CmoCh16G002500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Polyadenylate-binding protein 1-like
Location	Cmo_Chr16: 1096687 .. 1110275 (-)
RNA-Seq Expression	CmoCh16G002500
Synteny	CmoCh16G002500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAGAGTCGCAGACAGAATCCGAAACCTAATCTAAGCAATTGGGAACCGAGAAAATACACATACCAACCAGCGATCGAGGGGCCACCGGAGACGGAGACGGAGATGGATCGCAATTTCAACTACGACGAGCATGACCACGAAGTTTATGGAGGCGATATCCCTGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGATTACGACGTCGAACCCAGTAGCGCCAACTCGAAGGTAGCTTCTCGACTTCTTCTCTCCTTCTTCCCCGTGTCTTTCATGGAGCCTCGTCTCTAATTCTCTGTGTTTTGGAATTGATTAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGGTATCTTCCTCTTTCATCTCTGTAATTCCGGAAGCTGGTTACTGGATCCGATTCTCGACGTGGTGGGAGGATTTACGTTGCTTGCATAAGCCTTGTAGTTCATTTGTAGGATAGAATTACATTGTTTGGCTCTATCTCTTTCGTGGACTTCGATTCAGTTGCTTTTCTTTACAGGAACATTCCAAAATCATATATTTTCATATCAACGGGATCGAATATTGCTGCCTGAATCGATAATCAGGTTGTTTGAAGTTCTAAGACCTAGAAATTGGCGTGGTCTTCAATGATAGGATTTTGGGGGAAAATAGGAGAGTTTTGTGATTGAATGGAAGAGTTCTTCAAATCTGGTTCCTCATCAAACCATAACAAAACAAAGCATAGATAGTTAGATATTGAAAATTCTGAAGCTTTGTGAATTGTTATTTGTAACCGACGATTTTAGCTTTTTTTCGTAATCAATCAGAGAGTTCTAATCCTTTCTAGATTTCAATGATATTTGACAAATTTCTTCTAATGTTCTCTCTTGTTTTGTTTCCTACTCACGCTATTTGAATCTGGAAATGTTGTCACGTTTGATAGTTTCTAAAGGCAAAAGGATTATGTCGATTTAATATTGTCATATGCTGTAATATTTTTCACGTATCAACACAACATATTGATTGTTTAAGTTATTATAGGTCTTTGTAACTAACATGTGTTCCTTTTAACATGTAAGAAGATTCATCCAGTACCTCTGCAACGCAGGCTGAAAAGGAGGAAGCGGATTCTCGATCTGTATATGTTGGTAATGTGAGATTCTCGATCTGTATATCGTAACCTCTCTCATCCCCCAAACTCTTTAGCACTGGTCTCATTTTCTTTCTCTTTTGTCATCCGACAACCATCGGTTGATCTTTACGATTTATACTTGGAACTATCTATAGTTCTGGAACAAAAAGTCGTAAAGCTTGTCTAATTGTTAACTTTTACAATTTCTTTCTTAAAACAACGACAAAGTTTTCATACTCGATTAGAAATATAGAGATATTCTTTTTGTTGGTATAAGAGGACTTTGAGAATAAATGGCTTTAGTCTTCCTCCTCCGCTTTCATACGGAGCAAACAACAGCTAGGACAATCATTTTAGGATGCCTCTTTTGTAATGTTTCCACTTCGTCGATGCTCTGTCGGTAAAGGGTCCTAAGAATTTCCATTGTTCCTTTCTTGATTGCATTGCATTTATCTAGCAAAGAAGTGAATTCTAACTTGTTCGGGTTTCTTCTTGTTGCTACCCCTTCATGAATTGATGTTATGCTGCTATCATGTCGAGCTTCTTGCACTCGTTAATTGTTTCCCCTGTATTATCTCTTATAATCTCAAAAACCTCGAATAAAAATATTGATTTGCCACTCATGTATCATGCCAAAAGGAGCTTTGGGCTTCAATTTGTGATGATATTTGCCACTCATGTTTTATGCCACATTCTCCTAATCTGAATCCTTTTTAGTCTTGACGGATGGAAGATTGAAGTGTTATTTCCCCTTGGGCATGCTTTCTAACATCATATTTCAATAGAAAATAATTATTCCTGTCGTGGCTTTTACTTCAGGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTTAATAGAGTGACAATTTTGACTGACAAATTTGGCCATCCCAAGGGATTTGCTTATGTCGAGTTCGTGGAGGTTGATGCTATCCAGAATGCTTTGCTGTTGAACGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCCCTTGAACTCGGATTTATGCTATAATTTTCCTTTTCATTTATTTCACTAATAGGCCACCGATAATGTATGTATATTAAAGGAAGACGTTGGGGGATGAGAGAAGTCGTGAGTGAAGAGTGTATATAGAGGGGGAAAGTATCTTTAGCAGGCATGCTTTTGTTAAGTAGACTTTGCTACGGTTGGGCGAGTAGGAGCTTTTTGCACGTACCCGTTCTTGTACGCCAATTGTCGATACATAATATTGAGTTGTGTCCCTGACCATGGTCAGTTTTTGGTACATTTTGCAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATTCAGAGGAAGGCGACCAAACTCTTTTGGCTTTCGAGGTCGTCGGCCTTTCCCTTCCGCACCTTTTCCTCCTTCGTATGGTTATGGGTAAGTGCTGAACTACTATATTGCTTTTCACTCCATGTTGAAATGCTGATATGCAATTGGCAAGTCACAGTATCTTCCTGGGAGGATAGTTTTCTGATTAGCAGGTTTTTTTGTACAAGTTTACGTCTTTTCGTGTAGGTAATATCTTATGTAGGAATAAATGTACTTCCCAACTTTTCTAGTTCGCATTATTGTATGTATACAACTGTCTTATGGTATGAGATCCCACATCGGTTGGGGAGCAGAATGAAACATTCTTTATAAGGGTGTAGAAACCTCTCCCTAGCTGACGTGTTTTAAAAACCTTGAGGGGAAGTTCAGAAATGAAAGTCTAAAGAGGACAATATCTGCTAGCAGTGGGTTTGGACTGTTACAAATGGTATAAGAGCTAGACATCGGGCGATGTGCCAGCGAAGAGGCTGAGCCCTGAAGGGAGGTGGACACGAGGCGGTGTGCCAGCAAGGACGTTGGGCCTTGAAGGGGGTGGTTTGTGAGATCCTACATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGGGTGTAGAAACCTATCCCCAACAAACGCGTTTTAAAAACCTTGAGGGGAAGCCGAATAGGAAAGTCCAAAGAGGACAATATTTGCTAGCGGCTTGGACCGTTACAGATGGGGGGACGGATACATTTACGATAGCGCCCGCCTGGAAATTATTTAAAGGGGAAATAGAGTATTGAGGCCATTTCTTTTCTTCTCTCTTTGCTGACTTGAAGGGATTTGTGGGATCATATATTCATCTGGTTGAAAACTCAATTCCTTTCTCTTTCAGCTTTATAATTCAAGTTGCTATATTCCTTTATGCAGAAGGGTTCCAAGGTTCAGACGGCCGATGCGGTACAGACCCTACTAGGAGATACAATGCTCGTACTATTACTGCAAACTATTGTTCGGGATCTACGGTTCCTTCGTCAAGGATTCGATTACAATCTCCATAACTTGGAGGGTGTGGAAAACAGTGTACTACTCTATTCATGTTTCAACGATCCCACTTGAGTTGTTTATGAACTTGGCAGCAGTTTCTAGCTTGAGGGGATGAAGATTTGTGGTTTACATTTTGTTGGGTGTGGAAGGGCTAAAAAGAACCATGTTATCAACCATTAGAGAATTTGGAAGAAAGAGAATTAAGGAAACTAAAGAACGTATCCTTGTGTATGGTGAATTGGAACTGATCATGATGTAGAATTCTTTGTTATTTAAGAAGTAATTATAAGTTGATATGAAGTTTAATCCTCTCCCTTTTTTTTGTTTGATTTTCTCTCTTATTTCAAACAAATTCTAAGTTGAAGATTAAAAATTAAAAAGTTCTATTTTTATTAGAATTTTTTTTGAATTTGTTAATTTGATAGAGAATAGTTGATCTGAATGTAAAAGTTAGAAAGGAGACGAAGGGAAGGGACGAAAACCTGACAAAAGAAAGGCCTATGATATGATATAGTAAGAAAGTACGGACAATAGTTGGTATGCAAAATATTGAAAAAGATAAAAATGACTAGATTTTATCGTACTTTTTCCTATAATAAGTTTGCGAATTTCTCGTACTAAAAATTATTATGTGAAACATTTTACAAATTAGTTAAAAATTGTACGATCTGTTTCTACACGGTTTACCATATGTACTACGAATTTCTCATATCCATAAATTTTCCAAATACGGTTTACCATATGTACTACGAATTTCTCATATCCATAAATTTTCCAAAATTTCAATAACACCCTTAACTTAAAAAATCTAAAAAATATTCTTATTAACGTGATGTAAAGGTGGTATTTTGTTTAAAGAATAACCTTGAATTTTAAAAAATTTCATTAATACTCTTTTTAACTATTAGTATTAGTACATGTTTAAAAAATACTATGAAATTTTAAAAGTAACCTGACCCTTTTTTATTTATATAAAAAAAATAATTCAATTTTTTAAATTCAATTTATTTACACAGCACAGCAAAACATAGTTAGCGCGGGCGTATTTCATTGCGTTGCGCCATCTATTTCAATCGCTTGCGGCTCTGGGGTTGAATGTAGCCATTGTTGAGAGCTCTGAACTTCGATCGCACGAGCTTTAAAGTTCAACTTGTCGGAATCAATGGCTTCTAATCATGAATTAAACGAAGAAGCAGATGATAATCCATCATCGTAAGTGTGTTTCTTGGTTCCTTCTCGTGTTCTCTCATTTCCCCTCCTCTTTTATTTCCTTTTAGCTAATTCTTCCTTCGTTTTTGCTATAGCTTCAATTCGAATTTCCTGTTCTGTTGAGCTGCTTGTGAGTTAAATCAATCTTCCTTTCCTGTTTGGCGAATCATTACCAGGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTGTACGTTTTTGCATAATTTAGGGTTTCTATATATGGAATGTTAGGACGATTTCTAATGCTCGAAGTGAGGAAAAAGCTATTGGATGTTCCAAAACAATAGAAATTTTCGAGTTTCTTCTTGTTTTAGTTAGAGAATTACTTCCAAACTCTTTCAGTTGAATTTAGTTTCAATTTGGAATTCTAATGAGCTAAATAGACGATGAAAAGATTTAGGTATTCAGAACCGAAGTGTGAGATCCCATATCGATTGGAGAGGGGAACGAAACATTCTTTAAGAGGGTGTGGAAATCTCTCATAGTAGATGCATTTTAAAACCTTGAGAGGAACCTTGAAAGGGAAAGTCCAAAGAGGACAATATTTGTTAGCGGTGGGCTTGAGTTGTTACAAATGGTATCAGAGGCAGACACCGAATGGTATGCCAGCGAGGACGTTGGACCCCACAGGGGGTGGATTGTGAGATCCCACCTTGGGTGGAGAGGGGAATGAAACATTCCTTACAAGGGTGTGGAAACCTCTTCCTAGTAGACGCGTTTTAGAACCTTGAGAGGAACCTTGAAAGGGAAAGTCTAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGTTGTTACAAATGGTATCAGAGACAGACACCGAACGGTATGCTAACGAGGACGTTGGGCCCCAAAGGGGGTGGATTGTGAGATCCCACGTTAGTTGGAAAGGGAAATGAAACATTCCTTATGAGAGTGTGGAAACCTCTTCCTAGTAGATGCGTTTTAGAACCTTGAGGGAAAGTTCAAAAGAGAAAGTAAAAAAAAGGACAATATTGGCTAGCCCTAAACTGGCATCTCCATGCCTTATCTTTTAAGCTTGACTGCACCTGTAACTTACAGTTTTTACTACAAAATTAATCTGTTATGAGCCTTCTCAACTCACGAGATCAGTGCTCGTCTGCTTGATCTTTCTTTCGACGATATGTTATGGTCTCGTACGACTTAAGTAGGTTTCTGAACCTGTCGAACTTCTTGTGGTTGCCATCTTCACGAACTCACTAGGATATGCTTCTTAACGAACTATGCTCGTTCAAATTGGTATCGAAATGTTGAATCAAATGCTTTTTATGCTCCGAGTTCTATGGCTGATCACCGAGTTTTTATACAGATTTGGCTCAGAATCGTTACCTTGAGGACGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAACCGGAGTATATTAAGTACATAATGTGAGTAAGATCTTTCCTTCATGTTCTTCATAAGCTTTTCCTGAACTGAAGAATTAGAACTGAATGTGATTTGGACTTCATTGTTGTTTCTTCTAGGTATCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGTTAACTTTTACATTTCATGTTCGTCGTGACTGATCGACGTCCATCGATTCCCCGAGAGAAGATAATTTTTCGCTTTCCGAGTGGTTTGCTCTTTATGTGCTGAAATTGCCCTTTTCCTGTTTCGTAGTATTTTGACCGTTGCGTCGTTTGGAATTTCTTAGGAACTGACACACAGACAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAACCACCTCCGGTTTCTGGTCCTCCCCAGGCAGCTGTGTCGGCCCCAGCCTCTGCTATGGCAGCTTCTCCTGCTGGTACCCCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCTGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGTAATTTATCGCATTATCAATGTGCTCTACTAGTAGGTTAGAAAACACCCTTTTCCCTTTTCCCTGTAAATTCTCAGTTACTTGTTCTGTGTTTTGACAGGAAAGAAGTATGTCGTAGTTGGTGGATGCTTGATAGCAGCTCATGAGGTAATCTTTCATAAACTTAACTTTCCAAGAGCTTCCCATCACTTGGGATCATGCTTACATGTCTAAAGATCATTCTTTTTGGCTTAATTCAAGTAAATGTTATAATTATTGTTTTGGCGATTTTTTGTTCGGATCGAAGTTTTACATTTTCTGTTTAAAATTCTAAAAGATTTATACTTCAAGAACACTTCCTGCTGCTCCGCTGCTTTCTCTCCAACTCATTTAAAATTCTAAAGAATTTTGATTTTCGTCAAGTAACTTGTCATCTACATCATTATTTTATTAATATTTTTATAAAATTGAGATCTCGACATTTTCATCAGACACCGTTGTAAGATTTAGTGTTAACTTAAATCGAGGAATGACCTGCGAAACGCCCATAACCTCACCTGCAATGCAAGCATGGGCTATGACAAGATAAGTTTCTTTTTGCATGGGCAACTTCTCTCTCTTTTCAATCCAAACCAGATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAAAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACGTCGTCAAGCCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCTACGTTGGCGACCGAGATGCCTTAGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGACGATATGAACCATGGCCAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATCGTCGCAGGTGAGTGCATCGGATAATTTTAGGTTAAAAAATAAACTTAATTAGAACATATTTATCCATTTCATTACCTTAATTAAACATGTTTATGCCGAATTATATAAGTTTGGATTAACATAAATTGGACATGTAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAATGTGGCAATCTTAACCTTCAACTTTAGAGACGGTTGCAAAATTAGCTGATATGTTCTAGCTCTTCGACGAAAATAAATTAATAAAAAAATTTAAATTTTAACAAAAATAATAAAAAAAAAAATTGCAAGACTACCCTAAGAATCAGACGAGCTATTCTCAAACTGGTTTGTTACTTGGTGTAGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAAGCAGCCCTTTTTGTAACAGTCATTGGTGTGTTACTGTTTAGGCAAACCAAAGATATTGAAGGCTTAAGAAAGCTAGCCGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCGTGGCAAAACCAAAATGAAAACTCCACCTAGAAAATATATTTAATTTCTCTTTAATAATTATTTTATTTTATATTTGCGAGATCGAGAGGAGAACAAAGTATTCTTCATGAGGATGTGGAAATCTCTTCTTAGTTGACGCATTTTTAAAATTGTAAGTTTAGCGACGATACATAATAGGCCAAAATGGACAATATCTCTTAGCGATCAACTTAGACTGTTACAACATTTTTCAAATTTAGCCTTGTTTTTAACTATATCTTTCTTAACCAACTTGAATATAGTCAAGACATACAATTTTATTCCTTCACCTCCACTCGTTGTTGAGTAAAAAAATTGTATTTATGTGAGATCTCAGATCGATTGGAGAGAGAAACGAAACATTCTTTATAGGGGTGTGGAAACCTCTCTTTAGTAGACTCGTTTTAAAAATCTCGAGGAAAGGTCCGAAAGAAAAAGCTCAAATAGGACAATATATACTAGTGGTGGTCTCAAGTGTATTGCGAGATTCCACCTCGGTTGGAGAGAGAAACAAAATATTCCTTATAAGGGTGCGGAAACCTCCCCTAACAAACGCGACAAAATCTACCATATTTTTGCGTACATATTTTATAATATATGAAAATAAAAATGAAGAATTAAAGTAAATAGTTGGGATAGTATTGCACATGGATTTGGGCCATAATGGAACTCGAGTTATTGTTTGAAATGTAAATGAATTGGGCCCATTAAAAAAGGAGGGTTAAAATGTGCTCAATTTGCAAATTGGGAGGATAATGGGTTGGGAAGTGGGTCAAGTGGATGAATTTAGAGGACACCCACATGGATTCTGCCCTTAAAAAAACATCACTTTTTTCTGATATTTTATGGAAGTTAATAGGCATGTGTTTTCTCTGACCATGATTGCATATATTGTGCCCTAGATTCTCATCCATTCTAGTGCTCTATTCCTTTTGCCCCTTCCTCTTTGTGTGCTAAGATATTTTTGTGTAATATCATATTTTCTTTCATTATCTTAAAAATTAAATTATTAATTTAATTCAATCAAAAAATAAATATAGAATCGAACCCGAGATCTCTTCGTTTTATATCATGTCAAATTACCAATCAGGCAAAAAAATTAAGCTGATTAATTAAGGTAAATGATGTATAATTGGTGATATTTCCAAATAATCTTAGGGTTTGTATAGGAAATTAGCTTTTAAATAGTTTTTCTCAATCATATTTCTTGAAAATGTGTTCGACTATTCTTTAATGTAATAGTAGAAGAAGGTTTTAGCTACCTTTAATATGATCAATTAATTTATAAATATTAATTTTTTTATGCATATTAGTTCAATGATTTAATGTCTTTCGTTATTCATGTCATTTTTTATATTTTCAGGTATTGTTACTAAAAACCTTATTCAATCCGCATAACGGTCTTGAAAACGCTACTTTCCACTATTTTTTGGTTTGAGAATTAAAACACTTCCCCTAAAAAATTATATTAATTTTTAATGGTTTTTTTTTTTTATATTATTATGTTAAATATCAAAACCCATTCTCTATATCCAAACCCACTTATTCAAGATTTTCTAAAATTATTAAATATTCCAATTTGTCCATAGGAATTTGAAAAATATCAAGCATGTAACTCATCATTACATAATCCAGTGGTATTCAAATAAGTCAACCCCTTTTTGCAATGTTTTGAAAATTTTATATTAATTTGTAAATATTTGAAGTAACTTGTTTGTTCGAGTATAATTAACCTATCAACATAATTATTACTTATAATTATTGAACTAAAAAATACCATCATTTAAATATAATTCAATTAATTAAAATATTATTATATATATTTTTAGTCAAATTCCATATTTTTTACATAAGAGTAATAATACCAAACAATTTAAATATAAGCTAATTAATACTTTTAATTATAATAAATTTATTTTTAAGAAAAAGAAATTGTGGAGTACACGTGGCAAGAAACTAAAGGGGTGAGTTTGAATATTTATAGAGAATCACAACCGTCCAACCAAAGAACGTGGAAGTCAAAGTCGTTATCTTTCTTTCCCACTTAATGTCACGGAACAAATTATCCTCCTAGAAAAGAAAAAAAAGAAACTGTCCTAATAAATTCCATCACGGTCCAATTCTATTTCATTTGGTCCACGTGGCTTTACTGGAATGGACTGTTAAAATCCAAAGGTGCCTACCACCACTCCCTTTAGTCGGTTAACTGAAAGTGAGGTGTTAAAATCTAACATACACTAAAATTCACAATTTTTTTTTGCTTTAAAAAAAAAATCACAAAATTATATATAAATAATAATAATACTAATAATAATAATAATTATTATTATTATTATTATTTTTATCTTTACAATTATATAAATAAAAATTTCATATTAATATTTAGTGTAAGGGACGTAAAGAATGTAAAATAAAAATGTGTAAATTGGTTAAAATATTTAATATTAAAATTTAGCTCGTATTATAAAATGAGGATTTAGGCATGTTTAGTTGAAAAAGACAGCATTAATTGACGTTTTCTTTTTTCTTCTCTTTATGGTCGGAATTTATAAATTTTTATTCAGTATCTATGTTTTTTTTCGTGAAAATTCTAAAGATTTTAGTTGGAAAATGACTCCCAACTCATTTCGTTTCGAAAAAGATTTAAAAAAATCATGAACCAAATGTTTTTTAATCATACTTACGTGATTTGAAGCAACTTGTGGAGTGAATATTCGTTATCGGACAAATTGAGATGCAATTTTAATTCTTAGATTCATCGATCGTTCAAACAACTCAAGCTAACCCAACCTAGTATTTCATGATTTGAGGGTTTTTTGAATTAAAAAATTTACGAACCAAATAATTGGGCTGAGTCTAAAAAATAACTTAATCCGACTAAACTTAACTCATAAACATTTTTACGTCACCGTTAGCTTAATAAATAGCGAAAATTTGTAACTTAAAAATAAGGAAAATTTATAGAATGGGAGACAAAAATGGGAGACAAAAAGGATAATATATAGAAGAGAAATCCTTTTCAAATAATTTGACTTTTTTTTTTTTTTTAGATATGAAACTATTTTAAAGATCTTTTTGGATGATAAGGGTTTTTTTTTTTTTTGCTTTCGATTTTTAGTGTTAATTTCCCGTAATTTAATTATATATTATATATTAATTAAATCATATTTTGAAAAATTAGAATATGATTATTTATCAATTTGTAACTATACATTTCATAAATAAAATTAAATAAAAATAGAATCTAAATCCAAAAGTTTAGGGCACAAAGATTGATATTACGTCAACCTTACTCAACTCCCACTATAGAGATATTTTTCCCTTTAAAAACTGACCTTATCAACATAGCTTCATTACATGAGCATATACATCCATACAACAAGTTACAAGCCCATTTTTGGAAAGAGAATTAGACCCACCTCAATATCCACTTTTCATAAACATAATTATATTATTATGATATGGTTTGTGATGAGCGGGTCAGAGGGAGGATAAAGAATATAATCTATCTTTCAATAATAAATTTCTATTAGGGATGACAAGACTTAACTTAACAGTTTCTTGCATGACTCATTTTTCGTGCTTAGACCCACCCAAATTTTGCGGCCCAAAAATAGGAGAGAACCCACCTACGTGTGCCTACTGGTGCTCTTGCAAAAGCCTGAGCCAGTAATTGGCTAAGATCCGTTCTTGCGCACGAAGGGCAACAAGCAATTAGGCCTTGCTTTCATTTGGTCGATTTAGTGAGATCGTATTCTTCCTCAAGTTTGGAGTTGCTCTTAGCTGGTCGGGTTGCAGGCTTGCAAACCCATTTCGCTGCCATAGTTTCGGGTTCATTAGGCCCTCTTTTTTATGCTAATACCCTAGGAATGGAATTGAACCGAGTATAACCTTTTTTAGGAATAAAGCCTATTCTTCCTTTTAAGGGCGTAATATATAAATTAAAATAAAAAAATAAAATTATTTAAATAGTGCATACATGTGAAATTGTGAATTGTCATCCATTAAAATTCACATTAAATGTGATCAGATCAAAATAATTTAAAATTTTTATAAAATCAAATCAATCAAACCAACTTGATTTGGTTGATATTAAGGATGTGTTATTTTATTTTTGTTTTTTTGTCATCTTATATATTGTAATGCTAAAAATAAATATTATTTAATAACTTTTATGTGATGTTTTGGTGTTTTTGTGGGGTAAAATTGTGGAGTATGGACAAGTGCATTCACAAGGGGAAATAATAATGAATATTAAATAATAAAATAATAATAATTAATAATAAAAAGAAAAGGTGAAAAGTACGTCACAGGTTTCACTATAAATGCCACTTCGACGATCACCACCACAACACAAATCCTCTCCGCCTTCCGATTAACAATTTCAAATCTCTCTCTCTCTCTCTCTCTCTCTCAAAACCCCAATAAAAATATGAAGAAACCATCACCATTTCATCTCTCTCCTCTCTTTTTTCTTCTCTTCTTCATCACAGCTTCCTCCGCCGTACACGGCCGGAAACTGCTCAACTCTCCAGACATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCTCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGGTCGGGTTCTGGTCGCTCCCCGACTGGGTTCGGGAAAGGTTATGGATATGGATTTGGTTCCGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGTTATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAGAGCAGACATGGGTAG

mRNA sequence

AAAACAAGAGTCGCAGACAGAATCCGAAACCTAATCTAAGCAATTGGGAACCGAGAAAATACACATACCAACCAGCGATCGAGGGGCCACCGGAGACGGAGACGGAGATGGATCGCAATTTCAACTACGACGAGCATGACCACGAAGTTTATGGAGGCGATATCCCTGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGATTACGACGTCGAACCCAGTAGCGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACGCAGGCTGAAAAGGAGGAAGCGGATTCTCGATCTGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTTAATAGAGTGACAATTTTGACTGACAAATTTGGCCATCCCAAGGGATTTGCTTATGTCGAGTTCGTGGAGGTTGATGCTATCCAGAATGCTTTGCTGTTGAACGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATTCAGAGGAAGGCGACCAAACTCTTTTGGCTTTCGAGGTCGTCGGCCTTTCCCTTCCGCACCTTTTCCTCCTTCGTATGGTTATGGGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATTTGGCTCAGAATCGTTACCTTGAGGACGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAACCGGAGTATATTAAGTACATAATGTATCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGAACTGACACACAGACAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAACCACCTCCGGTTTCTGGTCCTCCCCAGGCAGCTGTGTCGGCCCCAGCCTCTGCTATGGCAGCTTCTCCTGCTGGTACCCCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCTGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGAAAGAAATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAAAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACGTCGTCAAGCCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCTACGTTGGCGACCGAGATGCCTTAGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGACGATATGAACCATGGCCAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAAGCAGCCCTTTTTGTAACAGTCATTGCTTCCTCCGCCGTACACGGCCGGAAACTGCTCAACTCTCCAGACATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCTCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGGTCGGGTTCTGGTCGCTCCCCGACTGGGTTCGGGAAAGGTTATGGATATGGATTTGGTTCCGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGTTATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAGAGCAGACATGGGTAG

Coding sequence (CDS)

ATGGATCGCAATTTCAACTACGACGAGCATGACCACGAAGTTTATGGAGGCGATATCCCTGACGACGCCGAGATGGATGCCGACCTCGACATGTCCTCTGGTAGGGCCGACGAAGAAGATTACGACGTCGAACCCAGTAGCGCCAACTCGAAGGACTTGGAGGACATGAAGAGGAGGCTTAAGGAGATCGAAGAGGAGGCCGGTGCCCTTCGTGAAATGCAGGCCAAGGTCGAGAAGGAGATGGGCGCTGTTCAAGATTCATCCAGTACCTCTGCAACGCAGGCTGAAAAGGAGGAAGCGGATTCTCGATCTGTATATGTTGGTAATGTTGACTATGCATGCACTCCTGAAGAGGTCCAACAGCATTTTCAATCATGTGGAACAGTTAATAGAGTGACAATTTTGACTGACAAATTTGGCCATCCCAAGGGATTTGCTTATGTCGAGTTCGTGGAGGTTGATGCTATCCAGAATGCTTTGCTGTTGAACGAGTCGGAGTTGCATGGTCGTCAACTAAAGGTCTCTGCTAAAAGGACAAATGTGCCTGGCATGAAGCAATTCAGAGGAAGGCGACCAAACTCTTTTGGCTTTCGAGGTCGTCGGCCTTTCCCTTCCGCACCTTTTCCTCCTTCGTATGGTTATGGGCCTACGAATGTCTACAAAGATCCGGATGACGGGCGGCAGCGGTTCTTGCTCGAATTGGAATTTGTTCAATGTCTTGCCAATCCAACCTACATTCATTATTTGGCTCAGAATCGTTACCTTGAGGACGAAGCTTTTATTGGTTACTTGAAGTACCTTCAATATTGGCAACAACCGGAGTATATTAAGTACATAATGTATCCTCATTGTCTTTTTTTCCTTGAACTTCTACAAAATGCAAACTTCCGAAATGCAATGGCTCATCCTGCCAACAAGGAACTGACACACAGACAGCAATTTTACTTCTGGAAGAACTATCGGAACAATCGTTTGAAACACATTTTACCTCGACCCCTACTCGAACCTGCAGCTCAACCACCTCCGGTTTCTGGTCCTCCCCAGGCAGCTGTGTCGGCCCCAGCCTCTGCTATGGCAGCTTCTCCTGCTGGTACCCCCCTTTCTCCAATGCAGTATGGTGTTCCCCCTGGTTCTGGGATTTCAAAGAACGATATGAAGAATGCAGGAATCGATCGACGAAAGAGAAAACACGAAAGAAATTTTATCAGAGAAGGCCAAAATCAGAGCCAAAACAAGCGGCCACTAAACATAAAAGGAAGGCCAAAAGAGCTTAGAAATCTCAAAGACATGGCTTCAATTGCTATCTCTGCCTCATTTCCAAGATCATGTACTTCAAATCATGTCTCCAACAAGCAACAACGTCGTCAAGCCCGACCTACCTATTCCTCCATGACGAAAAACCCGACCCCAGAGCTAATCAAAACTCCCTACGTTGGCGACCGAGATGCCTTAGACGCTCCCAAACGTCATGGAAACGTTGCATCAGCTACGGACAAGCTAGAGGAAGATACTGACGATATGAACCATGGCCAAACGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTCAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATCGTCGCAGAAGCAAAGAGGAGGAAGTTTCTTGAATTGTATCCAGAAACAGCTACAAATCACGAACCAGTGCTCTTTAGAAGCTCCATTATACCTTGGTGGGCATGGCTCACCAAATCCTACCTCCCACAAGCCGAACTACTTAACGGTAGGGCAGCAATGATAGGGTTCTTCATGGCCTATCTAGTGGATGCATTAACAGGAATTGGAATAGTTGGGCAAAGTGGGAATTTCATAAGCAAAGCAGCCCTTTTTGTAACAGTCATTGCTTCCTCCGCCGTACACGGCCGGAAACTGCTCAACTCTCCAGACATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCTCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGGTCGGGTTCTGGTCGCTCCCCGACTGGGTTCGGGAAAGGTTATGGATATGGATTTGGTTCCGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGTTATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAGAGCAGACATGGGTAG

Protein sequence

MDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGRRPNSFGFRGRRPFPSAPFPPSYGYGPTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVSGPPQAAVSAPASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHERNFIREGQNQSQNKRPLNIKGRPKELRNLKDMASIAISASFPRSCTSNHVSNKQQRRQARPTYSSMTKNPTPELIKTPYVGDRDALDAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKAALFVTVIASSAVHGRKLLNSPDMYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGSGSGSGYGYGSGGGGAHGGGYGSGSGYGNSGDSGDGGGYGGSSGGGYGNSSGGEYPPSAVTKDKSRHG

Homology

[Close]

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.4e-70
Identity = 151/224 (67.41%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 7   YDEHDHEVYGGDIPDDAEMDADLDMSSGRADEE-----DYDVEPSSANSKDLEDMKRRLK 66
           +DE +HEVYGG+IP++ E + D +       EE     D ++EP S +S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGS-SSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQ 126
           EIEEEAGALREMQAK EK+MGA QD S    + AEKEE DSRS+YVGNVDYACTPEEVQQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQ 123

Query: 127 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 186
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+A+QN+L+LNESELHGRQ+KVSAKRTNV
Sbjct: 124 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNV 183

Query: 187 PGMKQFRGR-RPNSFGFRGRRPF-PSAPFPPSYGYGPTNVYKDP 224
           PGM+QFRGR RP    FR  R F P  PF P Y YG    ++ P
Sbjct: 184 PGMRQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRP 221

[Close]

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot
Match: Q8VYB1 (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana OX=3702 GN=MED31 PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.7e-69
Identity = 137/184 (74.46%), Postives = 149/184 (80.98%), Query Frame = 0


Query: 216 PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY 275
           P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY
Sbjct: 18  PKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 77

Query: 276 IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE 335
           IK+IMYPHCL+FLELLQN NFR AMAHPANKEL HRQQFY+WKNYRNNRLKHILPRPL E
Sbjct: 78  IKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPE 137

Query: 336 PAAQPPPVSGPPQAAVSAPASAMAASPAGTPLSPMQYGVPPGSGISKNDMKN---AGIDR 395
           P    PPV+ P  +   AP++  A SPA   LSPMQY     + +SKND +N    GIDR
Sbjct: 138 PVPPQPPVA-PSTSLPPAPSATAALSPA---LSPMQY----NNMLSKNDTRNMGATGIDR 193

Query: 396 RKRK 397
           RKRK
Sbjct: 198 RKRK 193

[Close]

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.2e-67
Identity = 144/218 (66.06%), Postives = 172/218 (78.90%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANS-KDLEDMKRRLKEIEEE 67
           +E +HEVYGG+IPD  EMD D++     A   D D+  +  ++ K+L++MK+RLKE+E+E
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDME-----ALNPDLDMAAADDDAVKELDEMKKRLKEMEDE 61

Query: 68  AGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSC 127
           A ALREMQAKVEKEMGA QD +S +A QA KEE D+RSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 62  AAALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 121

Query: 128 GTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQ 187
           GTV+RVTILTDKFG PKGFAYVEFVEV+A+Q AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 122 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 181

Query: 188 FRGRRPNSF-GFRGRRPFPSAPFPPSYGYGPTNVYKDP 224
           FRGRR N + G+R RRPF S      YGYG    ++ P
Sbjct: 182 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRP 213

[Close]

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.5e-64
Identity = 143/220 (65.00%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDA---DLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIE 67
           +E +HEVYGG+IP+  + D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 68  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQ 127
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEE D+RSVYVGNVDYACTPEEVQ HFQ
Sbjct: 62  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 121

Query: 128 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGM 187
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+A+Q AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 122 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 181

Query: 188 KQFR-GRRPNSFGFRGRRPFPSAPFPPSYGYGPTNVYKDP 224
           KQ+  GR   S G+R RRPF    F   YGYG    ++ P
Sbjct: 182 KQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRP 210

[Close]

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.4e-41
Identity = 80/115 (69.57%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 513 FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLFRSSIIPW 572
           F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK+LE  PET +N EPVLF +SIIPW
Sbjct: 102 FQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPW 161

Query: 573 WAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKAALFVTV 628
           WAW+ + +LP+AELLNGRAAMIGFFMAY VD+LTG+G+V Q GNF  K  LFV V
Sbjct: 162 WAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAV 216

[Close]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL
Match: A0A4U5MIM5 (Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_0000306630 PE=3 SV=1)

HSP 1 Score: 605.9 bits (1561), Expect = 2.3e-169
Identity = 314/404 (77.72%), Postives = 344/404 (85.15%), Query Frame = 0


Query: 2   DRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLK 61
           D   +  EH+HEVYGG+IPD+ EMDAD+DMSS RA+E++Y       NSKDLEDMK+RLK
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSKDLEDMKKRLK 65

Query: 62  EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQ 121
           EIEEEAGALREMQAKVEKEMGAVQDS   SATQAEKEE DSRS+YVGNVDY+CTPEEVQQ
Sbjct: 66  EIEEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQ 125

Query: 122 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 181
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV
Sbjct: 126 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 185

Query: 182 PGMKQFRGRRPNSFGFRGRRPFPSAPFPPSYGYG----PTNVYKDPDDGRQRFLLELEFV 241
           PGMKQFRGRRP+ +GFR RRPF +APF P+YGYG    P  +YKDPDDGRQRFL+ELEFV
Sbjct: 186 PGMKQFRGRRPSPYGFRSRRPFMAAPFYPAYGYGRVPRPKKIYKDPDDGRQRFLMELEFV 245

Query: 242 QCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFR 301
           QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY+K+IMYPHCL+FLELLQNANFR
Sbjct: 246 QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFR 305

Query: 302 NAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVSGP---PQAAVSAP 361
           NAMAHP NKEL HRQQF+FWKNYRNNRLKHILPRPL EP   PP  + P   P   VSA 
Sbjct: 306 NAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAA 365

Query: 362 ASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHE 399
              M+A+P   P SPM YG+PPGS   K D++++G DRRKRK E
Sbjct: 366 TLGMSAAPGAVP-SPMPYGMPPGSAFGKIDIRSSGSDRRKRKKE 403

[Close]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL
Match: A0A803P1V0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 2.4e-150
Identity = 289/367 (78.75%), Postives = 308/367 (83.92%), Query Frame = 0


Query: 44  EPSSANSKDLEDMKRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSR 103
           E      ++LEDMK+RLKE+EEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEE DSR
Sbjct: 3   EHDEQEHEELEDMKKRLKEMEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEVDSR 62

Query: 104 SVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLN 163
           S+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+A+QNALLLN
Sbjct: 63  SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLN 122

Query: 164 ESELHGRQLKVSAKRTNVPGMKQFRGRRPNSFGFRGRRPF-PSAPFPPSYGYG------- 223
           ESELHGRQLKVSAKRTNVPGMKQFRGRR     FR RRPF P++PF PSYGYG       
Sbjct: 123 ESELHGRQLKVSAKRTNVPGMKQFRGRRAGP--FRSRRPFAPASPFYPSYGYGRVPRFRR 182

Query: 224 ---PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQ 283
                ++YKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQQ
Sbjct: 183 PMRQKSIYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQ 242

Query: 284 PEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRP 343
           PEY+K+IMYPHCL+FLELLQNANFRNAMAHP +KEL HRQQFYFWKNYRNNRLKHILPR 
Sbjct: 243 PEYMKFIMYPHCLYFLELLQNANFRNAMAHPGSKELAHRQQFYFWKNYRNNRLKHILPRS 302

Query: 344 LLEPAAQ---PPPVSGPPQAAVSAPASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAG 397
           L EP A    PP  S PP   V+A    MAA+P G  LSPMQY  P GS + K DM+N G
Sbjct: 303 LPEPPAPTPVPPQQSMPP---VAASTIGMAAAP-GPVLSPMQYANPQGSSLPKTDMRNTG 362

[Close]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL
Match: A0A498JLW5 (RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 5.4e-150
Identity = 301/473 (63.64%), Postives = 337/473 (71.25%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIEEEA 67
           ++H+HEVYG +IP+D   D D+   +  AD+EDY+ +P   NSK+LEDMK+RLKEIEEEA
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSKELEDMKKRLKEIEEEA 62

Query: 68  GALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCG 127
           GALR+MQAKVEKEMGAVQD+SS SA+QAEKEE DSRS+YVGNVDYACTPEEVQQHFQSCG
Sbjct: 63  GALRDMQAKVEKEMGAVQDTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 122

Query: 128 TVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQF 187
           TVNRVTILTDKFG PKGFAYVEFVEV+A+QNALLLNESELHGRQLKVSAKRTNVPG+KQ+
Sbjct: 123 TVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGLKQY 182

Query: 188 RGRRPNSFGFRGRRPF-PSAPFPPSYGYG------------------------------- 247
           RGRRPN F FR RRPF P+APF PS+GYG                               
Sbjct: 183 RGRRPNPF-FRSRRPFIPAAPFYPSFGYGRVPRFRRPMSLRSEIFLLLPLPLEIEDEELL 242

Query: 248 ----------------------------------------------PTNVYKDPDDGRQR 307
                                                          +++YKDPDDGRQR
Sbjct: 243 GLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSSIYKDPDDGRQR 302

Query: 308 FLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLE 367
           FLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY ++IMYPHCLFFLE
Sbjct: 303 FLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRFIMYPHCLFFLE 362

Query: 368 LLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPA-AQPPPVSGPPQ 398
            LQNANFR AMAHP NKEL HRQQFYFWKNYRNNRLKHILPRPL EP  A PPP   PPQ
Sbjct: 363 QLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVPALPPP--APPQ 422

[Close]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL
Match: A0A6N2MJL7 (RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 1.9e-139
Identity = 281/428 (65.65%), Postives = 314/428 (73.36%), Query Frame = 0


Query: 2   DRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLK 61
           D   +  EH+HEVYGG+IPD+ EMDAD+DMSS RA+E++Y       NSKDLEDMK+RLK
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADIDMSS-RAEEDEY----QDPNSKDLEDMKKRLK 65

