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CmoCh16G003400 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCACGACTATAGAAGCCAATCCGTAGGTTCGAGCCGGAGCTACCATCTCTTGACTAACGACGAGTCATCTCACCGACGAACACGATCGGATTTTCAGACACCGAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCTTATGCTGGCCAGGTTTCAAATAATGGTAACCTTCCTCGCTGAGAAAATGGCTAAGTGGGAAGGATTATTCAGAAAATTAATGATTTGTAAAACGTTATTATTTTTATTTTATTTTTTTGTTTTAATTTGTTTGATTGTATTGGTTTGGTGAAGAACAATGTGTAAATTAAAGTGGTGGGTCTCCATGAAATGATGTAAACAGCCATTTTCTATGCCAGTAAGATGTTTTTTTTTTTAAAGATTAATTAAAAAAAAAAGTCGTCAAAGGTGAGTTCAGCTCAACATGAAATTTAGTGGGCAGCCATCTTCTTTGAATTTGACAATGGTACATTGAACGGTTGGGTTCGACGTACGGTTCTTAACTTACTGGAGTTTCTGAAACGGATCCTATCAAACCCGAATCCTCCTAAATAGACCAAGCATTCCTATTATGTCAATGTCAATTGAACCAATGTTATTAGCTGTGAATTCGAACTTTTTGGTATTTTTCGTTTGTTCGGATGATATGATGGGTCAATCATTTATTTCATTGGTTCCAACGGTGGCAGCTGTGGAATCTGCTATTGGGTGCTGCACCATTTTTCTTACAAAATACCGAGATGAGATGAGATATCATCGAGGAAGCTAAGTTAAAGAAGATAAGGCGAGTGAATAAGGTCTGAAACCTAATAAAAAAAATTGAAAGTCACTATCTATATCAACAATGTGCACATTCCCTTCTTAGTGACTCAATCATAAGAATTTTATAGTTAAGGATGTTTTGATTTGAGCAATTTTATGGTGGGTGACCTCTTCGGAATTTCCTAAGATGCGTGAGTGAGAACAAAACATGCTGGAATAACTTATATTGGTACGTCATAATGACCTTCACTAGGTATGTTACAATAACGAATAATTGGTGGAAGAACTTATATTAGTCTGTTTGGTTGGAAGAACTTATATTGGTCTGTTTCATTTGTGTTGGTATGTCAGAATGACCTTCACCTTCACTATGTATGTTACAATAACGAATAATTGGTTTAACTGGATAACTAAATAAAATAGATAAATCCTTCTCTTCGTCTTAAGTCAAATATTCTCCATTGAAATATCCCCCATATGGATAATACACATTTTAGTTCAACAAGCCTAAATCTAATTGTTTTGTTCCGAAGCAAACCATGGGGCAGTTTGTCCTATCCTAATTCTAATTGTTTTGTTCCAAAGCAAACCATGGAGCGGTTCGTCCTATCCTAATTCTAATTGTTTTGTTCCAAAGCAAACCACGGGCGGTTCGTCCTATTCAGATATTCACGACCAAGAAACACTGGATTCTCTTTTGGATATGCCCTGAAAAGAGAAGGAAGGTTGGAATGCCAATAGGCGTCTATGATTGAATTCGCCCGACCCGACCGTACCCCACCGTAAAGTAGGAAAGTAAAAATTTTAAATTTGAAGACTAAAATATATATTATAGTCTTGTTCAAGAGTGGAAGCCAACCAACCACTTGGAAAAATGCTTCCATGCACACAATACTCATGTGGCAAAACGAGATGACACAAATGGGCATTGCCAGCCAGATGCAATACACATTCTTATCATTCAAGTTTCAACGTCAAATTGGGAGCAAAATCTCCTCTTTCTCTTCCATAAAATGGCACCTAAACCGCCAAGAGGTACTAACAAAAAGACCTGAAATGGGTAGCATGAAGATTGTCGCGGTGGCTCTAATCGCAATTTTGCTGGTAGCAACGTTGTCGTCGGCTGCCTATGCCATCGACGACGACTCGATGGACCTTGTCTTCGACGGTCGAGACATCAATCATAGAGTCCCAAGAAAGATCATGAAATGGGGAGTGCTTAATCATGAAGAAAGGGTATGTCCCAAAATCCTCATGGAATGCAAAAAGGACTCTGATTGCTTAGCTGAGTGTATCTGTCTCGAGCATGGATATTGTGGCTAA ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCACGACTATAGAAGCCAATCCGTAGGTTCGAGCCGGAGCTACCATCTCTTGACTAACGACGAGTCATCTCACCGACGAACACGATCGGATTTTCAGACACCGAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCTTATGCTGGCCAGGTTTCAAATAATGTCTTGTTCAAGAGTGGAAGCCAACCAACCACTTGGAAAAATGCTTCCATGCACACAATACTCATGTGGCAAAACGAGATGACACAAATGGGCATTGCCAGCCAGATGCAATACACATTCTTATCATTCAAGTTTCAACGTCAAATTGGGAGCAAAATCTCCTCTTTCTCTTCCATAAAATGGCACCTAAACCGCCAAGAGGTACTAACAAAAAGACCTGAAATGGGTAGCATGAAGATTGTCGCGGTGGCTCTAATCGCAATTTTGCTGGTAGCAACGTTGTCGTCGGCTGCCTATGCCATCGACGACGACTCGATGGACCTTGTCTTCGACGGTCGAGACATCAATCATAGAGTCCCAAGAAAGATCATGAAATGGGGAGTGCTTAATCATGAAGAAAGGGTATGTCCCAAAATCCTCATGGAATGCAAAAAGGACTCTGATTGCTTAGCTGAGTGTATCTGTCTCGAGCATGGATATTGTGGCTAA ATGGAGGGCTTAATTCCTTATCTATTCCATGCAATGAAGAAGCAAAAGCCACGCCACGACTATAGAAGCCAATCCGTAGGTTCGAGCCGGAGCTACCATCTCTTGACTAACGACGAGTCATCTCACCGACGAACACGATCGGATTTTCAGACACCGAGGTTCGAGTACTTGGACCAACGGTCGGGGCACGAGTTAATGCATTCCCGTAGCGTTAGTAAGGGTGCGTTTGGATCATCTTATGCTGGCCAGGTTTCAAATAATGTCTTGTTCAAGAGTGGAAGCCAACCAACCACTTGGAAAAATGCTTCCATGCACACAATACTCATGTGGCAAAACGAGATGACACAAATGGGCATTGCCAGCCAGATGCAATACACATTCTTATCATTCAAGTTTCAACGTCAAATTGGGAGCAAAATCTCCTCTTTCTCTTCCATAAAATGGCACCTAAACCGCCAAGAGGTACTAACAAAAAGACCTGAAATGGGTAGCATGAAGATTGTCGCGGTGGCTCTAATCGCAATTTTGCTGGTAGCAACGTTGTCGTCGGCTGCCTATGCCATCGACGACGACTCGATGGACCTTGTCTTCGACGGTCGAGACATCAATCATAGAGTCCCAAGAAAGATCATGAAATGGGGAGTGCTTAATCATGAAGAAAGGGTATGTCCCAAAATCCTCATGGAATGCAAAAAGGACTCTGATTGCTTAGCTGAGTGTATCTGTCTCGAGCATGGATATTGTGGCTAA MEGLIPYLFHAMKKQKPRHDYRSQSVGSSRSYHLLTNDESSHRRTRSDFQTPRFEYLDQRSGHELMHSRSVSKGAFGSSYAGQVSNNVLFKSGSQPTTWKNASMHTILMWQNEMTQMGIASQMQYTFLSFKFQRQIGSKISSFSSIKWHLNRQEVLTKRPEMGSMKIVAVALIAILLVATLSSAAYAIDDDSMDLVFDGRDINHRVPRKIMKWGVLNHEERVCPKILMECKKDSDCLAECICLEHGYCG Homology
