGGAACAGTAGTTTCGTTTTCTGTTTTTGTCTGGTTTATTTGAACGAGTTGGAAGTTCATCTACTGAGTAAATAATGTTTAAGCTTGTTTCTATTGCTAAAGTTTGTTCTTGCGGGGTTTGTAATGAAACCTGAAGAATATTGTGCGGCTGAGTACGTATATGCATTACTTTTCTTGCTAAAGGATCGATTAGATAATCAGACGCCTAGGCGTTCGGTTAGCTTTTCTCTTTTTTTCTTTTTTCTTTTTAATTTCAACATGACTTTTAGCTGTTGTCCTCAGGATTTTCCCAACTTGGATGAGATTATGAGATGCTTAGATTTTGTGCTGATTTTGGGGTTTCCTGTTGTTACTGCTCTGTAAGAGTCGTTACACTTGCAGACAATTTCTATTTCGAACCTGTATTTACATAGTGACCGTATCATATATCGTTTTAGGTATAGTTTCGGGTGAAAAGTTATAACCGATGTTCTGTGATGGATGGGTTTCTGTTTTGTGGAGTTATTTGAATTTCGAAGTCTATCTTGATGATGAACTGTTCCTCATGGATGCCCGTAGTATGAGTAAAAATTATTCTTGTATATGAAAAGAAGTCTGATCTTTTCTTTTGGAGCTGTGGACTGAAACCTTTAAGGCTATAACCCCAATAAGTGTATAGATCATTTTGGCAATTACCCATAAGTTATCTAGTCTAGCCATTAGTAACTGAACACTGTATTATCCTTAGTGGATGTCGTAGTGGTTGATGTTGTATTATAAATTGGCTTTGGAGAAAGCCGAATTTCAATAATTCCTTTCTTTCAATCCTCATTCAGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGGTTTTTGTGCTCTCTATGATTATTTGATGAGATATACGCATTATCTTCTGCATTCTCTAAACTTAGAACTTTCCCATTTGTGCAGTACCGCTAAGAAGCTAACATCTCTGGAAGAGAGGGTGGGTTGAATTTATTGAAGAAGATTTTTCAATGTTTAGCAATGTTTTCTCTCTTGTTTACTTGGTATCGAATATGAAATGATTGTTAGACGACGATTTTGACACTTGGTTCTGGACTAAATTTAACGCTTCTTAATTGAGCTTCCTCTTGATGTTATTTTGACAATTATTCCTTCTGTTCTTCAGTTTCTAAGTACGTTTGA

mRNA sequence

CCGACTTCTTCTTCCCCGCAAAATTTCTGCTTCACATTGTGATTTCCGAAGCGTTTCAATACCTCACAATCATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA

Coding sequence (CDS)

ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA

Protein sequence

MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV
Homology
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSR----LCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-22
Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK+YG GSR      RVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVC----RVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.0e-16
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGH N+W SHP+ YG GSR+     ++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSC----KICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54

BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGH N+W SHP+ YGPGSR    + RVC N HGLIRKYGL  CR+CFR  A +IGF K
Sbjct: 1  MGHENIWYSHPRKYGPGSR----YCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54

BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q6F473 (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGH+N+W SHP+ YG GSR+     R C N HGLIRKYGL  CRQCFR  A +IGF K
Sbjct: 1  MGHANIWYSHPRKYGQGSRSC----RACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54

BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A6A5N100 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00011894 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK+YGPGSRTWY  +  RVCGNPHGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTASNRVCGNPHGLIRKYGLNCCRQCFRSNAKEIGFIK 60

BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A1L6K5A9 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSN+WNSHPKSYGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  
Sbjct: 1  MGHSNIWNSHPKSYGPGSRTC----RVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVR 60

Query: 61 VSKYV 66
            KY+
Sbjct: 61 RQKYL 61

BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A103YKL0 (Ribosomal protein S14 (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010768 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 60
          MGHSNVWNSHPK+YGPGSRTW +F   RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKTYGPGSRTWSTFFGSRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIK 60

BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A0A0KV31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSNVWNSHPK+YGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTC----RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A4D6N8J1 (Small subunit ribosomal protein S29e OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3484 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSNVWNSHPK+YGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK S
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTC----RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVS 57

Query: 61 V 62
          V
Sbjct: 61 V 57

BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAF1880834.1 (hypothetical protein Lal_00011894 [Lupinus albus])

HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWY--SFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK+YGPGSRTWY  +  RVCGNPHGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTWYVTASNRVCGNPHGLIRKYGLNCCRQCFRSNAKEIGFIK 60

BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAG7014949.1 (40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSNVWNSHPKSYGPGSRT     RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS
Sbjct: 1  MGHSNVWNSHPKSYGPGSRTC----RVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 56

BLAST of CmoCh16G003450 vs. NCBI nr
Match: APR64012.1 (hypothetical protein [Populus tomentosa])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSN+WNSHPKSYGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  
Sbjct: 1  MGHSNIWNSHPKSYGPGSRTC----RVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVR 60

Query: 61 VSKYV 66
            KY+
Sbjct: 61 RQKYL 61

BLAST of CmoCh16G003450 vs. NCBI nr
Match: KVI10829.1 (Ribosomal protein S14, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSF--GRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 60
          MGHSNVWNSHPK+YGPGSRTW +F   RVCGN HGLIRKYGLMCCRQCF SNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKTYGPGSRTWSTFFGSRVCGNSHGLIRKYGLMCCRQCFHSNAKEIGFIK 60

BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAG6784461.1 (hypothetical protein POTOM_010157 [Populus tomentosa])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKAS 60
          MGHSNVWNSHPK+YGPGSRT     RVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIK  
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTC----RVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKVR 60

Query: 61 VSKYV 66
          V K++
Sbjct: 61 VQKHL 61

BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSR----LCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSR----LCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24
Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1  MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 59
          MGHSNVWNSHPK YGPGSR      RVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSR----LCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q680P81.3e-2284.4840S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2[more]
Q5I7K36.6e-2281.0340S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1[more]
Q7XYB07.0e-1662.0740S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1[more]
Q4PM472.1e-1563.7940S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1[more]
Q6F4731.0e-1462.0740S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6A5N1003.3e-2488.33Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00011894 PE=3 SV=1[more]
A0A1L6K5A99.5e-2481.54Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1[more]
A0A103YKL09.5e-2485.48Ribosomal protein S14 (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN... [more]
A0A0A0KV311.2e-2390.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=3 SV=1[more]
A0A4D6N8J11.2e-2388.52Small subunit ribosomal protein S29e OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3... [more]
Match NameE-valueIdentityDescription
KAF1880834.16.8e-2488.33hypothetical protein Lal_00011894 [Lupinus albus][more]
KAG7014949.11.2e-2391.6740S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
APR64012.12.0e-2381.54hypothetical protein [Populus tomentosa][more]
KVI10829.12.0e-2385.48Ribosomal protein S14, partial [Cynara cardunculus var. scolymus][more]
KAG6784461.12.0e-2381.54hypothetical protein POTOM_010157 [Populus tomentosa][more]
Match NameE-valueIdentityDescription
AT3G43980.19.4e-2484.48Ribosomal protein S14p/S29e family protein [more]
AT3G44010.19.4e-2484.48Ribosomal protein S14p/S29e family protein [more]
AT4G33865.19.4e-2484.48Ribosomal protein S14p/S29e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043140Ribosomal protein S14/S29GENE3D4.10.830.1030s Ribosomal Protein S14; Chain Ncoord: 1..59
e-value: 3.0E-31
score: 109.0
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 7..60
e-value: 1.0E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR12010:SF1440S RIBOSOMAL PROTEIN S29coord: 1..58
IPR03974440S ribosomal protein S29/30S ribosomal protein S14 type ZPANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003450.1CmoCh16G003450.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008270 zinc ion binding