CmoCh16G002520 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Cmo_Chr16: 1117026 .. 1124274 (+)
RNA-Seq Expression	CmoCh16G002520
Synteny	CmoCh16G002520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCCCTAGCGGTCACTTTAGGAAGCACTGGCAAAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACCAGAAGAAGAAATGGTTAGTGGTATTTTTTTGTTTTGTATGTTATTTTCCTGTGCTTCAGCTGGTGTCTGTGCATCACCATATCATTAAATTTGCCGTAGATATGGAACTCCTCTAACTAGTGTTTGATGAATCTACAATCAGCTCGTCAAGAGAAAGCTGTGAAGAACTTCCCCCGGCCAACTGCTGGACCACTCCGTCCCATTGTTCACGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGGAGGGGCTTCTCTCTCGAGGAATTGAAGGTATCCAGTCCCCCCATTTCTAGTTTCTATTTGCCTGACCTTTCCGGCCCTTTTAATGTCTTGGCGGTGGGGTTTTGTAGTAAGATCACTTGGATCAAATGTTTTTCAGCTTGGCTTTCAGGCTGCATGCTCTTAGAACTGGATCTTCTACATAGCTGTATATTTTATGCATGTACATTCTGTTATGGTCACTGGGAAGGATTTATTATCTTTACTATCTTTAGTTCACGATCATTTATATGGCATCTTAACTATCTAGTATTGGCCCCTTAGGCTGCTGGTATTCCCAAGAAGCTAGCACCTACAATTGGAATATCAGTTGACCATCGCCGAAGAAATCGCTCTCTCGAAAGTCTACAGGCTAACGTGCAGAGGCTGAAGACATACAAGGCGAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTCAAGGTCAGTTTGTCTAGAATCATACAACTCAAGTTGATTGTTATCGACTACTTGTTATGTACTTGATCTCAACATTTTGGCTATGAATGATTTAGGCTGGTGATTCAACTCCGGAGGAGCTCGCAAATGCCACTCAAGTCCAAGGACCATACCTGCCTATTGGACGTGAGAAGGCTCCAGTTGAGCTTGTGAAGGTCACTGAGGAGATGAAATCATTCAAGGCATACGACAAGCTACGTATAGAGAGGACAAATGAACGACATGTTGGTGCTAGATTGAAGAGAGCAGCAGAGGCCGAGAAGGAAGAGAAGAAGTAGATTGCTAGAACAACTGCGCAGAGGTCGTTCTATTTTCCTAATTTTTGGTATTTATTTTTACAACATTTTGAGCTTGACATATCTTCTGGACTTAATTTGGTAGATGAAAGTTCTGAGTTCATGGATTCAACGGTTATTTACCTTGGTTTTGTTCTTGTAGTATTGTTACTTCGTTGTGGTTTATTGCATCCAAAATAGCTTTGCAGTCTTTGCATTGCCTTTTTTATGGTTGAACTCAAATTCTTGCATCATTGGGCACTGGGTCGAAACCTCAGCGGTAGAAATGGAATTAACTCAAAAAGTATAGCGTATTTGATTTACTTTTATAAACTATTTTTTAAATAAAATTAATTATACTTCGAATTAAAATTAATTTTAAACTAGTTAAAATTTTGAATTAAGTTTATTATTAAATTATTTTTTCTAGAGTATTTGATTAGAAGATAATTCAAAAGGACTCCACATTTGTGAGAGGGAATTAATTTTACAAATAATATCCATGTAATGCTAAAAACATCATATTTTTAAATTTTGATTTTTTTGATCCTATGCTATAATTTCATTAAATTGGACCCTAAATTTAATTTAAAGATGCAATGTCCATAATGTTCATTTTATTGCCAAATCTTTGTAAATTCATTAATTTTAATAAAATAAAATTTTATATATAAAAATACACAAATTAATTATTGAATTTTTTTTTTCAAAATCTAAAAGTTTTAACAATATATATATATATATATTTTTGTTCTTTAAACTCTATTTAACGCTTCTAAAGTTTAAGTTAAGATTGCAGTATTTATTTATATTATTATTATCATTCTCAATAATAATAATAATAAGTAAAAGCGCAAAGGGAAATTATATGAATTTTGAAAAAGAAAAAAAAAACAAACGAAAATTTGTCATCTGAGAGGGATAAGGAGTATATATAGGTTTTAGAGGGAGATAAAATTGAAGATTGGAAATTGGCGCGGAGACTTGAGAAAGTTATCGAACGAAGCAGCGGCAGGTAAATTACCTGACGGCGAACCGCGGACGGCGGACGGCGGACGGCGGAATCGTCCTCTGATAGCTTTTGTCTTCCTACTTCCAGGCTTAGCGGCGTACTTCAATCGTATCGGCTACTCTGTAAACTCTCTTTCTCTCTCTGATGTCGCAAAGTTTATGGAATCCTGTGTGAAGAAGCAAGTAGAGCTTCACTTTCATTGTTATGTAAATCAAATCATTTTCCGGTTATTTATTCTCCTTGTAGTTCTTCGTCTTCGCACGGCCAGGTTACAGTGCATAAACCGTTTCCGTAACTTTTTGTGCGCTCTCTCTGCTGTTGCAATCATTTGGTATCAATTGTGAAGGAATAACAAGAAAATGAAGCTTCGTCTTCATTTTTAAGAAAATCAAATCGTCATCCTGTGGAATTTTCTTCATCTAGCTGTTCTTCTTTCAAGTCCGAGGTTACGGCAGCGTACGTCAACCATTTCTGTAAGCTCTCTCTCTCTCTCTCTCTCATTGCAATGTTTTCGGAATTATATGTGAGGAATATCAATAAAGTAGAGCTTCATTTTCATTTCTAAATTAATCAAATCAATACGAAACTTCTGCTCATCCTGTACTCTAAATTCAGGATTCGGTTTCTGATATTCACTTGCAACATTTGATTTGCATTTTCTAGGACAATGTTCACTAAGTTCGGATTCTTATCAGATGAAGGCGCTACAAACTATCGAGTTTGCTGATTTGACTTAGTAGGTTTCTCTGCTCACTCACTTCATCTTTCCGAATCCTGCTCAATTGGACCTCTCCGAGTTTGCGAGCAACGTTCTGCTGCTGGTGTGGGAGAAAGATATCATGAGTATGTTTTTTTGTAACGAGAAACTCTATCTTTCTGAATTCTCTCTGTTCCGACTCTATCGAATATGCTGATTGGTATGAGTATGTTTCTTTCTCAAACACTCGTCTTAATCTTTCTGAATTATTTTCTTGATGAACAGAAACGTTATATTTCTTCATTCTTCTGATATTATCGAGTCTGCTCAATCGAATAAGTATATTTCTCTGCTCAATGACCTAATTTTTCCGAATAATTTTTTTTTACAAGTAACTATATCTTTCTATATCTTTTCTCCGTAACTCTTTTGTAAGAAACTTTGCCTTTTACAATTCTAAATAGAATTAGTTCAAACAGATTTTCTGTTTAGTTTCTAAATTATTTGATTCACGAATCATCATGTGCGACTTGCTCATGGTGCTTGGAGGAGACCGAGATCAAATTAGCATTACTCCGAAATTGTATGGCTAATGAGCTAAGAGAGGGATGTTATTCTGACAGACGGCTTTATTTCTGGATTTTTTCAGACAAATCTTGCTCAATCTATGCACATTTTTCATGCAGTCTCTTTTGTTATTATTATTATTTTGTTTGAATTCTATGCTTTTTAAGAAATAAATTACAGTGTACTTTGTTTTCCTCAGTCATCCAGTCAATACTTTCAGAAATTCATTTTCAGATGTAAACGGACTGCTATTCATCTTTATATATGACAGTTGAAACGGTTTTTATAGATCAGTTATCTGACACTTATCATTAGACTGACTGACGGAAGAATTGGTATTTAATTTGCTTAGCTGCCGTACTTTTGTTGCGGGACTGAGATGTATGTGTTACAGTGATTTAGATATTTGTTACAATATTTCTAGAAGTACAAGAAGCTATTAGTCGCTTTAATCAGCTTCAATATGTCTATGCATATGTCAATGCAATATACATCATATTAATGAGTGCTACAAAACTACAATTGTAGTGCTTGATGTTCCATTTGGATTGTAACTTCTGGCCATGTTCTGTCATTTACATCTTCATCTTTTTTGTTTGCAGCATAAATATGCAATCTATTTTCTTGCCAAAAACATTCATCGTATACTCATTTGGTGGAGTATATTCTGGCACTTTGTTGCATCGAAGTTCTAGTAAATGTGATGGAAGGTATATGTTTGGCGATGCCGTATTAAAGTTGTTTAGGAAGAATGGCCTAAAAAAGGTCAGTAAAGCAGCATTATATGATAATTATACTATTAGCGCTAGGTGGCATGGATGTAAAGATCAAGAGGAACTATCTGGTGATTTGTGCAACTGTTTGATTCGTGACTATTGTAAGGTAGGGAATGTTGATGCTGCCATGTCTCTTCTTTCTCATATGGAGGCTGTAGGTCTCCATGCCTCTGTAGCATCTTACACATATTTGATTGAAGCTCATGGAAATGTAGGCAGGACTTTGGAAGCTGATATCTTATTTCAAGAAATGATTAGTTTTGGTCGTATGCCAAGAACAACGGTCTGCAATGCACTACTAAGAGGGTTCTTGAGAAAAGGCCTTTTAGATCTTGCATCTGATGTTCTTGTGTTAATGAGTGATTTAGATATTCAAAAAAATCAAGAAACGTATGAAATTCTCTTGGATTATCATGCCAATGCTGGACGGCTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGCTGAACTCATTTGTGTATAGTAAGGTTATTGTAATATATCAGAACAATGGCATGTGGAAGAAAGCAGTGGGGATCGTTGATGAGATAAGAAAATCAGGGATTTCTGTGGACAAACACATTTACAACAGTATCATAGATACATTTGGGAAATATGGTCAATTACCCGAGGCCTTAGAAGTGTTCAAAAAAATGCAGCAGGATGGTGTAATGCCTGATATAACGACCTGGAATTCGCTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCCCTGGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATTTTCATTACTCTAATTAGCTCGTTGGGTGAGCAGGGAAAGTGGGATATTATAAAGAAGAATCTTGATAGTATGAAGCTCAGAGGGCATAAGAATAGTGGCCTAGTTTATGAAATTTTAGTTGATATTTATGGGCAGTATGGTCAATTTCGGGATGCTGAGAAATGTATATCTGCTCTCAAGTCTGCAGGTCTTCTACCATCCGCTAGCAATTTTTGCATTATAGCAAATGCTTTTGCTCGACAGGTTTGATGCCCATCTTTACTAATTTTTCTTTTTGTGTTATGTAAGTTCTCTTGCTGCAAAAGTTAACTGAATTTTTATGGCCTTGGTTTGTTGTTAGTTCGTTGTTCTCTCTGCACAGAGATGCTGGATGTTTTCTATGAACAAAGAAATATTGTTGGTCGTGATTACTAAGTTATTGTGAGACAATTTTCTTGTATGTTGGTAATTCAATGTAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTAATGGAGGCAGAAGGAATCGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCGTTTGCTGTTGCTGGCAGACATTTGGAGGCGATGGCCATTTATCATCATATAGTTGAAGTTGTAAGTCTTCATGTTCGGTAATGCAAAGCCAGACCAGAAACATAGTTAAAGTCGCATGCAATCAAATTTCTTCCTTTTTTGTATTATCAAGATAATCCTATTATTCATCCTTATTACTTTGTCATATTTTTCTGAGAAGGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCGTATATTCGTGCAAAGAAGTTTCATAAGGTGCTTTCTTATCCTCTGGCCACATTAATTTTTGTTCCGATGAGTTTTCTAAATTTTTTAGATGAAGTTCTTCATTTATTGTCTATGTTTTGGCTGCATGAGATCGTTCAGTATGAAATTTTTTTGATACCTTCTAAGTCCTAACCATATCTGGCTAGGTCCCTGAAATATATAAAGAAATGGAACGTGCTGGTTGCACGCCAGATAGGAAGGCCAGAGAGATGTTGAAGTCCGTAACAGTGGTTCTTGAACAGAGGCATTGTAAGTTCACCCTTTTTGTACTTGTATTTCATAGTTCCTAAGCCAGAGCAGTCCTTGCATGATTGTGGTATAGTTCTTCACCACTTTGCCTCTAGGCGATGGTAAATTTAGCAAGTCCAGTCATAATTTGAAAATTTTATATTTGACGCATTATGCGTCTGACAGAAGGACTCCTCTTGAAAAATATTGCATTATATCTTAATTGGTATGGGGAGGGATGGTGTAATCAAAATGGTAAATGATCTTAGGTACAAGACCGATGGTCTGATGAATTAAGTTTCATGCATCTGAGAAAACGACCAAAAGTGGAAGTAAATCTTGTACATGTATTGATGCCTTTGTTTTGCATATGATAGAAACTATATTCTACTACATAGATCATTCAGTAACAACCAATTGAAAACCCTAGGAGTTTATATTGCATCTCCTCTACCAGCCTTTTGATCAATTACTCGTTGATTAAAAAGAAACTATTTTCTTATATCTAAGGCCACATTTCATTGTTTTTTTCCTAGAAAAAAAATATATGAAAAGACAGCAATTGAATGTTTGGATCTTGTTCATTGAAAAACAGTCGTAAAAAATTGATTTTACGTTTCTTTAGCAGCCATCTAAAATCTTGATCGAGGAATTGATCTACACCAAGAAAGTAGATCATAATGCCAGGTACAAACTGACCCTATTGCCTTAGAGTTGCTGTGAACATCTGGACATTCTCGTCAAGGAGGATCTATTATATGTCTAACAGTTTATAACGACATCAATGACAGGCCAACCTTCAAATGGACCCTGGGGAACTAGGGGCAGAAACAGTTTCTGGCAATAACCTTGGAGATGCAACGACGTCTATCTTGTAAGTTGTAACCATTATGATAATCATAGCACAAATTCTTTTATTATTCTATATGTTATTTGGGGATGAGAATCTTATCCTTAAAACCGGGGCGAAAATTGGATGCTGCTGATAACAATTGAGTAGTAGTTTGTTTATTCCTTAGTTTTTTGTATGAAGTGAAAATTATAATACTTCCTTTTATCCCTGTATTTTTTTAACGGAAAAAAATAATAATAGAACAAGGCCTCTGCAAAGAAGAAAAATAGGCAAAATGAAGGAAGAATAAACAAAGTTTTTTTTTTTTTTTAGCTAAACATATCCGAACTTGTATGAAATTCAATTGCTTAGAAATCCCATCTAAGATCGGGG

mRNA sequence

ATGTTATCCCTAGCGGTCACTTTAGGAAGCACTGGCAAAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACCAGAAGAAGAAATGGTTAGTGCTCGTCAAGAGAAAGCTGTGAAGAACTTCCCCCGGCCAACTGCTGGACCACTCCGTCCCATTGTTCACGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGGAGGGGCTTCTCTCTCGAGGAATTGAAGGCTGCTGGTATTCCCAAGAAGCTAGCACCTACAATTGGAATATCAGTTGACCATCGCCGAAGAAATCGCTCTCTCGAAAGTCTACAGGCTAACGTGCAGAGGCTGAAGACATACAAGGCGAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTCAAGGCTGGTGATTCAACTCCGGAGGAGCTCGCAAATGCCACTCAAGTCCAAGGACCATACCTGCCTATTGGACGTGAGAAGGCTCCAGTTGAGCTTGTGAAGGTCACTGAGGAGATGAAATCATTCAAGGCATACGACAAGCTACGCTTAGCGGCGTACTTCAATCGTATCGGCTACTCTGTAAACTCTCTTTCTCTCTCTGATGTCGCAAAGTTTATGGAATCCTGTGTGAAGAAGCAAGTAGAGCTTCACTTTCATTGTTATGTAAATCAAATCATTTTCCGGTTATTTATTCTCCTTGTAGTTCTTCGTCTTCGCACGGCCAGGTTACAGTGCATAAACCGTTTCCGTAACTTTTTGTGCGCTCTCTCTGCTGTTGCAATCATTTGCTGTTCTTCTTTCAAGTCCGAGGTTACGGCAGCGTACGTCAACCATTTCTGTTTCTCTGCTCACTCACTTCATCTTTCCGAATCCTGCTCAATTGGACCTCTCCGAGTTTGCGAGCAACGTTCTGCTGCTGGTGTGGGAGAAAGATATCATGACATAAATATGCAATCTATTTTCTTGCCAAAAACATTCATCGTATACTCATTTGGTGGAGTATATTCTGGCACTTTGTTGCATCGAAGTTCTAGTAAATGTGATGGAAGGTATATGTTTGGCGATGCCGTATTAAAGTTGTTTAGGAAGAATGGCCTAAAAAAGGTCAGTAAAGCAGCATTATATGATAATTATACTATTAGCGCTAGGTGGCATGGATGTAAAGATCAAGAGGAACTATCTGGTGATTTGTGCAACTGTTTGATTCGTGACTATTGTAAGGTAGGGAATGTTGATGCTGCCATGTCTCTTCTTTCTCATATGGAGGCTGTAGGTCTCCATGCCTCTGTAGCATCTTACACATATTTGATTGAAGCTCATGGAAATGTAGGCAGGACTTTGGAAGCTGATATCTTATTTCAAGAAATGATTAGTTTTGGTCGTATGCCAAGAACAACGGTCTGCAATGCACTACTAAGAGGGTTCTTGAGAAAAGGCCTTTTAGATCTTGCATCTGATGTTCTTGTGTTAATGAGTGATTTAGATATTCAAAAAAATCAAGAAACGTATGAAATTCTCTTGGATTATCATGCCAATGCTGGACGGCTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGCTGAACTCATTTGTGTATAGTAAGGTTATTGTAATATATCAGAACAATGGCATGTGGAAGAAAGCAGTGGGGATCGTTGATGAGATAAGAAAATCAGGGATTTCTGTGGACAAACACATTTACAACAGTATCATAGATACATTTGGGAAATATGGTCAATTACCCGAGGCCTTAGAAGTGTTCAAAAAAATGCAGCAGGATGGTGTAATGCCTGATATAACGACCTGGAATTCGCTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCCCTGGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATTTTCATTACTCTAATTAGCTCGTTGGGTGAGCAGGGAAAGTGGGATATTATAAAGAAGAATCTTGATAGTATGAAGCTCAGAGGGCATAAGAATAGTGGCCTAGTTTATGAAATTTTAGTTGATATTTATGGGCAGTATGGTCAATTTCGGGATGCTGAGAAATGTATATCTGCTCTCAAGTCTGCAGGTCTTCTACCATCCGCTAGCAATTTTTGCATTATAGCAAATGCTTTTGCTCGACAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTAATGGAGGCAGAAGGAATCGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCGTTTGCTGTTGCTGGCAGACATTTGGAGGCGATGGCCATTTATCATCATATAGTTGAAGTTGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCGTATATTCGTGCAAAGAAGTTTCATAAGGCCAACCTTCAAATGGACCCTGGGGAACTAGGGGCAGAAACAGTTTCTGGCAATAACCTTGGAGATGCAACGACGTCTATCTTGTAAGTTGTAACCATTATGATAATCATAGCACAAATTCTTTTATTATTCTATATGTTATTTGGGGATGAGAATCTTATCCTTAAAACCGGGGCGAAAATTGGATGCTGCTGATAACAATTGAGTAGTAGTTTGTTTATTCCTTAGTTTTTTGTATGAAGTGAAAATTATAATACTTCCTTTTATCCCTGTATTTTTTTAACGGAAAAAAATAATAATAGAACAAGGCCTCTGCAAAGAAGAAAAATAGGCAAAATGAAGGAAGAATAAACAAAGTTTTTTTTTTTTTTTAGCTAAACATATCCGAACTTGTATGAAATTCAATTGCTTAGAAATCCCATCTAAGATCGGGG

Coding sequence (CDS)

ATGTTATCCCTAGCGGTCACTTTAGGAAGCACTGGCAAAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACCAGAAGAAGAAATGGTTAGTGCTCGTCAAGAGAAAGCTGTGAAGAACTTCCCCCGGCCAACTGCTGGACCACTCCGTCCCATTGTTCACGGGCAGACATTGAAGTACAACATGAAAGTGAGGGCTGGGAGGGGCTTCTCTCTCGAGGAATTGAAGGCTGCTGGTATTCCCAAGAAGCTAGCACCTACAATTGGAATATCAGTTGACCATCGCCGAAGAAATCGCTCTCTCGAAAGTCTACAGGCTAACGTGCAGAGGCTGAAGACATACAAGGCGAAGGTGGTTGTCTTCCCAAGACGTGCTCGCAAATTCAAGGCTGGTGATTCAACTCCGGAGGAGCTCGCAAATGCCACTCAAGTCCAAGGACCATACCTGCCTATTGGACGTGAGAAGGCTCCAGTTGAGCTTGTGAAGGTCACTGAGGAGATGAAATCATTCAAGGCATACGACAAGCTACGCTTAGCGGCGTACTTCAATCGTATCGGCTACTCTGTAAACTCTCTTTCTCTCTCTGATGTCGCAAAGTTTATGGAATCCTGTGTGAAGAAGCAAGTAGAGCTTCACTTTCATTGTTATGTAAATCAAATCATTTTCCGGTTATTTATTCTCCTTGTAGTTCTTCGTCTTCGCACGGCCAGGTTACAGTGCATAAACCGTTTCCGTAACTTTTTGTGCGCTCTCTCTGCTGTTGCAATCATTTGCTGTTCTTCTTTCAAGTCCGAGGTTACGGCAGCGTACGTCAACCATTTCTGTTTCTCTGCTCACTCACTTCATCTTTCCGAATCCTGCTCAATTGGACCTCTCCGAGTTTGCGAGCAACGTTCTGCTGCTGGTGTGGGAGAAAGATATCATGACATAAATATGCAATCTATTTTCTTGCCAAAAACATTCATCGTATACTCATTTGGTGGAGTATATTCTGGCACTTTGTTGCATCGAAGTTCTAGTAAATGTGATGGAAGGTATATGTTTGGCGATGCCGTATTAAAGTTGTTTAGGAAGAATGGCCTAAAAAAGGTCAGTAAAGCAGCATTATATGATAATTATACTATTAGCGCTAGGTGGCATGGATGTAAAGATCAAGAGGAACTATCTGGTGATTTGTGCAACTGTTTGATTCGTGACTATTGTAAGGTAGGGAATGTTGATGCTGCCATGTCTCTTCTTTCTCATATGGAGGCTGTAGGTCTCCATGCCTCTGTAGCATCTTACACATATTTGATTGAAGCTCATGGAAATGTAGGCAGGACTTTGGAAGCTGATATCTTATTTCAAGAAATGATTAGTTTTGGTCGTATGCCAAGAACAACGGTCTGCAATGCACTACTAAGAGGGTTCTTGAGAAAAGGCCTTTTAGATCTTGCATCTGATGTTCTTGTGTTAATGAGTGATTTAGATATTCAAAAAAATCAAGAAACGTATGAAATTCTCTTGGATTATCATGCCAATGCTGGACGGCTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGCTGAACTCATTTGTGTATAGTAAGGTTATTGTAATATATCAGAACAATGGCATGTGGAAGAAAGCAGTGGGGATCGTTGATGAGATAAGAAAATCAGGGATTTCTGTGGACAAACACATTTACAACAGTATCATAGATACATTTGGGAAATATGGTCAATTACCCGAGGCCTTAGAAGTGTTCAAAAAAATGCAGCAGGATGGTGTAATGCCTGATATAACGACCTGGAATTCGCTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCCCTGGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATTTTCATTACTCTAATTAGCTCGTTGGGTGAGCAGGGAAAGTGGGATATTATAAAGAAGAATCTTGATAGTATGAAGCTCAGAGGGCATAAGAATAGTGGCCTAGTTTATGAAATTTTAGTTGATATTTATGGGCAGTATGGTCAATTTCGGGATGCTGAGAAATGTATATCTGCTCTCAAGTCTGCAGGTCTTCTACCATCCGCTAGCAATTTTTGCATTATAGCAAATGCTTTTGCTCGACAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTAATGGAGGCAGAAGGAATCGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCGTTTGCTGTTGCTGGCAGACATTTGGAGGCGATGGCCATTTATCATCATATAGTTGAAGTTGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCGTATATTCGTGCAAAGAAGTTTCATAAGGCCAACCTTCAAATGGACCCTGGGGAACTAGGGGCAGAAACAGTTTCTGGCAATAACCTTGGAGATGCAACGACGTCTATCTTGTAA

Protein sequence

MLSLAVTLGSTGKTMSGPGSTNLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRLAAYFNRIGYSVNSLSLSDVAKFMESCVKKQVELHFHCYVNQIIFRLFILLVVLRLRTARLQCINRFRNFLCALSAVAIICCSSFKSEVTAAYVNHFCFSAHSLHLSESCSIGPLRVCEQRSAAGVGERYHDINMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDIQKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHKANLQMDPGELGAETVSGNNLGDATTSIL

Homology

[Close]

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot
Match: Q8L844 (Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 3.1e-84
Identity = 164/442 (37.10%), Postives = 258/442 (58.37%), Query Frame = 0


Query: 354 VLKLFRKNGLKKVSKAALYDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMS 413
           +  L R N +  V    LY            +D+ EL   L N +I  + K G+   A+ 
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIE--------RDKLELDVQLVNDIIMGFAKSGDPSKALQ 298

Query: 414 LLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFL 473
           LL   +A GL A  A+   +I A  + GRTLEA+ LF+E+   G  PRT   NALL+G++
Sbjct: 299 LLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYV 358

Query: 474 RKGLLDLASDVLVLMSDLDIQKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSF 533
           + G L  A  ++  M    +  ++ TY +L+D + NAGR E    ++ EM+    + NSF
Sbjct: 359 KTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSF 418

Query: 534 VYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKM 593
           V+S+++  +++ G W+K   ++ E++  G+  D+  YN +IDTFGK+  L  A+  F +M
Sbjct: 419 VFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRM 478

Query: 594 QQDGVMPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKW 653
             +G+ PD  TWN+LI  +CK G    A E+F  M+ +G  P    +  +I+S G+Q +W
Sbjct: 479 LSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERW 538

Query: 654 DIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCII 713
           D +K+ L  MK +G   + + +  LVD+YG+ G+F DA +C+  +KS GL PS++ +  +
Sbjct: 539 DDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNAL 598

Query: 714 ANAFARQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGI 773
            NA+A++GL E+ V   ++M ++G++P+L+ LN LINAF    R  EA A+  ++ E G+
Sbjct: 599 INAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGV 658

Query: 774 SPDVITYTTLMKAYIRAKKFHK 796
            PDV+TYTTLMKA IR  KF K
Sbjct: 659 KPDVVTYTTLMKALIRVDKFQK 672

[Close]

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot
Match: A0A1D6IEG9 (Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4577 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.9e-81
Identity = 159/408 (38.97%), Postives = 251/408 (61.52%), Query Frame = 0


Query: 389 ELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADI 448
           E    L + LI  + +    DAA+ LL+  +A+GL     + T LI A G  GR  EA+ 
Sbjct: 225 EPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEA 284

Query: 449 LFQEMISFGRM-PRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDIQKNQETYEILLDYH 508
           LF E    G + PRT   NALL+G++R   L  A  VL  MS   +  ++ TY +L+D +
Sbjct: 285 LFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAY 344

Query: 509 ANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDK 568
             AGR E    ++ EM+  G + +S+V+S+++  +++ G W+KA  ++ E++ SG+  D+
Sbjct: 345 TRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDR 404

Query: 569 HIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNCKSGNLATALELFTD 628
           H YN +IDTFGKY  L  A++ F KM+++G+ PD+ TWN+LI  +CK G    A ELF +
Sbjct: 405 HFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEE 464

Query: 629 MQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYGQ 688
           M+E    P    +  +I+ LGEQ  W+ ++  L  MK +G   + + Y  LVD+YG+ G+
Sbjct: 465 MRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGR 524

Query: 689 FRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNLVMLNV 748
           +++A  CI A+K+ GL PS + +  + NA+A++GL +  + V++ M+A+G+E ++++LN 
Sbjct: 525 YKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNS 584

Query: 749 LINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHK 796
           LINAF    R +EA ++   + E G+ PDVITYTTLMKA IR ++F K
Sbjct: 585 LINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDK 632

[Close]

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot
Match: Q84ZD2 (Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0548300 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.3e-79
Identity = 156/408 (38.24%), Postives = 249/408 (61.03%), Query Frame = 0


Query: 389 ELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADI 448
           E    L + LI  + +    DAA+ LL+  +A+GL     + T LI + G+  R  EA+ 
Sbjct: 218 EPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEA 277

Query: 449 LFQEMISFGRM-PRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDIQKNQETYEILLDYH 508
           LF E    G + PRT   NALL+G+++ G L  A  VL  MS   +  ++ TY +L+D +
Sbjct: 278 LFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAY 337

Query: 509 ANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDK 568
             AGR E    ++ EM+  G + +S+V+S+++  +++ G W+KA  ++ E+  SG+  D+
Sbjct: 338 TRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDR 397

Query: 569 HIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNCKSGNLATALELFTD 628
           H YN +IDTFGKY  L  A++ F +M+++G+ PD+ TWN+LI  +CK G    A+ELF +
Sbjct: 398 HFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDE 457

Query: 629 MQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYGQ 688
           M+E         +  +I+ LGE+ +W+ ++  L  MK +G   + + Y  LVD+YG+ G+
Sbjct: 458 MRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGR 517

Query: 689 FRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNLVMLNV 748
           F++A  CI A+K+ GL PS + +  + NA+A++GL +  + V++ M A+G+E + V+LN 
Sbjct: 518 FKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNS 577

Query: 749 LINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHK 796
           LINAF    R  EA ++   + E G+ PDVITYTTLMKA IR ++F K
Sbjct: 578 LINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEK 625

[Close]

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot
Match: Q9FFZ2 (Putative pentatricopeptide repeat-containing protein At5g36300 OS=Arabidopsis thaliana OX=3702 GN=At5g36300 PE=3 SV=3)

HSP 1 Score: 289.7 bits (740), Expect = 1.1e-76
Identity = 169/408 (41.42%), Postives = 229/408 (56.13%), Query Frame = 0


Query: 390 LSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADIL 449
           +S  + N  IR +C+ G  + AMSLL+ + ++G      SY   IE   ++ RTLEAD L
Sbjct: 9   ISLSMYNSWIRYFCRTGETNEAMSLLAEIHSLGSRPDPLSYVSFIETLASLRRTLEADAL 68

