CmoCh16G002530 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G002530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionlate embryogenesis abundant protein At5g17165-like
LocationCmo_Chr16: 1125218 .. 1131421 (-)
RNA-Seq ExpressionCmoCh16G002530
SyntenyCmoCh16G002530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGGAAGCTTTTGAGTTTTGTCGCCTTTTGGCTGATTTTAATACGACGCCGTACTTGGCGCACTATATAAAATGAGTTGCCGCGAACGATTAGAATCCAGAATCATAAGCAATTAATCGCTTGTTCATCCTCATCGTCGCTCTCTCCCTTTTCTCTTAGGCGTCGTTTTTCTGGTTCTTCGTTTTTTCTCTCTCTCTCTTTTTGAGCTTGAATTGTATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGAGGAAACGAATCACTGACCAGATCTGGAACAGAGATCCACTTCGCAACTCTGCGATCTCTTCCGCTGCTCCGAAGTTCAGGTTCTCCTTCTTCTTCTTCGATTTTTTTTTCTTGTGCGAATGTTCATGAAGTTATTGTGCTGTTACTTTGTTTTGTTCTGTTATTCTCTGGTAGATAGCTATATTGCATTCTTGTTGCGAAATTTTCTTTACAAAGTTGTTCCGATTGTTGTTGCATTTCTTCTTCTTCACGCTGATTGCCTTTTGAACGACTTCACACCGACGCACACTTAAGATAAACGTCTTCATGACGTAACTCATAGTCCTCTCTTCTTTCGCTCTGTTTTTTTCTTTTGATCATATACTTATTATCGGTTTCTTCTGATTCTGGTCTTGTCTTCATCACAAAAGGATTTAGGATTCTAATTGACCTTCGAGTTTCCCGCCATATTCAATACTACACCTACCTCGCCTAGAAAATTGGAAATTATGAGTTCCTTGACTTGATGCTTTTTGCCTCTCTTCCTCTTCGTTTTTTTGTTTGATTTTATGGAAGATTTTGCCAATTTTATTTTCATTCGGTGTTTGTTCATTCACGTTGTTTATTAGTCGATATTGCTTGCTGTGTGGAAGGAGACTTGGAATTAGAGAGTGCTAATTCTTATTCCTCTGAATTCTTTGTGAAACTTGGGGAAGGGGCGAACGAGTAAATCCGATTTACGAAAATTACTCCTTATTTTATTTTAGTAAATAACTAATCTATATTTTATTTTAGTAATACCTAATTTATCTTTAATATAATGAGTAACTCATTTATTATAAGAGTTATTAATTAATTTGTTCTACTTCTACCTATGTTTCAATTCTCATTTTATATTCTATTTTTGAAAAATAAAACTATAGAATTATTTTACCTTTTTACGTGTTTTCTTTGAAAACATATTTTATTTCTTAGTATTACCTTCGGAATTTAGTCAAGTTTATGTTTTAAACAATCCATGTGAAATCAAACTGAGCCATTTTACCCTTAGTAATGTTGAAATTACAAAAGGCCTCAGCGCAATAAATTTGTGGTGATAGGATTTTATAGTACTATACCTACAATATATTTAATACATTTTAGCTTTACAATTATTTTAGTTTAATTATAGTGAAAAGCAACATTAGGAAGATTTTAGCGTTTAATTAATAAAAATTAAGTGTGATTTGAAATAATATTTTATCTCAAAGTTAACATAATTTAATTTTTTCAAACCACGAATCTTCATTTTGTTTTGGCAAAATGATTCTTCAAATCTTAAACCTACCTAACACATTTTTTATTCTAACCTTTTCAAAATCATTATTTCTTTATAAGCAATTGTTAGGACTCATGGCAATTTTGCCCTAAAACTCTAATTTTCCAAAATTCCAATCGATCTATTTATTTTACTAGAACTTTGGCCAGTCAAATAATTAGATTGAGTCTGCTTTTCTATAAGTGATTTAAAATTTTTCCACTCTGAAATCATAAGTTTTCATATAATGTTGACCTAATAACTTTATAATTTTGGAAGAAAACAAAAGACTCAATAGAAATATAGATTAGGTGACTTACTAAAAGTATATTCCACATGTCCTTGACTATATCTATTATCTATTATGTACTTTAAAAGAAACATAATATATATCTTTAGAGAGAAGAAAAACTTAATAATATTGTATCAATTATTTAGTCAGTTAACTATAATTTGTTTGTTTTAGTACAGTCGAATAAAAATTGATAATATCAATTAACAAGCTACAAATAAAAAATGTAAAGATAATTAGTACGCATTTAGCGCTTTAAATCATGTAGTGCTAGTTAATAATTTTAATATCAACTAATTATAACTAGGTTAATAGTTTAATAAAAACAGTATTTTAATCAATTAAACTGTCCTGTAAAAAAATTAATGGTAATTAAAATTGAAAACTAAACTTAAAAAAAAAAAAAAAACTTGTTTTTTCGTTTGTTTAAAAATCCTTTTATTCTTTCCAAAAGTTAATTTTAATAAATGCTTCAAAATTTACTGAAATAAAAATGTGTATAGATTTTAAATGTGAATTGAAATTTTATAGGAGTTTATTTGTAAGTGTGTGGCAATATTTGGGTCCTAACTTTTGTTTTAGGACATTATAATACTGTTCTAGAATCCAATTTTAACTCAAAATTCGTATGAAAAGATGAAGTGAAGACTGGGTGTGAATATCTATAGTGCCCCCATTTTGATGCTAAAAAATCTCTAAACAAACTCCCTAACTCTAATAAACCTACAAGTACAAGAGTAATTGCTCGACAATTAAAGCCGAGCGTATGTGATATCTGATGTGACCGATGTTCAGCCACTCGATAACACATTTGGATTAACACCTTTTTTCTAAGCCCTTTTCTATTCCTGTCTGGATTCGGCTCTTTCCCGCAGTGGCTTGAATAATGGATAGGACAGAATTGGGGGCAGTTGAGGGGACAGAGTAGGGTTTGCAACTCATATAGACAACCACTAGGTGGTCTACTCCTGAGTTATTTTCTATATCCATCCCATCCTACGTGTCTTTTCAAAATACATGTCAAATTAACCACAATATTTATTTGCTTATTGATGAATACTACGCAAGGTTTTAAATTGAATATAAATGTGGGTTTCAGTTTTATGATAAACATAGAAAAAGAATCATGGTTACATTAGATATTTCCTTGTCACGTGGAACACTGTGTTCATCAAATTTGTTTCCATTCAATGGACTAGCTGGCTCTCACCTTGTTTGTCCAGTAAGATCCAATTGTTGATCACTTAATGTTTGGATTAGGAAACTATTTGAACCCTCAAATATTCTACACGTACCCCACATTAAGTTATTTTAGTAACCGCTGACATAAGGTCACATGGGATAATAATTTCTCCTATTTTTATCTTTGTTTCAAAATATTTTTTATCCCCTGAAATAAGCATAATTCCCTTTCACACTAGCATTGATTGGTAAATATCCCTTACAGAATCATCATCTCTATACTACCTTTATTGTGTTGGAGTGGGGAAGGGATGGTGTGATGTTTGTCTGGAAGTATTGACACTGATCGTTACCATTCTTGGCTTCTTTTGCAAGTTTATGATATTTATTAACGGCTAAATATGCCCTTTTCAGATATTTTTTTTTAGCATTCTATTTTTAATAATTTTACTCCCAATGTCTTCCAAAGTTTTGATGGTACTCTTATAGTGTCAGTAGTTTTCAATCAAATCTTCATTTAGTAACGTATTTTAAATTTAAGAAAATAGTATGAATATCAGGAGCTAAACAATATGTGGAAAGAAAACCTCCATGTGGAGGGAGATCGTTACTATTCTTGGCTTCTTCTGCAAGTTTCTGATATTTATTAACGGCTAATTATGCCTTTTCTAGATATTTTCTTAGTATACTATTTTTAATAATTTTACTCTTTAATGTTTTCCAAAGTTTTGATTGTATTCTTATAGTGGCAGTAGTTTCAGTCAAATCTTCATTAAATAACGTATATTAAATTAAGAAAATAGTTTAATATCAGGAGTTAAGCAATAAGTGGAAAGAAAAAACCTCCATGTGGAGGGACTGTGTCGTTCTTATCATTTCTGTTAGTTATTATTGCGTGTCAGTCCCATCGCTTTTTCTCAGTCTTATCTCAACTCAAGCGTTCCGTTGAATTCGTCTTATTCTTAAAATTAAGATGAGTTCTTCCCCAGAGGTCTGCAGTCGGTTTGGATCACATTAATTATTTATAAATTTGAATCTTTATTTTCTTTTATCATTTCTTTTTTTGTTTGCTTCGCTTTAATGTTTACAGTTTGGATCACATTAATTATTTATAAATTTGAAACTTTATTTTCTTTTATCAATTTTTTTTTGTTTGCTTCGCTTTAATGTTTACCGTTTGGATCAAATTAATTATTTATAAATTTGAATCTTTATTTTCTTTTATCAAATTTTTTTTTTGTTTGCTTCGCTTTAATGTTTACAGTTTGGATCACATTAATTATTTATAATTTTGAATCCTTATTTTCTTTTATCAAATTTTTTTATGTTTGCTTCGCTTTAATGTTAACAGTTTGGATCACATTAATTATTTATAATTTGAATCCTTATTTTCTTTTATCAAATTTTTTTATGTTTGCTTCGCTTTAATGTTTACACTAAGGAAATTTTGGTACTCTCGAACTCAACAACTTAGAAAAGAAAAACAAAGTTTACTCAATTTTGTATTTTTCCATGTCAATCTTTTGACTTTATTTAAAAACTGTTTTTCTCGTTAACTATTTATCCAATAATGTCCATTTTTGAAACCAAACACGCTATTTACTCTTGTTTGCTAATTGCTCCAAAGTCTCTTTAAACTTCATTAAAACAAATTTTATTCTAAAACTATTTTTACACTTTCCACTAGAAAATTTTCAATACTATTTTTAAATTAAAAAAAAAATAATTCAGTAATATAGTTTCCTTTTAACCTTCTATTTTTAAAATATCTTTTAACTTTTAAAAATGTTCTAAAACTATCCTTTTATGAAAGTGTTTTAAAAATGACCATAATTTTTCTAAAATTTTTTGATATTTTAAATTTTTTTTATAAAACTACTCACACCCTTCAACTCTTTAAAAAAAAAATTCAAAATTACCCGTACTTGAAAGTAAAATTAAATAGTTTGAAGATGATATATAAGATGTTGATATCCATTTCCGTTCATATATTAGCATTAAAAAAAAACTCAACTTTTTTTTAATAAAAGTAAAGAGTTTTTAATGCTATTTTTAAATTTTCGCAAGTAATTTTTGAATGTAGTACTTCATTATTTTTTAACTTTTAAAAAAGTTTAAATATTAATGAAGCTTTTTAAAGTTTAATTATATTTTTGAAATACTATTAAAGCTGAAAAATATTGTTTACGGTTTCTATCCAAAAAAATAATAATAATAATAATTTTTTTAGATCTTTTTATAAGTTTATTATTCAAACTTTTAAAAGTTTAGGGTGTATTTTTATCCTAAATTTTAATCTATTTTGAAAACATACTTCCTTAACTCCCTAATGTTCTATTTTAATTTCGCAAGGCCATTTTATTCATTTCTTATTTGTATTCAGTTATCGTAAATTTAGTCTACTACTCTAGAAAAATTAGCCATATCAAAAAATTTAGGGAAAAATAAAAATCTAATGTACGAAGTAGAGTTCAAATTAAAGTTTTAACCTTAAACTATACCAAAAAACGTAAATATGGTTTTATATTTGGTGGAATGGAGCATTAATAGGATGAGACACAAACCTGAAACAGGAGGGCAGCTCACAGTTCAACGTATGACAAGAACCACGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAATCTGCTGATAAGTATTGGGCTCCTAATCCACAAACCGGCGTTTTCGGGCCGGCCACCATCAACCCTGTGGCAGCGGTGGCCAACCATACTGCAAATGGTGGCAACTACTCTATTGTGGAGGAGGAAAAGGCTTGGTTCCGACCTACCAGTCTTGAGGATTCCGAGAAGCCCCACGGTTTCTAGGAGCCTGGGGCTTCCCGAGCCATTGTGGTACTTTTGCCCATCAGACATTTTAGACAACAAGTAGTTAGTTGTTACTAAATAAAGAAGATGGCTGTTTTAGCGGTAGTAAGCATCTGGAGTTGCTCAAGGCTGAGGCAATCTGGCTCAGGATGCTTTTACGGTGTTGTACCAACTTTATTACGGTGTTGGATGTGGTCTACTTCTCGTTTGACTACGCAAAATAGTGTGGTTTTATAGCTTTATCTCTCCATCCAACAAAAGGTTTACCTCTCTACTCACTACTGTTTTTTTTTTTAAATATTTTTCTAAATATTATCTTACACGACTTTATATTTTTATTTTACAAGCTCC

