CmoCh16G002600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	root phototropism protein 3-like
Location	Cmo_Chr16: 1150427 .. 1151109 (-)
RNA-Seq Expression	CmoCh16G002600
Synteny	CmoCh16G002600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATCTTTAAAAGATAATCTATTTGCTTTGGTAGCACAGGAGAAGCTCTGTTGGTGGTGCTTCCATGGCGGCCCCATTTTGGAGAAGCGAAAGAGAGGGAGAGCATCTGAAAGAAGCATTATTAATGCAAAAACAAAGCAAAGGGGATGGCAATCAGAATGATCCATCATCTACCCATCACCCCATTTACTTCACACCCACTGAAAAATCAGTGAAGAAGCCGACAATTCAACCACATAATTCCAATCATCCCATGTGGGTTTCGCCTATTTCCCCTCTATATCGCTCTATCTTCTTCTTCCCCCTCTCCTCTTATTCTTCCCCCCTTTCTTTTCATCTGTCACTTTCCGATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGTACGGTTTCTTCTTCTTCTTCTTCTGAACCTTTTGTGGCTGCCATTTTCTCTGAATTTGTTTGATTGTGTTCTGTTGTGGCTGTATTCCTCCACCCTCTATGTGTTCTTGCAGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

mRNA sequence

CTATCTTTAAAAGATAATCTATTTGCTTTGGTAGCACAGGAGAAGCTCTGTTGGTGGTGCTTCCATGGCGGCCCCATTTTGGAGAAGCGAAAGAGAGGGAGAGCATCTGAAAGAAGCATTATTAATGCAAAAACAAAGCAAAGGGGATGGCAATCAGAATGATCCATCATCTACCCATCACCCCATTTACTTCACACCCACTGAAAAATCAGTGAAGAAGCCGACAATTCAACCACATAATTCCAATCATCCCATGTGGGTTTCGCCTATTTCCCCTCTATATCGCTCTATCTTCTTCTTCCCCCTCTCCTCTTATTCTTCCCCCCTTTCTTTTCATCTGTCACTTTCCGATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

Coding sequence (CDS)

ATGTGGGAATCCGAGAATCATTCTGTTGGTTTTGGTGCTGGAGATTACGGCAATGGCGTCCCCCCTTCCGCCAAACACGCCCTCAACACTCACGGCTTCGACCTCAGAGGCAACTCATGGCATGTTGCTACTGATATCCCTAGTGACCTTTTAGTAAAAGTTGAGGGTGTGAATTTCCATTTGCACAAGGTGTTGTATAATCAATCTCCTCTGTTTTGA

Protein sequence

MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFHLHKVLYNQSPLF

Homology

[Close]

BLAST of CmoCh16G002600 vs. ExPASy Swiss-Prot
Match: Q9FMF5 (Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-14
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVE 60
          MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+ 
Sbjct: 2  MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 61 GVNFHLHK 64
           +NFHLHK
Sbjct: 62 DMNFHLHK 69

[Close]

BLAST of CmoCh16G002600 vs. ExPASy Swiss-Prot
Match: Q5KS50 (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CPT1 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 34/66 (51.52%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDY---GNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGV 60
          MWESE+ S G   G     G G     + AL   GF  R  SW+V +DIPSDLLVKV  V
Sbjct: 1  MWESESESHGGERGLVPVGGGGGSGRHEAALKNDGFVRRDRSWYVNSDIPSDLLVKVGDV 60

Query: 61 NFHLHK 64
          NF+LHK
Sbjct: 61 NFYLHK 66

[Close]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL
Match: A0A6J1E9P7 (root phototropism protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430661 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL
Match: A0A6J1J3A8 (root phototropism protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483008 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL
Match: A0A5D3CB29 (Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00270 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARDYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL
Match: A0A1S4E3Y8 (root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21
Identity = 51/63 (80.95%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A DY NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARDYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL
Match: A0A0A0KZC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-20
Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESEN S+   A  Y NGVPPSAKHAL T GF+LRGNSW+VATDIPSDLLV+VEGVNFH
Sbjct: 1  MWESENDSIAV-ARHYANGVPPSAKHALKTDGFELRGNSWYVATDIPSDLLVQVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 62

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: KAG6576846.1 (Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: XP_022922760.1 (root phototropism protein 3-like [Cucurbita moschata] >XP_022922761.1 root phototropism protein 3-like [Cucurbita moschata] >XP_022922763.1 root phototropism protein 3-like [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: XP_022984852.1 (root phototropism protein 3-like [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: KAG7014867.1 (Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 4.1e-30
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. NCBI nr
Match: XP_023552480.1 (root phototropism protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.7 bits (343), Expect = 7.7e-29
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MWESENHSVGFGAGDYGNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60
          MWESENHSVGFGAG+Y NGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH
Sbjct: 1  MWESENHSVGFGAGEYDNGVPPSAKHALNTHGFDLRGNSWHVATDIPSDLLVKVEGVNFH 60

Query: 61 LHK 64
          LHK
Sbjct: 61 LHK 63

[Close]

BLAST of CmoCh16G002600 vs. TAIR 10
Match: AT5G64330.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVE 60
          MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+ 
Sbjct: 2  MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 61 GVNFHLHK 64
           +NFHLHK
Sbjct: 62 DMNFHLHK 69

[Close]

BLAST of CmoCh16G002600 vs. TAIR 10
Match: AT5G64330.2 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MWESENH-SVGFGAG---DYGNGVPPSAKH-ALNTHGFDLRGNSWHVATDIPSDLLVKVE 60
          MWESE+   VG G G   +YG+GV  S KH  + T GF+LRG SW VATDIPSDLLVK+ 
Sbjct: 2  MWESESDGGVGVGGGGGREYGDGVLSSNKHGGVKTDGFELRGQSWFVATDIPSDLLVKIG 61

Query: 61 GVNFHLHK 64
           +NFHLHK
Sbjct: 62 DMNFHLHK 69

The following BLAST results are available for this feature:

BLAST of CmoCh16G002600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMF5	1.5e-14	61.76	Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2	[more]
Q5KS50	2.7e-08	51.52	Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CP...	[more]

BLAST of CmoCh16G002600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E9P7	2.0e-30	100.00	root phototropism protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430661 P...	[more]
A0A6J1J3A8	2.0e-30	100.00	root phototropism protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483008 PE=...	[more]
A0A5D3CB29	8.4e-21	80.95	Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S4E3Y8	8.4e-21	80.95	root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1	[more]
A0A0A0KZC3	5.4e-20	79.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1	[more]

BLAST of CmoCh16G002600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576846.1	4.1e-30	100.00	Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922760.1	4.1e-30	100.00	root phototropism protein 3-like [Cucurbita moschata] >XP_022922761.1 root photo...	[more]
XP_022984852.1	4.1e-30	100.00	root phototropism protein 3-like [Cucurbita maxima]	[more]
KAG7014867.1	4.1e-30	100.00	Root phototropism protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023552480.1	7.7e-29	96.83	root phototropism protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh16G002600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64330.1	1.0e-15	61.76	Phototropic-responsive NPH3 family protein	[more]
AT5G64330.2	1.0e-15	61.76	Phototropic-responsive NPH3 family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002600.1	CmoCh16G002600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane