![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh16G002610 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA ATGGCGATTAGGAGTTTTGTGGTGATGATTTTGGTGGCATTGTTGATCGGCTCTGCAATCGCGCAATCGCCGGCGGCATCTCCGTCATTGTCTCCGAGGAAATCACCGTCCAAGGCTCCGTCGGCGTCTCCGTCAGTGAAGTCGCCAAAATCCTCTCCGGCCGCGCCTACTCCGGCTTCTTCGCCATCTACTTCTCCGTCTCCGGCGGCTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCCGCTCCGTCAGGTAGCGGCGCCGCTTCGATCTCTTTCTCGGTGTTCGGATCTGTGGCCGTTGTTCTATACGCCGTCGTTTTGATGATCTGA MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSPAAPTPASSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVLMI Homology
BLAST of CmoCh16G002610 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 6.0e-07 Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 0
BLAST of CmoCh16G002610 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of CmoCh16G002610 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37 Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of CmoCh16G002610 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 2.3e-25 Identity = 95/123 (77.24%), Postives = 102/123 (82.93%), Query Frame = 0
BLAST of CmoCh16G002610 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22 Identity = 90/123 (73.17%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of CmoCh16G002610 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 5.3e-22 Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 0
BLAST of CmoCh16G002610 vs. NCBI nr
Match: XP_022922765.1 (classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Classical arabinogalactan protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 168.3 bits (425), Expect = 3.7e-38 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0
BLAST of CmoCh16G002610 vs. NCBI nr
Match: XP_023552483.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37 Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of CmoCh16G002610 vs. NCBI nr
Match: XP_022985016.1 (classical arabinogalactan protein 1-like [Cucurbita maxima]) HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37 Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0
BLAST of CmoCh16G002610 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 127.5 bits (319), Expect = 7.3e-26 Identity = 94/123 (76.42%), Postives = 103/123 (83.74%), Query Frame = 0
BLAST of CmoCh16G002610 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida]) HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25 Identity = 100/127 (78.74%), Postives = 104/127 (81.89%), Query Frame = 0
BLAST of CmoCh16G002610 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 ) HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08 Identity = 61/127 (48.03%), Postives = 76/127 (59.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|