mRNA sequence

TGAGGAAGCTTTTGAGTTTTGTCGCCTTTTGGCTGATTTTAATACGACGCCGTACTTGGCGCACTATATAAAATGAGTTGCCGCGAACGATTAGAATCCAGAATCATAAGCAATTAATCGCTTGTTCATCCTCATCGTCGCTCTCTCCCTTTTCTCTTAGGCGTCGTTTTTCTGGTTCTTCGTTTTTTCTCTCTCTCTCTTTTTGAGCTTGAATTGTATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGAGGAAACGAATCACTGACCAGATCTGGAACAGAGATCCACTTCGCAACTCTGCGATCTCTTCCGCTGCTCCGAAGTTCAGGAGGGCAGCTCACAGTTCAACGTATGACAAGAACCACGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAATCTGCTGATAAGTATTGGGCTCCTAATCCACAAACCGGCGTTTTCGGGCCGGCCACCATCAACCCTGTGGCAGCGGTGGCCAACCATACTGCAAATGGTGGCAACTACTCTATTGTGGAGGAGGAAAAGGCTTGGTTCCGACCTACCAGTCTTGAGGATTCCGAGAAGCCCCACGGTTTCTAGGAGCCTGGGGCTTCCCGAGCCATTGTGGTACTTTTGCCCATCAGACATTTTAGACAACAAGTAGTTAGTTGTTACTAAATAAAGAAGATGGCTGTTTTAGCGGTAGTAAGCATCTGGAGTTGCTCAAGGCTGAGGCAATCTGGCTCAGGATGCTTTTACGGTGTTGTACCAACTTTATTACGGTGTTGGATGTGGTCTACTTCTCGTTTGACTACGCAAAATAGTGTGGTTTTATAGCTTTATCTCTCCATCCAACAAAAGGTTTACCTCTCTACTCACTACTGTTTTTTTTTTTAAATATTTTTCTAAATATTATCTTACACGACTTTATATTTTTATTTTACAAGCTCC

Coding sequence (CDS)

ATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGAGGAAACGAATCACTGACCAGATCTGGAACAGAGATCCACTTCGCAACTCTGCGATCTCTTCCGCTGCTCCGAAGTTCAGGAGGGCAGCTCACAGTTCAACGTATGACAAGAACCACGACGAGCAAGTCCGACCAAGCATAGTCCCTGATGATGTGATTCAGCCTCAATCTGCTGATAAGTATTGGGCTCCTAATCCACAAACCGGCGTTTTCGGGCCGGCCACCATCAACCCTGTGGCAGCGGTGGCCAACCATACTGCAAATGGTGGCAACTACTCTATTGTGGAGGAGGAAAAGGCTTGGTTCCGACCTACCAGTCTTGAGGATTCCGAGAAGCCCCACGGTTTCTAG

Protein sequence

MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTSLEDSEKPHGF
Homology
[Close]
BLAST of CmoCh16G002530 vs. ExPASy Swiss-Prot
Match: F4KFM8 (Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN=At5g17165 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.1e-19
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 42  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTA 101
           R  H+S YDKN +E+++PS VPD++I+P S DKYW+P+PQTGVFGP++    +  A    
Sbjct: 32  RNDHTSAYDKNVEEELQPSQVPDEMIKPDS-DKYWSPHPQTGVFGPSS---SSTNAKDEF 91

Query: 102 NGGNYSIVEEEKAWFRPTSLEDSEKPH 129
            GG    V EEKAWFRPTSLED +K H
Sbjct: 92  RGGQEDSVMEEKAWFRPTSLEDLDKTH 114

[Close]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match: A0A6J1E3E9 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita moschata OX=3662 GN=LOC111430463 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.3e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 130

[Close]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match: A0A6J1JAZ8 (late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 GN=LOC111482838 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIW RDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWTRDPLRNSAISSAAPKFRRAAHTSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQSADKYWAP+PQTGVFGPATINP+AAVANHTA+GGNYSIVEEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQSADKYWAPHPQTGVFGPATINPMAAVANHTADGGNYSIVEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 130