Query: 62  EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGN--VDYACTPEEV 121
           EIEEEA ALREMQAKVEKEMGAVQDS   SATQAEKEE DSRS+YVGN  VDY+CTPEEV
Sbjct: 66  EIEEEASALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVRVDYSCTPEEV 125

Query: 122 QQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRT 181
           QQHFQSCGTVNRVTILTDKFG PKGFAYVEFVE DAIQNALLLNESELHGRQLKVSAKRT
Sbjct: 126 QQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEADAIQNALLLNESELHGRQLKVSAKRT 185

Query: 182 NVPGMKQFRGRRPNSFGFRGRRPFPSAPFPPSYGYG------------------------ 241
           NVPGMK FRGRRP+++GFR RRPF   P+ P+YGYG                        
Sbjct: 186 NVPGMKLFRGRRPSAYGFRSRRPF--MPY-PAYGYGFNLNIISCAEGFQGSGDLCDTGHT 245

Query: 242 ---PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQ 301
                N       G+    L+L             YLAQNRY +DEAFIGYLKYLQYWQ+
Sbjct: 246 SEQKRNTRNCSTSGKLELSLQLR-----------KYLAQNRYFDDEAFIGYLKYLQYWQR 305

Query: 302 PEYIKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRP 361
           PEY+K+IMYPHCL+FLELLQN NFRNAMAHP NKEL HRQQF+FWKNYRNNRLKHILPRP
Sbjct: 306 PEYVKFIMYPHCLYFLELLQNVNFRNAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRP 365

Query: 362 LLEPAAQPPPVSGPPQAAVSAPASAMAASPA--GTPLSPMQYGVPPGSGISKNDMKNAGI 399
           L EP   PP  + PPQ      ++A    PA  G   SPM YG+PPGS   K+D++++G 
Sbjct: 366 LPEPVTAPPAPAPPPQPPAQPVSAATLGMPAASGAVPSPMPYGMPPGSAFGKSDIRSSGS 414

[Close]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL
Match: A0A0B0N1D6 (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_31994 PE=3 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 2.2e-135
Identity = 263/423 (62.17%), Postives = 311/423 (73.52%), Query Frame = 0


Query: 216 PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY 275
           P NVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY
Sbjct: 17  PKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 76

Query: 276 IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE 335
           +K+IMYPHCL+FLELLQNANFRNAMAHPANKE+ HRQQF+FWKNYRNNRLK ILP+P  E
Sbjct: 77  LKFIMYPHCLYFLELLQNANFRNAMAHPANKEVAHRQQFFFWKNYRNNRLKFILPKPPPE 136

Query: 336 PA---AQPPPVSGPPQAAVSAPASAMAASP--AGTPLSPMQYGVPPGSGISKNDMKNAGI 395
                A PPP S PPQ ++ A   AM  +P    +  SPM YG+P GS ++KNDM+N GI
Sbjct: 137 EVPTPAPPPPASAPPQQSLPASNIAMTTAPPAPASTHSPMPYGLPSGSALAKNDMRNTGI 196

Query: 396 DRRKRKHERNFIREGQNQSQNKRPLNIKGRPKELRNLKDMASIAISASFPRSCTSNHVSN 455
           DRRKRKH   F    +    +K+     G    LR    MASIAISAS  ++C+S+HV+ 
Sbjct: 197 DRRKRKHVVYFFPPQELLRTSKKQ---TGEKHYLRT--TMASIAISASLQKACSSHHVA- 256

Query: 456 KQQRRQARPTYSSMTKNPTPELIKTPYVGDR----DALDAPK-RHGNVASATDKLEEDTD 515
           K+Q  Q +P YS  TK    + +     G +    D  D P  +  N     DK     +
Sbjct: 257 KKQHAQTKPAYSLGTKQAI-DAVTIDVEGQKGFKIDEKDQPSPQINNSEGLEDKSANKLE 316

Query: 516 DMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFLELYPETATNHEPVLF 575
             +  + F+DERWKNGTWDLNMFV+NG+MDW+ VIVAEAKRRK+LE+YPET +N EPV F
Sbjct: 317 IESSARKFSDERWKNGTWDLNMFVRNGRMDWDSVIVAEAKRRKYLEMYPETCSNQEPVQF 376

Query: 576 RSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALTGIGIVGQSGNFISKAALFV 629
           RSSIIPWWAW  ++YLP+AELLNGRAAMIGFF AY+VD LTG+ ++GQ+GNFI K ALF+
Sbjct: 377 RSSIIPWWAWFMRTYLPEAELLNGRAAMIGFFSAYVVDGLTGMDLIGQTGNFICKTALFM 432

[Close]

BLAST of CmoCh16G002500 vs. NCBI nr
Match: XP_025014092.1 (polyadenylate-binding protein 2 isoform X1 [Ricinus communis])

HSP 1 Score: 612.5 bits (1578), Expect = 5.2e-171
Identity = 318/406 (78.33%), Postives = 352/406 (86.70%), Query Frame = 0


Query: 1   MDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVE----PSSANSKDLEDM 60
           MD++  ++E +HEVYG +IPD+ EMDAD+DMSS R +EE+ +VE      + NSKDLEDM
Sbjct: 1   MDQH-EHEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSKDLEDM 60

Query: 61  KRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTP 120
           K+RLKEIEEEAGALREMQAKVEKEMGAVQDSSS SATQAEKEE DSRSVYVGNVDYACTP
Sbjct: 61  KKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSGSATQAEKEEVDSRSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQFRGRRPNSF-GFRGRRPFPSAPFPPSYGYGPTNVYKDPDDGRQRFLLELE 240
           KRTN+PGMKQ+RGRRPN + GFR RRPF  APF P YGYGP ++YKDPDDG+QRFLLELE
Sbjct: 181 KRTNIPGMKQYRGRRPNPYSGFRSRRPFMPAPFSPPYGYGPKSIYKDPDDGKQRFLLELE 240

Query: 241 FVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNAN 300
           FVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQQPEYIK+IMYPHCLFFLELLQNA+
Sbjct: 241 FVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNAS 300

Query: 301 FRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVS---GPPQAAVS 360
           FRNAMAHP NKELTHRQQF+FWKNYRNNRLKHILPRPL EP   PP  +    P Q++  
Sbjct: 301 FRNAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEPVPTPPTSALPLPPLQSSPV 360

Query: 361 APASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHE 399
            P +    + + + LSPM YG+PPGS ++KNDM+N GIDRRKRK E
Sbjct: 361 PPTTVAMPAASASALSPMPYGMPPGSTLAKNDMRNTGIDRRKRKKE 404

[Close]

BLAST of CmoCh16G002500 vs. NCBI nr
Match: TKR68723.1 (polyadenylate-binding protein 1-like [Populus alba])

HSP 1 Score: 605.9 bits (1561), Expect = 4.8e-169
Identity = 314/404 (77.72%), Postives = 344/404 (85.15%), Query Frame = 0


Query: 2   DRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLK 61
           D   +  EH+HEVYGG+IPD+ EMDAD+DMSS RA+E++Y       NSKDLEDMK+RLK
Sbjct: 6   DHEEDEHEHEHEVYGGEIPDEGEMDADVDMSS-RAEEDEY----QDPNSKDLEDMKKRLK 65

Query: 62  EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQ 121
           EIEEEAGALREMQAKVEKEMGAVQDS   SATQAEKEE DSRS+YVGNVDY+CTPEEVQQ
Sbjct: 66  EIEEEAGALREMQAKVEKEMGAVQDSPGASATQAEKEEVDSRSIYVGNVDYSCTPEEVQQ 125

Query: 122 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 181
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV
Sbjct: 126 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 185

Query: 182 PGMKQFRGRRPNSFGFRGRRPFPSAPFPPSYGYG----PTNVYKDPDDGRQRFLLELEFV 241
           PGMKQFRGRRP+ +GFR RRPF +APF P+YGYG    P  +YKDPDDGRQRFL+ELEFV
Sbjct: 186 PGMKQFRGRRPSPYGFRSRRPFMAAPFYPAYGYGRVPRPKKIYKDPDDGRQRFLMELEFV 245

Query: 242 QCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNANFR 301
           QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY+K+IMYPHCL+FLELLQNANFR
Sbjct: 246 QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYVKFIMYPHCLYFLELLQNANFR 305

Query: 302 NAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVSGP---PQAAVSAP 361
           NAMAHP NKEL HRQQF+FWKNYRNNRLKHILPRPL EP   PP  + P   P   VSA 
Sbjct: 306 NAMAHPGNKELAHRQQFFFWKNYRNNRLKHILPRPLPEPVTAPPAPAQPPVQPAPPVSAA 365

Query: 362 ASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHE 399
              M+A+P   P SPM YG+PPGS   K D++++G DRRKRK E
Sbjct: 366 TLGMSAAPGAVP-SPMPYGMPPGSAFGKIDIRSSGSDRRKRKKE 403

[Close]

BLAST of CmoCh16G002500 vs. NCBI nr
Match: XP_025014094.1 (polyadenylate-binding protein 2 isoform X2 [Ricinus communis])

HSP 1 Score: 602.4 bits (1552), Expect = 5.3e-168
Identity = 316/406 (77.83%), Postives = 350/406 (86.21%), Query Frame = 0


Query: 1   MDRNFNYDEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVE----PSSANSKDLEDM 60
           MD++  ++E +HEVYG +IPD+ EMDAD+DMSS R +EE+ +VE      + NSKDLEDM
Sbjct: 1   MDQH-EHEEQEHEVYGSEIPDEGEMDADIDMSS-RPEEEEEEVEEEYDEQNPNSKDLEDM 60

Query: 61  KRRLKEIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTP 120
           K+RLKEIEEEAGALREMQAKVEKEMGAVQDSSS SATQAEKEE DSRSVYVGNVDYACTP
Sbjct: 61  KKRLKEIEEEAGALREMQAKVEKEMGAVQDSSSGSATQAEKEEVDSRSVYVGNVDYACTP 120

Query: 121 EEVQQHFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSA 180
           EEVQQHFQSCGTVNRVTILTDKFG PKGFAYVEFVEVDA+QNALLLNESELHGRQLKVSA
Sbjct: 121 EEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSA 180

Query: 181 KRTNVPGMKQFRGRRPNSF-GFRGRRPFPSAPFPPSYGYGPTNVYKDPDDGRQRFLLELE 240
           KRTN+PGMKQ+RGRRPN + GFR RRPF  APF P   YGP ++YKDPDDG+QRFLLELE
Sbjct: 181 KRTNIPGMKQYRGRRPNPYSGFRSRRPFMPAPFSPP--YGPKSIYKDPDDGKQRFLLELE 240

Query: 241 FVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLELLQNAN 300
           FVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQQPEYIK+IMYPHCLFFLELLQNA+
Sbjct: 241 FVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNAS 300

Query: 301 FRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPAAQPPPVS---GPPQAAVS 360
           FRNAMAHP NKELTHRQQF+FWKNYRNNRLKHILPRPL EP   PP  +    P Q++  
Sbjct: 301 FRNAMAHPGNKELTHRQQFFFWKNYRNNRLKHILPRPLPEPVPTPPTSALPLPPLQSSPV 360

Query: 361 APASAMAASPAGTPLSPMQYGVPPGSGISKNDMKNAGIDRRKRKHE 399
            P +    + + + LSPM YG+PPGS ++KNDM+N GIDRRKRK E
Sbjct: 361 PPTTVAMPAASASALSPMPYGMPPGSTLAKNDMRNTGIDRRKRKKE 402

[Close]

BLAST of CmoCh16G002500 vs. NCBI nr
Match: KAG6576837.1 (Mediator of RNA polymerase II transcription subunit 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 592.8 bits (1527), Expect = 4.2e-165
Identity = 329/444 (74.10%), Postives = 338/444 (76.13%), Query Frame = 0


Query: 216 PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY 275
           PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY
Sbjct: 18  PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY 77

Query: 276 IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE 335
           IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE
Sbjct: 78  IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE 137

Query: 336 PAAQPPPVSGPPQAAVSAPASAMAASPA----------GTPLSPMQYGVPPGSGISKNDM 395
           PAAQPPPVSGPPQAAVSAPA AMAASPA              +  +Y V  G  I+ +++
Sbjct: 138 PAAQPPPVSGPPQAAVSAPAPAMAASPAERYEECRNRSTKEKTRKKYAVVGGCLIAAHEV 197

Query: 396 KNAGIDR------------RKRKH----ERNFIREG----QNQSQNKRPLNIKGRPKELR 455
               +                + H      NFIREG    QNQSQNKRPLNIKGRPKELR
Sbjct: 198 IFHKLKTFQELPITWDHAYMSKDHSFWLNSNFIREGQNQSQNQSQNKRPLNIKGRPKELR 257

Query: 456 NLKDMASIAISASFPRSCTSNHVSNKQQR-RQARPTYSSMTKNPTPELIKTPYVGDRDAL 515
           NLKDMASIAISASFPRSCTSNHVSNKQQ  RQ RPTYSSM KNPTPELIKTP VGDRDA 
Sbjct: 258 NLKDMASIAISASFPRSCTSNHVSNKQQHARQTRPTYSSMMKNPTPELIKTPNVGDRDAF 317

Query: 516 DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEA 575
           DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA  
Sbjct: 318 DAPKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVA-- 377

Query: 576 KRRKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDA 629
                                                       GRAAMIGFFMAYLVDA
Sbjct: 378 --------------------------------------------GRAAMIGFFMAYLVDA 415

[Close]

BLAST of CmoCh16G002500 vs. NCBI nr
Match: RXH94803.1 (hypothetical protein DVH24_024487 [Malus domestica])

HSP 1 Score: 541.6 bits (1394), Expect = 1.1e-149
Identity = 301/473 (63.64%), Postives = 337/473 (71.25%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIEEEA 67
           ++H+HEVYG +IP+D   D D+   +  AD+EDY+ +P   NSK+LEDMK+RLKEIEEEA
Sbjct: 3   EQHEHEVYGAEIPNDDGEDVDMSSRADGADDEDYNDDP---NSKELEDMKKRLKEIEEEA 62

Query: 68  GALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCG 127
           GALR+MQAKVEKEMGAVQD+SS SA+QAEKEE DSRS+YVGNVDYACTPEEVQQHFQSCG
Sbjct: 63  GALRDMQAKVEKEMGAVQDTSSGSASQAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 122

Query: 128 TVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQF 187
           TVNRVTILTDKFG PKGFAYVEFVEV+A+QNALLLNESELHGRQLKVSAKRTNVPG+KQ+
Sbjct: 123 TVNRVTILTDKFGQPKGFAYVEFVEVEAVQNALLLNESELHGRQLKVSAKRTNVPGLKQY 182

Query: 188 RGRRPNSFGFRGRRPF-PSAPFPPSYGYG------------------------------- 247
           RGRRPN F FR RRPF P+APF PS+GYG                               
Sbjct: 183 RGRRPNPF-FRSRRPFIPAAPFYPSFGYGRVPRFRRPMSLRSEIFLLLPLPLEIEDEELL 242

Query: 248 ----------------------------------------------PTNVYKDPDDGRQR 307
                                                          +++YKDPDDGRQR
Sbjct: 243 GLTQWEFFDVSDADPKENHHHCSDFEQTGKGKLVVADPIPAHCHRRTSSIYKDPDDGRQR 302

Query: 308 FLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEYIKYIMYPHCLFFLE 367
           FLLELEFVQCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY ++IMYPHCLFFLE
Sbjct: 303 FLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYTRFIMYPHCLFFLE 362

Query: 368 LLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLEPA-AQPPPVSGPPQ 398
            LQNANFR AMAHP NKEL HRQQFYFWKNYRNNRLKHILPRPL EP  A PPP   PPQ
Sbjct: 363 QLQNANFRAAMAHPGNKELAHRQQFYFWKNYRNNRLKHILPRPLPEPVPALPPP--APPQ 422

[Close]

BLAST of CmoCh16G002500 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-71
Identity = 151/224 (67.41%), Postives = 175/224 (78.12%), Query Frame = 0


Query: 7   YDEHDHEVYGGDIPDDAEMDADLDMSSGRADEE-----DYDVEPSSANSKDLEDMKRRLK 66
           +DE +HEVYGG+IP++ E + D +       EE     D ++EP S +S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGS-SSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQ 126
           EIEEEAGALREMQAK EK+MGA QD S    + AEKEE DSRS+YVGNVDYACTPEEVQQ
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGNVDYACTPEEVQQ 123

Query: 127 HFQSCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNV 186
           HFQSCGTVNRVTILTDKFG PKGFAYVEFVEV+A+QN+L+LNESELHGRQ+KVSAKRTNV
Sbjct: 124 HFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNV 183