Query: 450 FQEMISFGRMPRTTV--CNALLRGFLRKGLLDLASDVLVLMSDLDIQKNQETYEILLDYH 509
           F E++ F      +V   NAL+  +LRK                                
Sbjct: 69  FHEVVRFMIYGSYSVRLYNALVSRYLRK-------------------------------- 128

Query: 510 ANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDK 569
                 E +W ++NEMK++ F LNSFVY K+I IY++NGMWKKA+GIV+EIR+ G+ +D 
Sbjct: 129 ------EVSWRVVNEMKKRKFRLNSFVYGKIIRIYRDNGMWKKALGIVEEIREIGLPMDV 188

Query: 570 HIYNSIIDTFGKYGQLPEALEVFKKMQQDG-VMPDITTWNSLIQWNCKSGNLATALELFT 629
            IYNS+IDTFGKYG+L E L+V +K+Q+     P+I TWNSLI+W+C  G +  ALELFT
Sbjct: 189 EIYNSVIDTFGKYGELDEELQVLEKLQRSSDSRPNIRTWNSLIRWHCHHGAVDMALELFT 248

Query: 630 DMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYG 689
            +                                                          
Sbjct: 249 MI---------------------------------------------------------- 308

Query: 690 QFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNLVMLN 749
            F D  + +  LKS G+ PSA+ FC +ANA+A+QGLC++TVKVL++ME EGIEPNL+MLN
Sbjct: 309 -FEDIGELVGKLKSQGVAPSANLFCTLANAYAQQGLCKQTVKVLKMMENEGIEPNLIMLN 319

Query: 750 VLINAFAVAGRHLEAMAIYHHIVE-VGISPDVITYTTLMKAYIRAKKF 794
           VLINAF  AG+H+EA++IYHHI E V I PDV+TY+TLMKA+ RAKK+
Sbjct: 369 VLINAFGTAGKHMEALSIYHHIKETVWIHPDVVTYSTLMKAFTRAKKY 319

[Close]

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.6e-64
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 22  NLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAG 81
           N P +     + ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAG
Sbjct: 25  NQPARKTRRRI-ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAG 84

Query: 82  IPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELA 141
           IPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK K+V+FPRRARK KAGDSTPEELA
Sbjct: 85  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELA 144

Query: 142 NATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRL 181
           NATQVQG YLPI REK  +ELVK+T EMKSFKA+DK+RL
Sbjct: 145 NATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRL 182

[Close]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL
Match: A0A6J1E3F2 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430464 PE=4 SV=1)

HSP 1 Score: 971.1 bits (2509), Expect = 2.9e-279
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL
Match: A0A6J1E8S9 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430464 PE=4 SV=1)

HSP 1 Score: 971.1 bits (2509), Expect = 2.9e-279
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL
Match: A0A6J1J2J8 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482835 PE=4 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 1.6e-272
Identity = 472/482 (97.93%), Postives = 477/482 (98.96%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTL H+SSSKCDGRYMFGDAVL+LFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLFHQSSSKCDGRYMFGDAVLQLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISAR HGCKDQEELSGDLCN LIRDYCKVGNVDAAMSLLS+MEAVGLHASVASYTYL
Sbjct: 61  NYTISARCHGCKDQEELSGDLCNSLIRDYCKVGNVDAAMSLLSYMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGR PRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRKPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNL TALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLPTALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVL+LM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLELM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEA+AIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEALAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL
Match: A0A6J1J5P1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482835 PE=4 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 1.6e-272
Identity = 472/482 (97.93%), Postives = 477/482 (98.96%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTL H+SSSKCDGRYMFGDAVL+LFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLFHQSSSKCDGRYMFGDAVLQLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISAR HGCKDQEELSGDLCN LIRDYCKVGNVDAAMSLLS+MEAVGLHASVASYTYL
Sbjct: 61  NYTISARCHGCKDQEELSGDLCNSLIRDYCKVGNVDAAMSLLSYMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGR PRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRKPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNL TALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLPTALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVL+LM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLELM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEA+AIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEALAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL
Match: A0A6J1E3B7 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111430464 PE=4 SV=1)

HSP 1 Score: 922.9 bits (2384), Expect = 9.2e-265
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEV 772
           EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEV
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEV 458

[Close]

BLAST of CmoCh16G002520 vs. NCBI nr
Match: KAG6576841.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1212.6 bits (3136), Expect = 0.0e+00
Identity = 614/646 (95.05%), Postives = 615/646 (95.20%), Query Frame = 0


Query: 203 MESCVKKQVELHFHCYVNQIIFRLFILLVVLRLRTARLQCINRFRNFLCALSAVAIICCS 262
           MESCVKKQVELHFHCYVNQIIFRLF+LLVVLRLRTARLQCINRFRNFLCALSAVAIICCS
Sbjct: 1   MESCVKKQVELHFHCYVNQIIFRLFLLLVVLRLRTARLQCINRFRNFLCALSAVAIICCS 60

Query: 263 SFKSEVTAAYVNHFCFSAHSLHLSESCSIGPLRVCEQRSAAGVGERYHDINMQSIFLPKT 322
           SFKSEV AAY NHFCFSAHSLHLSESCSIGPLRVCEQRSAAGVGERYHDINMQSIFLPKT
Sbjct: 61  SFKSEVMAAYFNHFCFSAHSLHLSESCSIGPLRVCEQRSAAGVGERYHDINMQSIFLPKT 120

Query: 323 FIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYDNYTISARWH 382
           FIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYDNYTISARWH
Sbjct: 121 FIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYDNYTISARWH 180

Query: 383 GCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGR 442
           GCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGR
Sbjct: 181 GCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYLIEAHGNVGR 240

Query: 443 TLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDIQKNQETYEI 502
           TLEADILFQEMISFGR PRTTVCNALLRGFLRKGLLDLASD LVLMSDLDIQKNQETYEI
Sbjct: 241 TLEADILFQEMISFGRTPRTTVCNALLRGFLRKGLLDLASDALVLMSDLDIQKNQETYEI 300

Query: 503 LLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSG 562
           LLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSG
Sbjct: 301 LLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSG 360

Query: 563 ISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNCKSGNLATAL 622
           I VDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQ NCKSGNLATAL
Sbjct: 361 IYVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQRNCKSGNLATAL 420

Query: 623 ELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIY 682
           ELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIY
Sbjct: 421 ELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGLVYEILVDIY 480

Query: 683 GQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNL 742
           GQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNL
Sbjct: 481 GQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLMEAEGIEPNL 540

