CmoCh16G002470 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G002470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 1088807 .. 1090486 (+)
RNA-Seq ExpressionCmoCh16G002470
SyntenyCmoCh16G002470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAACTCTTTTTTTTTTTTTTTTTTTTCTTTTTTGTCTTCCTTTCTTCCTTATGCAACCTACTTTTATTGTAATTAGTATATTATCACCTTTATAATAAGATAAACTTGATTCAAGCATCATCAGTCTGAAAGCTGAAGATTAATCCTGGATCTTGAGTGTGTCGATGAAGCTCTTTCCTTCTGCAAGATCGTTGCTGGAGAGAAATTTGAGAAAATCATTGAAGCTGCTCTCTTTATACTTAATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGTAGACTGGAAATGGAGATTCTTGTTCTCTCAGAATTGACAATGGCTCTGTGGACGACACCCTTGTAAAGCCCATTGCTTAGAACCTCCACATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGGTATGTTGGTCTTAAACCCAAGCTTTCAGTTATGGCTTCCTCTATCTCTAAGCTTACTTTTCTCACCTCCTTGGTGTATTGTCCCATCTTTTCCCTGAAACGGTCATACACATATATATATATATAATATGTATATATATACATGTAAAACACAAGGACATGTCTCTGAAGAACGTATGCACCTAGGATCTTATAAAATTTCAACTCATATGTGGTTTTCTCAAAGTAAGAGATTAAATAATAGTTTTTTTTGGGGGGGATGATTTTTATATTGATATTTTAATCAGAGATGTCCATATTTTTGTCGGTAAGTAGTGCTTTCTGTCCTGTTTTGATGGTCATTTATTGGTGAGTGCATGTCAAGTCCTATATTTATGGTTCATTGTAGAAGAATGCTCAAGTATGCTGAGTATGCATAAAAAGAGTCCAAACTTTTAGACCATACTCAATGTTAGCATAATTAAAAATAGCATTGTTAGCTGAAGTTCTGGTTCATAGGCGTCAGCATATGCATAGCGGTGATCTCTTTGGCGGTCCAATGGTTTTATTGTATCTTTCTGTTGAATTTCATTGTACAGCCTTCACATGTAAGTAAATTTTGCATGGTAATCAGGAAAAGAAAAAAAATGGAAATTGGGTCAGAAGTGGAGATGGAGAATTAAAATATTGAGTTACCTATAAGTATGTGGATTGGTGGGCCAGGAGTCTACCCAATCTTCCAATGGATGAGCGTAGTGTTTGAGGAAAACTCTCCAAAACTTTATTTTGTCTACTCCATCTTTCAAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTAAGTTAAAGAACTCCCTGGCTTGGTTTAGTGCTTCCTCCATCACCGTTTTGCTGATTCCATGATTGATTATCTGAAGAAAAACAAATAGAAGTTAAGAGCTAGCTAATATAAAAGAGGTAGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA

mRNA sequence

AAAAACTCTTTTTTTTTTTTTTTTTTTTCTTTTTTGTCTTCCTTTCTTCCTTATGCAACCTACTTTTATTGTAATTAGTATATTATCACCTTTATAATAAGATAAACTTGATTCAAGCATCATCAGTCTGAAAGCTGAAGATTAATCCTGGATCTTGAGTGTGTCGATGAAGCTCTTTCCTTCTGCAAGATCGTTGCTGGAGAGAAATTTGAGAAAATCATTGAAGCTGCTCTCTTTATACTTAATAGGATTTTGTTCATCCACAAGCTCTTCTGCAGGCTTCATTTTCTCGTCCATTCCCAAGCTGTGTAGACTGGAAATGGAGATTCTTGTTCTCTCAGAATTGACAATGGCTCTGTGGACGACACCCTTGTAAAGCCCATTGCTTAGAACCTCCACATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA

Coding sequence (CDS)

ATGATCGCCCACATGGACCTGCAGACTGCCATCAACATTAGGAACCATCTTCCATTTCCCATCAGCCCGGTCCATGATTTCAAGTCCCTGGCTGCTTTGCAGAATTGTGGTTATGCAGCTGTAGTCTGTATGTGGTGGCAACCCAAGTGCGACCCCTGGCTGTGGACATGGCGGGTAGCAGTTTACTGCCACTACCTGGACTCCTTCAGCCATTTTGCTGCTGAGCTTGTTCCATACCTGACTGCTTTGCTAACATCATCTGACTTATACTTCATCTTCTCCTTTAGTGGTTGCTTGAAACTTTACCTGAAAGAAGCCGAGGCTAATGCAAGCTTTTCTGAGCGCTTCAATGGTGAGGGACCTTTGAGCTGA

Protein sequence

MIAHMDLQTAINIRNHLPFPISPVHDFKSLAALQNCGYAAVVCMWWQPKCDPWLWTWRVAVYCHYLDSFSHFAAELVPYLTALLTSSDLYFIFSFSGCLKLYLKEAEANASFSERFNGEGPLS
Homology
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BLAST of CmoCh16G002470 vs. ExPASy TrEMBL
Match: A0A0A0KXN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025090 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.6e-32
Identity = 61/76 (80.26%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 1   MIAHMDLQTAINIRNHLPFPISPVHDFKSLAALQNCGYAAVVCMWWQPKCDPWLWTWRVA 60
           MIAHMDLQ+ IN+ +HLP PIS VHDFK+LAAL+NCGYA VVCMWWQP+CDPWLWTW +A
Sbjct: 49  MIAHMDLQSTINLWDHLPCPISWVHDFKALAALKNCGYATVVCMWWQPECDPWLWTWGIA 108

Query: 61  VYCHYLDSFSHFAAEL 77
           +YCHYLDSFSHFAAE+
Sbjct: 109 IYCHYLDSFSHFAAEV 124

The following BLAST results are available for this feature:
BLAST of CmoCh16G002470 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXN73.6e-3280.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025090 PE=4 SV=1[more]
BLAST of CmoCh16G002470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh16G002470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G002470.1CmoCh16G002470.1mRNA