Query: 187 PGMKQFRGR-RPNSFGFRGRRPF-PSAPFPPSYGYGPTNVYKDP 224
           PGM+QFRGR RP    FR  R F P  PF P Y YG    ++ P
Sbjct: 184 PGMRQFRGRGRP----FRPMRGFMPGVPFYPPYAYGRVPRFRRP 221

[Close]

BLAST of CmoCh16G002500 vs. TAIR 10
Match: AT5G19910.1 (SOH1 family protein )

HSP 1 Score: 265.0 bits (676), Expect = 1.9e-70
Identity = 137/184 (74.46%), Postives = 149/184 (80.98%), Query Frame = 0


Query: 216 PTNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYLEDEAFIGYLKYLQYWQQPEY 275
           P N YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRY EDEAFIGYLKYLQYWQ+PEY
Sbjct: 18  PKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEY 77

Query: 276 IKYIMYPHCLFFLELLQNANFRNAMAHPANKELTHRQQFYFWKNYRNNRLKHILPRPLLE 335
           IK+IMYPHCL+FLELLQN NFR AMAHPANKEL HRQQFY+WKNYRNNRLKHILPRPL E
Sbjct: 78  IKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPE 137

Query: 336 PAAQPPPVSGPPQAAVSAPASAMAASPAGTPLSPMQYGVPPGSGISKNDMKN---AGIDR 395
           P    PPV+ P  +   AP++  A SPA   LSPMQY     + +SKND +N    GIDR
Sbjct: 138 PVPPQPPVA-PSTSLPPAPSATAALSPA---LSPMQY----NNMLSKNDTRNMGATGIDR 193

Query: 396 RKRK 397
           RKRK
Sbjct: 198 RKRK 193

[Close]

BLAST of CmoCh16G002500 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 5.1e-68
Identity = 144/218 (66.06%), Postives = 172/218 (78.90%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDADLDMSSGRADEEDYDVEPSSANS-KDLEDMKRRLKEIEEE 67
           +E +HEVYGG+IPD  EMD D++     A   D D+  +  ++ K+L++MK+RLKE+E+E
Sbjct: 2   EEEEHEVYGGEIPDVGEMDGDME-----ALNPDLDMAAADDDAVKELDEMKKRLKEMEDE 61

Query: 68  AGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSC 127
           A ALREMQAKVEKEMGA QD +S +A QA KEE D+RSV+VGNVDYACTPEEVQQHFQ+C
Sbjct: 62  AAALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTC 121

Query: 128 GTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQ 187
           GTV+RVTILTDKFG PKGFAYVEFVEV+A+Q AL LNESELHGRQLKV  KRTNVPG+KQ
Sbjct: 122 GTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQ 181

Query: 188 FRGRRPNSF-GFRGRRPFPSAPFPPSYGYGPTNVYKDP 224
           FRGRR N + G+R RRPF S      YGYG    ++ P
Sbjct: 182 FRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRP 213

[Close]

BLAST of CmoCh16G002500 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 251.1 bits (640), Expect = 2.8e-66
Identity = 149/261 (57.09%), Postives = 176/261 (67.43%), Query Frame = 0


Query: 7   YDEHDHEVYGGDIPDDAEMDADLDMSSGRADEE-----DYDVEPSSANSKDLEDMKRRLK 66
           +DE +HEVYGG+IP++ E + D +       EE     D ++EP S +S+DLEDMK+R+K
Sbjct: 4   HDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGS-SSRDLEDMKKRIK 63

Query: 67  EIEEEAGALREMQAKVEKEMGAVQ------------------------------------ 126
           EIEEEAGALREMQAK EK+MGA Q                                    
Sbjct: 64  EIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYE 123

Query: 127 -DSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGHPKG 186
            +  ++  + AEKEE DSRS+YVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFG PKG
Sbjct: 124 KEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKG 183

Query: 187 FAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGMKQFRGR-RPNSFGFRGRRPF 224
           FAYVEFVEV+A+QN+L+LNESELHGRQ+KVSAKRTNVPGM+QFRGR RP    FR  R F
Sbjct: 184 FAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRP----FRPMRGF 243

[Close]

BLAST of CmoCh16G002500 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-65
Identity = 143/220 (65.00%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 8   DEHDHEVYGGDIPDDAEMDA---DLDMSSGRADEEDYDVEPSSANSKDLEDMKRRLKEIE 67
           +E +HEVYGG+IP+  + D    D+DMS+  ADE+            +L +MKRRLKE+E
Sbjct: 2   EEEEHEVYGGEIPEVGDTDVPDPDIDMSA--ADEDAV---------TELAEMKRRLKEME 61

Query: 68  EEAGALREMQAKVEKEMGAVQDSSSTSATQAEKEEADSRSVYVGNVDYACTPEEVQQHFQ 127
           EEA ALREMQAKVEKEMGA QD +S +A Q  KEE D+RSVYVGNVDYACTPEEVQ HFQ
Sbjct: 62  EEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQ 121

Query: 128 SCGTVNRVTILTDKFGHPKGFAYVEFVEVDAIQNALLLNESELHGRQLKVSAKRTNVPGM 187
           +CGTVNRVTIL DKFG PKGFAYVEFVEV+A+Q AL LNESELHGRQLKVS KRTNVPGM
Sbjct: 122 TCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGM 181

Query: 188 KQFR-GRRPNSFGFRGRRPFPSAPFPPSYGYGPTNVYKDP 224
           KQ+  GR   S G+R RRPF    F   YGYG    ++ P
Sbjct: 182 KQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRP 210

The following BLAST results are available for this feature:

BLAST of CmoCh16G002500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VI4	2.4e-70	67.41	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
Q8VYB1	2.7e-69	74.46	Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana O...	[more]
Q9FJN9	7.2e-67	66.06	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	1.5e-64	65.00	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q9SYX1	1.4e-41	69.57	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]

BLAST of CmoCh16G002500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5MIM5	2.3e-169	77.72	Polyadenylate-binding protein 1-like OS=Populus alba OX=43335 GN=D5086_000030663...	[more]
A0A803P1V0	2.4e-150	78.75	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A498JLW5	5.4e-150	63.64	RRM domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024487 PE=3 SV...	[more]
A0A6N2MJL7	1.9e-139	65.65	RRM domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS379645 PE...	[more]
A0A0B0N1D6	2.2e-135	62.17	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_31994 PE=3 SV=1	[more]

BLAST of CmoCh16G002500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025014092.1	5.2e-171	78.33	polyadenylate-binding protein 2 isoform X1 [Ricinus communis]	[more]
TKR68723.1	4.8e-169	77.72	polyadenylate-binding protein 1-like [Populus alba]	[more]
XP_025014094.1	5.3e-168	77.83	polyadenylate-binding protein 2 isoform X2 [Ricinus communis]	[more]
KAG6576837.1	4.2e-165	74.10	Mediator of RNA polymerase II transcription subunit 31, partial [Cucurbita argyr...	[more]
RXH94803.1	1.1e-149	63.64	hypothetical protein DVH24_024487 [Malus domestica]	[more]

BLAST of CmoCh16G002500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51120.1	1.7e-71	67.41	polyadenylate-binding protein 1	[more]
AT5G19910.1	1.9e-70	74.46	SOH1 family protein	[more]
AT5G65260.1	5.1e-68	66.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.2	2.8e-66	57.09	polyadenylate-binding protein 1	[more]
AT5G10350.1	1.1e-65	65.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 725..773
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..513
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 386..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..470
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 336..418
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..513
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR23236:SF75	POLYADENYLATE-BINDING PROTEIN 1-LIKE	coord: 7..224
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 7..224
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 104..175 e-value: 3.35109E-45 score: 153.986
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 564..618
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 104..175 e-value: 3.0E-21 score: 86.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 105..173 e-value: 2.6E-15 score: 56.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 103..179 score: 16.61952
IPR038089	Mediator of RNA polymerase II, subunit Med31 superfamily	GENE3D	1.10.10.1340	Mediator of RNA polymerase II, submodule Med31 (Soh1)	coord: 216..317 e-value: 1.3E-39 score: 136.1
IPR008831	Mediator complex, subunit Med31	PFAM	PF05669	Med31	coord: 228..320 e-value: 6.1E-34 score: 115.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 43..176 e-value: 3.2E-27 score: 97.2
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002500.1	CmoCh16G002500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0003676	nucleic acid binding