Query: 743 VMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHK------- 802
           VMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHK       
Sbjct: 541 VMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKFHKVPEIYKE 600

Query: 803 ------------------ANLQMDPGELGAETVSGNNLGDATTSIL 824
                             ANLQMDPGELGAETVSGNNLGDATTSIL
Sbjct: 601 MERAGCTPDRKAREMLKSANLQMDPGELGAETVSGNNLGDATTSIL 646

[Close]

BLAST of CmoCh16G002520 vs. NCBI nr
Match: XP_022922450.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922451.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922452.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922453.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922454.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922455.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922456.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922457.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_022922459.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 971.1 bits (2509), Expect = 6.1e-279
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. NCBI nr
Match: XP_022922460.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 971.1 bits (2509), Expect = 6.1e-279
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0


Query: 314 MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 373
           MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 374 NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 433
           NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 434 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 493
           IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 494 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 553
           QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 554 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 613
           IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 614 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 673
           KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 674 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 733
           VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 734 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 793
           EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 794 HK 796
           HK
Sbjct: 481 HK 482

[Close]

BLAST of CmoCh16G002520 vs. NCBI nr
Match: XP_023551942.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 966.8 bits (2498), Expect = 1.1e-277
Identity = 477/484 (98.55%), Postives = 482/484 (99.59%), Query Frame = 0


Query: 312 INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAAL 371
           INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDA+LKLFRKNGLKKVSKAAL
Sbjct: 24  INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAILKLFRKNGLKKVSKAAL 83

Query: 372 YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT 431
           YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT
Sbjct: 84  YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT 143

Query: 432 YLIEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDL 491
           YLIEAHGNVGRTLEADILFQEMISFGR PRTTVCNALLRGFLRKGLLDLASDVLVLMSDL
Sbjct: 144 YLIEAHGNVGRTLEADILFQEMISFGRKPRTTVCNALLRGFLRKGLLDLASDVLVLMSDL 203

Query: 492 DIQKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 551
           DIQKNQETYEILLDYHANAGRLEDTW IINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 204 DIQKNQETYEILLDYHANAGRLEDTWGIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 263

Query: 552 VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW 611
           VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW
Sbjct: 264 VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW 323

Query: 612 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNS 671
           NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWD+IKKNLDSMKLRGHKNS
Sbjct: 324 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDVIKKNLDSMKLRGHKNS 383

Query: 672 GLVYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQ 731
           GLVYEILVDIYGQYGQF+DAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVL+
Sbjct: 384 GLVYEILVDIYGQYGQFQDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLE 443

Query: 732 LMEAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAK 791
           LMEAEGIEPNLVMLNVLINAFAVAGRHLEA+AIYHHIVEVGISPDVITYTTLMKAYIRAK
Sbjct: 444 LMEAEGIEPNLVMLNVLINAFAVAGRHLEALAIYHHIVEVGISPDVITYTTLMKAYIRAK 503

Query: 792 KFHK 796
           KFHK
Sbjct: 504 KFHK 507

[Close]

BLAST of CmoCh16G002520 vs. NCBI nr
Match: XP_023551938.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551939.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551940.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023551941.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 966.8 bits (2498), Expect = 1.1e-277
Identity = 477/484 (98.55%), Postives = 482/484 (99.59%), Query Frame = 0


Query: 312 INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAAL 371
           INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDA+LKLFRKNGLKKVSKAAL
Sbjct: 24  INMQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAILKLFRKNGLKKVSKAAL 83

Query: 372 YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT 431
           YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT
Sbjct: 84  YDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYT 143

Query: 432 YLIEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDL 491
           YLIEAHGNVGRTLEADILFQEMISFGR PRTTVCNALLRGFLRKGLLDLASDVLVLMSDL
Sbjct: 144 YLIEAHGNVGRTLEADILFQEMISFGRKPRTTVCNALLRGFLRKGLLDLASDVLVLMSDL 203

Query: 492 DIQKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 551
           DIQKNQETYEILLDYHANAGRLEDTW IINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 204 DIQKNQETYEILLDYHANAGRLEDTWGIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 263

Query: 552 VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW 611
           VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW
Sbjct: 264 VGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQW 323

Query: 612 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNS 671
           NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWD+IKKNLDSMKLRGHKNS
Sbjct: 324 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDVIKKNLDSMKLRGHKNS 383

Query: 672 GLVYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQ 731
           GLVYEILVDIYGQYGQF+DAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVL+
Sbjct: 384 GLVYEILVDIYGQYGQFQDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLE 443

Query: 732 LMEAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAK 791
           LMEAEGIEPNLVMLNVLINAFAVAGRHLEA+AIYHHIVEVGISPDVITYTTLMKAYIRAK
Sbjct: 444 LMEAEGIEPNLVMLNVLINAFAVAGRHLEALAIYHHIVEVGISPDVITYTTLMKAYIRAK 503

Query: 792 KFHK 796
           KFHK
Sbjct: 504 KFHK 507

[Close]

BLAST of CmoCh16G002520 vs. TAIR 10
Match: AT5G42310.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-85
Identity = 164/442 (37.10%), Postives = 258/442 (58.37%), Query Frame = 0


Query: 354 VLKLFRKNGLKKVSKAALYDNYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMS 413
           +  L R N +  V    LY            +D+ EL   L N +I  + K G+   A+ 
Sbjct: 239 IQSLTRSNKIDSVMLLRLYKEIE--------RDKLELDVQLVNDIIMGFAKSGDPSKALQ 298

Query: 414 LLSHMEAVGLHASVASYTYLIEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFL 473
           LL   +A GL A  A+   +I A  + GRTLEA+ LF+E+   G  PRT   NALL+G++
Sbjct: 299 LLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYV 358

Query: 474 RKGLLDLASDVLVLMSDLDIQKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSF 533
           + G L  A  ++  M    +  ++ TY +L+D + NAGR E    ++ EM+    + NSF
Sbjct: 359 KTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSF 418

Query: 534 VYSKVIVIYQNNGMWKKAVGIVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKM 593
           V+S+++  +++ G W+K   ++ E++  G+  D+  YN +IDTFGK+  L  A+  F +M
Sbjct: 419 VFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRM 478