[Close]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match: A0A1S3BYE5 (uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.4e-50
Identity = 106/131 (80.92%), Postives = 114/131 (87.02%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIW-NRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRP 60
           MAANSRSAGAIAGL KRITDQIW + D LRNS ISS+APKFRRAAH+S YDKN +EQVRP
Sbjct: 1   MAANSRSAGAIAGLGKRITDQIWTSSDSLRNSVISSSAPKFRRAAHTSVYDKNPEEQVRP 60

Query: 61  SIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVA-AVANHTANGGNYSIVEEEKAWFRP 120
           SIVPDDVIQPQ+ADKYWAP+PQTGVFGP + NP A A AN  A+ GNYS  EEEKAWFRP
Sbjct: 61  SIVPDDVIQPQAADKYWAPHPQTGVFGPTSDNPAAVAAANRAADVGNYSAAEEEKAWFRP 120

Query: 121 TSLEDSEKPHG 130
           TSLEDSEKPHG
Sbjct: 121 TSLEDSEKPHG 131

[Close]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match: A0A6J1CHE9 (late embryogenesis abundant protein At5g17165-like OS=Momordica charantia OX=3673 GN=LOC111011456 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.5e-49
Identity = 105/129 (81.40%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGL KRIT+QIW  DPLRNSAISS+APKFRRAAH+S YDKN DEQ RPS
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPD+VIQPQ  DKYWAP+PQTGVFGP T +P AA A   ANGG+Y+ VEEEKAWFRPTS
Sbjct: 61  IVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-AANGGSYA-VEEEKAWFRPTS 120

Query: 121 LEDSEKPHG 130
           LEDSEKPHG
Sbjct: 121 LEDSEKPHG 126

[Close]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match: A0A6J1FNH5 (late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447057 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 7.2e-47
Identity = 98/130 (75.38%), Postives = 108/130 (83.08%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGL KRIT+QIW  D    SAISS+A KFRRAAH+S YDKN DEQVRPS
Sbjct: 1   MAANSRSAGAIAGLGKRITNQIWTSD----SAISSSALKFRRAAHTSAYDKNPDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQ+A+KYWAP+P TGVFGP    P AA  +  A+GGN++  EEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQAAEKYWAPHPHTGVFGPEADQPTAAAGSRAADGGNHAAAEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 126

[Close]
BLAST of CmoCh16G002530 vs. NCBI nr
Match: XP_022922449.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 6.9e-68
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 130

[Close]
BLAST of CmoCh16G002530 vs. NCBI nr
Match: KAG6576842.1 (Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.2 bits (674), Expect = 5.8e-67
Identity = 128/130 (98.46%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHTSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQSADKYWAP+PQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQSADKYWAPHPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 130

[Close]
BLAST of CmoCh16G002530 vs. NCBI nr
Match: XP_022984594.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.4e-65
Identity = 125/130 (96.15%), Postives = 129/130 (99.23%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIW RDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWTRDPLRNSAISSAAPKFRRAAHTSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           IVPDDVIQPQSADKYWAP+PQTGVFGPATINP+AAVANHTA+GGNYSIVEEEKAWFRPTS
Sbjct: 61  IVPDDVIQPQSADKYWAPHPQTGVFGPATINPMAAVANHTADGGNYSIVEEEKAWFRPTS 120

Query: 121 LEDSEKPHGF 131
           LEDSEKPHGF
Sbjct: 121 LEDSEKPHGF 130

[Close]
BLAST of CmoCh16G002530 vs. NCBI nr
Match: XP_023552006.1 (late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.9 bits (655), Expect = 9.3e-65
Identity = 127/133 (95.49%), Postives = 130/133 (97.74%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAH+STYDKNHDEQVRPS
Sbjct: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHTSTYDKNHDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINP---VAAVANHTANGGNYSIVEEEKAWFR 120
           IVPDDVIQPQSADKYWAP+PQTGVFGPATINP   VAAVANHTA+GGNYSIVEEEKAWFR
Sbjct: 61  IVPDDVIQPQSADKYWAPHPQTGVFGPATINPVAAVAAVANHTADGGNYSIVEEEKAWFR 120

Query: 121 PTSLEDSEKPHGF 131
           PTSLEDSEKPHGF
Sbjct: 121 PTSLEDSEKPHGF 133

[Close]
BLAST of CmoCh16G002530 vs. NCBI nr
Match: XP_038901450.1 (late embryogenesis abundant protein At5g17165-like [Benincasa hispida])

