CmoCh16G003410 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G003410
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 1576182 .. 1577692 (+)
RNA-Seq ExpressionCmoCh16G003410
SyntenyCmoCh16G003410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCGTTTGATGAGCAAAAACAAAAGGAAGAAGGAAAAGATTGTCATTAAGCACTGTTGCGTTGTTGTTTGTTCTTTTCCTTTTTTTTCTATGTTCTAATAAAAAAAACTTCCCTTTTCATCACTTTTTGTCTTGCAAAATTAATCTCTCTCTATTTTTTTGGTGTTCATGTGATTACACGAGATTCTACGCCCGTTAGAGAAGAGAACGAAGTATTTTTTTATAAGGGTGTGGAAACATCTCACTAGTGTACGCGTTTTGTAATTGTGGAGCTCACTACAAGCTAAAATAGATAATAACAGCTAGCTACAAATTTAATGACCCATCTCACTAGTATACGCGTTTTGTAATTGTGGAGCTGACTACAACCTAAAACAGACAATAACAGCTAGCTACAGATTCAATGACCCATCTCACTAGTATACGCGTTTTGTAATTGTGGAGCTGAATACAAGCTAAAACAGATAATAACAGCTAGCTACAAATTCAATGACTCGAATAATTTGAATCACCTAATCCAAACAATAAGTGTTGTGTTGGGTTGGGTTTTTTTTGGTTTGGATTGGGATGAATTTTTTGAAAATCGAAAAATTTGGTATGGTTTGGTTCACGGGTTGGAACGTATTTGATCGAGTCAACCTGACCCACTAGAAAATAGGATTTACAATCCAACTCAACCCTACAGTACTTTTTAAATTGTTATGAATATTAAGAGGATTTTAGTTATTAATGTAACATGTATTATGAATAATATGGTTTTTTTAAAATAATTAAAAAAATGAACAATTGGACGATACAACCCGACTAAAAAATAAAGGGTTGAGTTAGGTTAGGTTATAAACCCTACTCGAGTCATTCGTGTCACCGACCTACAATTCTACGTGGGTTTGTGACGAATAAGCTAAGTGACCAATAAAGTAACGAAATTGATAAGGGTGAGGACGCGATTAGAGACTTTTTGTTACGTTGAAAGCATGAATATTCATTAATGGCTGCTGCTCTGTGCTATAAATACAAGGCTTGGGAGAGCAAATAAAACCATACAATTGCTGTTGGGAAATAGAGAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

mRNA sequence

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

Coding sequence (CDS)

ATGGAGATGAACAAGAAGGTTGCTTTGCTGGTTATGGTGGTTCTGGCGGCGGTTATGGCTCAATCCGCGGCCGTGGATGAGGCGATTCAGCTGCCGTCGGAGGGCGGAGCAGGTTGTTACGACACACCGCCCCCTCCAAGAGTATGTCCGGTTATGATATTGCCGTGTAAAACTGACTCTGAGTGCTCTCCATGTTACTGTGTTAATGGCTCCTGCAGAGATCATATGGAGATGAAAAACAAGGTTGGTTTGGTGGCTATGGTGGTTGTGATGGTGGTTATGGCTCACTCCGCCACCACCATCGCCGCCGTGGATGAGCCCATTCAGGTCCCAACCAACGGCGGAGGAAGTGAATCCGATACACCCAGGGTGTGCCCGGCTACACTTTTGCCATGCAAAACTGACTCTGAGTGCTCTCCATGCAACTGTGTCAATGGCTCCTGCGTTTGA

Protein sequence

MEMNKKVALLVMVVLAAVMAQSAAVDEAIQLPSEGGAGCYDTPPPPRVCPVMILPCKTDSECSPCYCVNGSCRDHMEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTDSECSPCNCVNGSCV
Homology
BLAST of CmoCh16G003410 vs. ExPASy TrEMBL
Match: A0A0A0KY39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MEMNKKVALLVMVVLAAVMAQS----AAVDEAIQLPSEGGAGCYDTPPPPRVCPVMILPC 60
          MEM  KVAL+ MVV+  VM +S    AA+DE I+LP+ G A  YDTPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSC 73
          KTDSECSPCYC NGSC
Sbjct: 61 KTDSECSPCYCNNGSC 76

BLAST of CmoCh16G003410 vs. ExPASy TrEMBL
Match: A0A5D3E1Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00670 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 7.8e-13
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I+V  +GG    +T RVCPAT+LPCKTD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV--SGG---ENTARVCPATILPCKTD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +GSC+
Sbjct: 61  SECSPCICNLQSGSCI 70

BLAST of CmoCh16G003410 vs. ExPASy TrEMBL
Match: A0A5A7TRY5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00670 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPAT+LPCKTD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATILPCKTD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +GSC+
Sbjct: 61  SECSPCICNLQSGSCI 70

BLAST of CmoCh16G003410 vs. ExPASy TrEMBL
Match: A0A0A0KWE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPATLLPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

BLAST of CmoCh16G003410 vs. NCBI nr
Match: KGN52766.1 (hypothetical protein Csa_015422 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 0

Query: 1  MEMNKKVALLVMVVLAAVMAQS----AAVDEAIQLPSEGGAGCYDTPPPPRVCPVMILPC 60
          MEM  KVAL+ MVV+  VM +S    AA+DE I+LP+ G A  YDTPPPPRVCP+MILPC
Sbjct: 1  MEMKNKVALVAMVVVMVVMTRSATVTAAMDEGIELPTNGEASYYDTPPPPRVCPIMILPC 60

Query: 61 KTDSECSPCYCVNGSC 73
          KTDSECSPCYC NGSC
Sbjct: 61 KTDSECSPCYCNNGSC 76

BLAST of CmoCh16G003410 vs. NCBI nr
Match: TYK29470.1 (hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 51/76 (67.11%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I+V  +GG    +T RVCPAT+LPCKTD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEV--SGG---ENTARVCPATILPCKTD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +GSC+
Sbjct: 61  SECSPCICNLQSGSCI 70

BLAST of CmoCh16G003410 vs. NCBI nr
Match: KAA0044341.1 (hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-12
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPAT+LPCKTD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATILPCKTD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +GSC+
Sbjct: 61  SECSPCICNLQSGSCI 70

BLAST of CmoCh16G003410 vs. NCBI nr
Match: KGN52767.1 (hypothetical protein Csa_015168 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-11
Identity = 50/76 (65.79%), Postives = 57/76 (75.00%), Query Frame = 0

Query: 76  MEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVPTNGGGSESDTPRVCPATLLPCKTD 135
           MEMKNK  LVAMVV MVVMA S TTI A DE I++  +GG    +T RVCPATLLPC+TD
Sbjct: 1   MEMKNKAALVAMVVFMVVMAQSVTTITA-DETIEL--SGG---ENTARVCPATLLPCETD 60

Query: 136 SECSPCNC--VNGSCV 150
           SECSPC C   +G+CV
Sbjct: 61  SECSPCICNVKSGACV 70

BLAST of CmoCh16G003410 vs. NCBI nr
Match: KAG6576915.1 (hypothetical protein SDJN03_24489, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-05
Identity = 58/166 (34.94%), Postives = 84/166 (50.60%), Query Frame = 0

Query: 7   VALLVMVVLAAVMAQSAAVDEAIQLPSEGGAGCYDTPPP----PRVCPVMILPCKTDSEC 66
           V  L++   A   A  AAVDE IQL S+GG    D P       + CP +++PCK DS+C
Sbjct: 2   VGFLLVAAFAESAAVDAAVDEVIQLVSDGG---NDFPRKMMNGAQGCPRILMPCKVDSDC 61

Query: 67  SP-CYC----------VNGSCRDHMEMKNKVGLVAMVVVMVVMAHSATTIAAVDEPIQVP 126
            P C C          + G+ R+ ME K +  L+AMV ++++ A + +      E IQ+ 
Sbjct: 62  FPTCKCRSNRYERVKGIMGNKREKMEWK-RGALIAMVGLLLMAAFAESAAVHGGEVIQLV 121

Query: 127 TNGGGSESDTPRV-------CPATLLPCKTDSECSP-CNC-VNGSC 149
           ++G    +D PR        CP  L+ C+ DS+C P C C  NG C
Sbjct: 122 SDG---VNDFPRKMMNGALGCPRILMECEVDSDCLPGCICRPNGFC 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KY391.1e-1969.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000850 PE=4 SV=1[more]
A0A5D3E1Q57.8e-1367.11Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRY51.7e-1265.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KWE95.0e-1265.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN52766.12.3e-1969.74hypothetical protein Csa_015422 [Cucumis sativus][more]
TYK29470.11.6e-1267.11hypothetical protein E5676_scaffold655G00670 [Cucumis melo var. makuwa][more]
KAA0044341.13.6e-1265.79hypothetical protein E6C27_scaffold46G00670 [Cucumis melo var. makuwa][more]
KGN52767.11.0e-1165.79hypothetical protein Csa_015168 [Cucumis sativus][more]
KAG6576915.13.2e-0534.94hypothetical protein SDJN03_24489, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00286PTI_1coord: 47..73
e-value: 1.6
score: 17.4
coord: 123..149
e-value: 0.35
score: 19.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003410.1CmoCh16G003410.1mRNA