BLAST of CmoCh16G003400 vs. ExPASy Swiss-Prot
Match: P10293 (Trypsin inhibitor 3 OS=Cucurbita pepo OX=3663 PE=1 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 2.5e-13 Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy Swiss-Prot
Match: P07853 (Trypsin inhibitor 4 OS=Cucurbita maxima OX=3661 PE=1 SV=2) HSP 1 Score: 74.3 bits (181), Expect = 2.1e-12 Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy Swiss-Prot
Match: P01074 (Trypsin inhibitor 1 OS=Cucurbita maxima OX=3661 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 9.0e-11 Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy Swiss-Prot
Match: P83398 (Trypsin inhibitor 7 OS=Cyclanthera pedata OX=198836 PE=1 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 3.8e-09 Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy Swiss-Prot
Match: P83397 (Trypsin inhibitor 6 OS=Cyclanthera pedata OX=198836 PE=1 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 4.9e-09 Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy TrEMBL
Match: A0A6J1E4H0 (probable polygalacturonase At3g15720 OS=Cucurbita moschata OX=3662 GN=LOC111430533 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.9e-35 Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy TrEMBL
Match: A0A0A0KT06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000840 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28 Identity = 75/109 (68.81%), Postives = 80/109 (73.39%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy TrEMBL
Match: A0A5A7TM95 (Putative beta-D-xylosidase 5 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00650 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27 Identity = 76/112 (67.86%), Postives = 81/112 (72.32%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy TrEMBL
Match: A0A5D3E148 (Trypsin inhibitor 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00640 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18 Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0
BLAST of CmoCh16G003400 vs. ExPASy TrEMBL
Match: A0A5N6QPG1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004630 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15 Identity = 54/98 (55.10%), Postives = 69/98 (70.41%), Query Frame = 0
BLAST of CmoCh16G003400 vs. NCBI nr
Match: KAG6576919.1 (hypothetical protein SDJN03_24493, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 278.9 bits (712), Expect = 4.4e-71 Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of CmoCh16G003400 vs. NCBI nr
Match: KAG7014944.1 (hypothetical protein SDJN02_22575, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 276.6 bits (706), Expect = 2.2e-70 Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0
BLAST of CmoCh16G003400 vs. NCBI nr
Match: KAG6576920.1 (hypothetical protein SDJN03_24494, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 174.1 bits (440), Expect = 1.5e-39 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of CmoCh16G003400 vs. NCBI nr
Match: KAG7014945.1 (NADH-ubiquinone oxidoreductase chain 4L, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 174.1 bits (440), Expect = 1.5e-39 Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0
BLAST of CmoCh16G003400 vs. NCBI nr
Match: XP_022922566.1 (probable polygalacturonase At3g15720 [Cucurbita moschata]) HSP 1 Score: 159.5 bits (402), Expect = 3.9e-35 Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0
BLAST of CmoCh16G003400 vs. TAIR 10
Match: AT3G19615.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08 Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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