HSP 1 Score: 221.5 bits (563), Expect = 4.3e-54
Identity = 107/129 (82.95%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 1   MAANSRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPS 60
           MAANSRSAG IAGL KRITDQIW  DPLRNS ISS+APK RRAAH+S YDKN DEQVRPS
Sbjct: 1   MAANSRSAGVIAGLGKRITDQIWTSDPLRNSVISSSAPKIRRAAHTSAYDKNPDEQVRPS 60

Query: 61  IVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNYSIVEEEKAWFRPTS 120
           +VPDDVIQ Q+ADKYWAP+PQTGVFGPA+ NP AA AN  A+GGNYS VEEEKAWFRPTS
Sbjct: 61  VVPDDVIQSQAADKYWAPHPQTGVFGPASDNPAAAAANRAADGGNYSAVEEEKAWFRPTS 120

Query: 121 LEDSEKPHG 130
           LEDSEKPHG
Sbjct: 121 LEDSEKPHG 129

[Close]
BLAST of CmoCh16G002530 vs. TAIR 10
Match: AT3G03150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17165.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-21
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 0 

Query: 5   SRSAGAIAGLRKRITDQIWNRDPLRNSAISSAAPKFRRAAHSSTYDKNHDEQVRPSIVPD 64
           S+S   I  LRK + +    R   R  A +SA    RR+ HSS YDKN ++++  S VPD
Sbjct: 6   SKSFQLITSLRKHLVN---TRASTR--ATASALFPSRRSGHSSAYDKNVEDELHASAVPD 65

Query: 65  DVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTANGGNY-SIVEEEKAWFRPTSLED 124
           +VI+P S DKYW+P+P+TGVFGP+T    A     TA G +  + V EE AWFRPTSLED
Sbjct: 66  EVIKPDS-DKYWSPHPKTGVFGPSTTEHSA-----TAEGAHQDTAVLEETAWFRPTSLED 119

Query: 125 SEKPH 129
           S+K H
Sbjct: 126 SDKTH 119

[Close]
BLAST of CmoCh16G002530 vs. TAIR 10
Match: AT5G17165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 4.3e-20
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 42  RAAHSSTYDKNHDEQVRPSIVPDDVIQPQSADKYWAPNPQTGVFGPATINPVAAVANHTA 101
           R  H+S YDKN +E+++PS VPD++I+P S DKYW+P+PQTGVFGP++    +  A    
Sbjct: 32  RNDHTSAYDKNVEEELQPSQVPDEMIKPDS-DKYWSPHPQTGVFGPSS---SSTNAKDEF 91

Query: 102 NGGNYSIVEEEKAWFRPTSLEDSEKPH 129
            GG    V EEKAWFRPTSLED +K H
Sbjct: 92  RGGQEDSVMEEKAWFRPTSLEDLDKTH 114

The following BLAST results are available for this feature:
BLAST of CmoCh16G002530 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4KFM86.1e-1955.17Late embryogenesis abundant protein At5g17165 OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of CmoCh16G002530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E3E93.3e-68100.00late embryogenesis abundant protein At5g17165-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1JAZ81.2e-6596.15late embryogenesis abundant protein At5g17165-like OS=Cucurbita maxima OX=3661 G... [more]
A0A1S3BYE51.4e-5080.92uncharacterized protein LOC103494437 OS=Cucumis melo OX=3656 GN=LOC103494437 PE=... [more]
A0A6J1CHE94.5e-4981.40late embryogenesis abundant protein At5g17165-like OS=Momordica charantia OX=367... [more]
A0A6J1FNH57.2e-4775.38late embryogenesis abundant protein At5g17165-like isoform X1 OS=Cucurbita mosch... [more]
BLAST of CmoCh16G002530 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922449.16.9e-68100.00late embryogenesis abundant protein At5g17165-like [Cucurbita moschata][more]
KAG6576842.15.8e-6798.46Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_022984594.12.4e-6596.15late embryogenesis abundant protein At5g17165-like [Cucurbita maxima][more]
XP_023552006.19.3e-6595.49late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo][more]
XP_038901450.14.3e-5482.95late embryogenesis abundant protein At5g17165-like [Benincasa hispida][more]
BLAST of CmoCh16G002530 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G03150.13.9e-2148.80unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G17165.14.3e-2055.17unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..59
NoneNo IPR availablePANTHERPTHR35122:SF2OSJNBA0093F12.14 PROTEINcoord: 1..128
IPR039291Late embryogenesis abundant protein At5g17165-likePANTHERPTHR35122OSJNBA0093F12.14 PROTEINcoord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002530.1CmoCh16G002530.1mRNA