Query: 594 QQDGVMPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKW 653
             +G+ PD  TWN+LI  +CK G    A E+F  M+ +G  P    +  +I+S G+Q +W
Sbjct: 479 LSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERW 538

Query: 654 DIIKKNLDSMKLRGHKNSGLVYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCII 713
           D +K+ L  MK +G   + + +  LVD+YG+ G+F DA +C+  +KS GL PS++ +  +
Sbjct: 539 DDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNAL 598

Query: 714 ANAFARQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGI 773
            NA+A++GL E+ V   ++M ++G++P+L+ LN LINAF    R  EA A+  ++ E G+
Sbjct: 599 INAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGV 658

Query: 774 SPDVITYTTLMKAYIRAKKFHK 796
            PDV+TYTTLMKA IR  KF K
Sbjct: 659 KPDVVTYTTLMKALIRVDKFQK 672

[Close]

BLAST of CmoCh16G002520 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-65
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 22  NLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAG 81
           N P +     + ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAG
Sbjct: 25  NQPARKTRRRI-ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAG 84

Query: 82  IPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELA 141
           IPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK K+V+FPRRARK KAGDSTPEELA
Sbjct: 85  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELA 144

Query: 142 NATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRL 181
           NATQVQG YLPI REK  +ELVK+T EMKSFKA+DK+RL
Sbjct: 145 NATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRL 182

[Close]

BLAST of CmoCh16G002520 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-65
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 22  NLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAG 81
           N P +     + ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAG
Sbjct: 25  NQPARKTRRRI-ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAG 84

Query: 82  IPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELA 141
           IPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK K+V+FPRRARK KAGDSTPEELA
Sbjct: 85  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELA 144

Query: 142 NATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRL 181
           NATQVQG YLPI REK  +ELVK+T EMKSFKA+DK+RL
Sbjct: 145 NATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRL 182

[Close]

BLAST of CmoCh16G002520 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-65
Identity = 125/159 (78.62%), Postives = 140/159 (88.05%), Query Frame = 0


Query: 22  NLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAG 81
           N P +     + ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVR G+GF+LEELKAAG
Sbjct: 25  NQPARKTRRRI-ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAG 84

Query: 82  IPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELA 141
           IPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK K+V+FPRRARK KAGDSTPEELA
Sbjct: 85  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELA 144

Query: 142 NATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRL 181
           NATQVQG YLPI REK  +ELVK+T EMKSFKA+DK+RL
Sbjct: 145 NATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRL 182

[Close]

BLAST of CmoCh16G002520 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-64
Identity = 123/159 (77.36%), Postives = 141/159 (88.68%), Query Frame = 0


Query: 22  NLPGKPEEEMVSARQEKAVKNFPRPTAGPLRPIVHGQTLKYNMKVRAGRGFSLEELKAAG 81
           N P +     V ARQ+KAVK FPRPT+GPLRP+VHGQTLKYNMKVRAG+GF+LEELK AG
Sbjct: 25  NQPARKTRRRV-ARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAG 84

Query: 82  IPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELA 141
           IPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKAK+VVFPRR+R+ KAGDSTPEELA
Sbjct: 85  IPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELA 144

Query: 142 NATQVQGPYLPIGREKAPVELVKVTEEMKSFKAYDKLRL 181
           NATQVQG Y+PI   KA +ELVK+T ++K+FKAYDK+RL
Sbjct: 145 NATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRL 182

The following BLAST results are available for this feature:

BLAST of CmoCh16G002520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L844	3.1e-84	37.10	Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidop...	[more]
A0A1D6IEG9	1.9e-81	38.97	Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4...	[more]
Q84ZD2	2.3e-79	38.24	Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza...	[more]
Q9FFZ2	1.1e-76	41.42	Putative pentatricopeptide repeat-containing protein At5g36300 OS=Arabidopsis th...	[more]
P41127	1.6e-64	78.62	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]

BLAST of CmoCh16G002520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E3F2	2.9e-279	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
A0A6J1E8S9	2.9e-279	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
A0A6J1J2J8	1.6e-272	97.93	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
A0A6J1J5P1	1.6e-272	97.93	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
A0A6J1E3B7	9.2e-265	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]

BLAST of CmoCh16G002520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576841.1	0.0e+00	95.05	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022922450.1	6.1e-279	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
XP_022922460.1	6.1e-279	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
XP_023551942.1	1.1e-277	98.55	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
XP_023551938.1	1.1e-277	98.55	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]

BLAST of CmoCh16G002520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42310.1	2.2e-85	37.10	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G49010.1	1.1e-65	78.62	breast basic conserved 1	[more]
AT3G49010.2	1.1e-65	78.62	breast basic conserved 1	[more]
AT3G49010.3	1.1e-65	78.62	breast basic conserved 1	[more]
AT5G23900.1	1.6e-64	77.36	Ribosomal protein L13e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 728..787 e-value: 1.3E-10 score: 41.1 coord: 393..439 e-value: 8.6E-4 score: 19.3
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 464..490 e-value: 0.24 score: 11.7 coord: 569..598 e-value: 2.0E-6 score: 27.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 496..539 e-value: 2.3E-7 score: 30.9 coord: 600..646 e-value: 9.4E-10 score: 38.6
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 710..741 e-value: 3.5E-4 score: 18.6 coord: 744..777 e-value: 5.8E-5 score: 21.0 coord: 395..424 e-value: 5.9E-4 score: 17.8 coord: 534..566 e-value: 0.003 score: 15.6 coord: 604..636 e-value: 1.8E-6 score: 25.7 coord: 569..601 e-value: 1.5E-7 score: 29.1 coord: 499..531 e-value: 2.7E-6 score: 25.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 496..530 score: 10.610596
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 426..460 score: 9.404853
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 566..600 score: 12.616514
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 531..565 score: 9.196589
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 391..425 score: 9.470621
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 741..775 score: 10.018685
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 706..740 score: 9.229472
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 601..635 score: 12.375365
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 33..181 e-value: 1.1E-58 score: 198.1
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 42..125 score: 21.585093
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 656..811 e-value: 2.0E-27 score: 98.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 541..654 e-value: 6.0E-31 score: 109.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 373..540 e-value: 3.0E-27 score: 97.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..21
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 375..796
None	No IPR available	PANTHER	PTHR47942:SF13	OS06G0710800 PROTEIN	coord: 375..796
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 67..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002520.1	CmoCh16G002520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome