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CmoCh16G003450 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCGACTTCTTCTTCCCCGCAAAATTTCTGCTTCACATTGTGATTTCCGAAGCGTTTCAATACCTCACAATCATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTAAGCAAATATCTTCTCACTCCTCTGGTTTCCAAGAAAATTGATGGAGGAAGGACCTGGAACAGTAGTTTCGTTTTCTGTTTTTGTCTGGTTTATTTGAACGAGTTGGAAGTTCATCTACTGAGTAAATAATGTTTAAGCTTGTTTCTATTGCTAAAGTTTGTTCTTGCGGGGTTTGTAATGAAACCTGAAGAATATTGTGCGGCTGAGTACGTATATGCATTACTTTTCTTGCTAAAGGATCGATTAGATAATCAGACGCCTAGGCGTTCGGTTAGCTTTTCTCTTTTTTTCTTTTTTCTTTTTAATTTCAACATGACTTTTAGCTGTTGTCCTCAGGATTTTCCCAACTTGGATGAGATTATGAGATGCTTAGATTTTGTGCTGATTTTGGGGTTTCCTGTTGTTACTGCTCTGTAAGAGTCGTTACACTTGCAGACAATTTCTATTTCGAACCTGTATTTACATAGTGACCGTATCATATATCGTTTTAGGTATAGTTTCGGGTGAAAAGTTATAACCGATGTTCTGTGATGGATGGGTTTCTGTTTTGTGGAGTTATTTGAATTTCGAAGTCTATCTTGATGATGAACTGTTCCTCATGGATGCCCGTAGTATGAGTAAAAATTATTCTTGTATATGAAAAGAAGTCTGATCTTTTCTTTTGGAGCTGTGGACTGAAACCTTTAAGGCTATAACCCCAATAAGTGTATAGATCATTTTGGCAATTACCCATAAGTTATCTAGTCTAGCCATTAGTAACTGAACACTGTATTATCCTTAGTGGATGTCGTAGTGGTTGATGTTGTATTATAAATTGGCTTTGGAGAAAGCCGAATTTCAATAATTCCTTTCTTTCAATCCTCATTCAGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGGTTTTTGTGCTCTCTATGATTATTTGATGAGATATACGCATTATCTTCTGCATTCTCTAAACTTAGAACTTTCCCATTTGTGCAGTACCGCTAAGAAGCTAACATCTCTGGAAGAGAGGGTGGGTTGAATTTATTGAAGAAGATTTTTCAATGTTTAGCAATGTTTTCTCTCTTGTTTACTTGGTATCGAATATGAAATGATTGTTAGACGACGATTTTGACACTTGGTTCTGGACTAAATTTAACGCTTCTTAATTGAGCTTCCTCTTGATGTTATTTTGACAATTATTCCTTCTGTTCTTCAGTTTCTAAGTACGTTTGA CCGACTTCTTCTTCCCCGCAAAATTTCTGCTTCACATTGTGATTTCCGAAGCGTTTCAATACCTCACAATCATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA ATGGGGCACTCCAACGTGTGGAACTCTCATCCGAAGAGCTATGGCCCTGGTTCTCGCACCTGGTATAGTTTCGGTCGTGTGTGCGGAAATCCCCATGGGTTGATCAGAAAGTATGGACTTATGTGCTGCAGACAATGCTTCCGTAGCAATGCCAAGGAAATTGGGTTCATTAAGGCAAGTGTTTCTAAGTACGTTTGA MGHSNVWNSHPKSYGPGSRTWYSFGRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKASVSKYV Homology
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2) HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22 Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 6.6e-22 Identity = 47/58 (81.03%), Postives = 50/58 (86.21%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 7.0e-16 Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15 Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy Swiss-Prot
Match: Q6F473 (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14 Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A6A5N100 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00011894 PE=3 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A1L6K5A9 (Uncharacterized protein OS=Populus tomentosa OX=118781 PE=2 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24 Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A103YKL0 (Ribosomal protein S14 (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010768 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 9.5e-24 Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A0A0KV31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000930 PE=3 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23 Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CmoCh16G003450 vs. ExPASy TrEMBL
Match: A0A4D6N8J1 (Small subunit ribosomal protein S29e OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3484 PE=3 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23 Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 0
BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAF1880834.1 (hypothetical protein Lal_00011894 [Lupinus albus]) HSP 1 Score: 120.2 bits (300), Expect = 6.8e-24 Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAG7014949.1 (40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23 Identity = 55/60 (91.67%), Postives = 55/60 (91.67%), Query Frame = 0
BLAST of CmoCh16G003450 vs. NCBI nr
Match: APR64012.1 (hypothetical protein [Populus tomentosa]) HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23 Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0
BLAST of CmoCh16G003450 vs. NCBI nr
Match: KVI10829.1 (Ribosomal protein S14, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23 Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0
BLAST of CmoCh16G003450 vs. NCBI nr
Match: KAG6784461.1 (hypothetical protein POTOM_010157 [Populus tomentosa]) HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 0
BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein ) HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24 Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein ) HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24 Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CmoCh16G003450 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein ) HSP 1 Score: 106.3 bits (264), Expect = 9.4e-24 Identity = 49/58 (84.48%), Postives = 49/58 (84.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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