CmoCh16G002460 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	pre-mRNA-splicing factor CWC25 homolog
Location	Cmo_Chr16: 1086052 .. 1086966 (-)
RNA-Seq Expression	CmoCh16G002460
Synteny	CmoCh16G002460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCCTCGGTCAAGATTACTATTGGGCCATGAAATTGCGCGCGAGAAGAAGTGGCGGCGGCGACCGTCCGATTCCCAATCAGAAAATCGGATTCTTCCCCACAAAACCACCGCGCCGGTGGCGGAAAATCTGATCCTCAGTTTGAAACTTGATTCGAGACATGGCATTGAAGTTCTTGAACAAGAAAGGATGGCACACTGGCAGTCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGTCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGTATGTTTTATCTTCTATATTGTTGTTAACAGTTTTAATTATGCATTTGATTCATAGTCTGTAAGTTTCAAATCCGATTCGATCTCTGAATAGATGAGGATTGAAAACGTTGCGTAGATTAGGGTTAGCGCCAAGGCGATGGTTAGGGCTTAAGTAGTTCGATTGGTTTGAGCAATATTTAAATTTTGGACTATATGGCGTTCCAGGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCCCTGAACCATCTAGTTCCAAGGTACTGTTGCACTCGCTGTTAATTTGTGTGCTTTGGCAATTTGTGTGCTTTGGCTATCTCTTCGTGGTGCTCAATTATGATTGTTGTTTCCTTGTGTTGTTTCTGCAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAATAA

mRNA sequence

GGGCCTCGGTCAAGATTACTATTGGGCCATGAAATTGCGCGCGAGAAGAAGTGGCGGCGGCGACCGTCCGATTCCCAATCAGAAAATCGGATTCTTCCCCACAAAACCACCGCGCCGGTGGCGGAAAATCTGATCCTCAGTTTGAAACTTGATTCGAGACATGGCATTGAAGTTCTTGAACAAGAAAGGATGGCACACTGGCAGTCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGTCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCCCTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAATAA

Coding sequence (CDS)

ATGGCATTGAAGTTCTTGAACAAGAAAGGATGGCACACTGGCAGTCTCCGGAATATAGAGAACGTGTGGAAGGCGGAGCAAAAGCATGAGGCCGAGCAGAAGAAGTTGGACGAACTCCGCAAGCAAATCCATGAGGAGAAGGAGCGTCAAGAGTTTCGTCTTCTCCAAGAACAGGCCGGCCTCGTTCCGAAGCAGGAAAGATTGGATTTTCTTTATGAATCGGGTTTGGCAGTCGGGAAAGGTAGCAATTCCGATGGATTTAAGAGCCTCGAAACTCTACCTACTACTACATCTACTGCTGCGGCTGCCCCTGAACCATCTAGTTCCAAGGAAGCCGCTGCCCCCGGTGCTCTGTTTGAGGATAAGCCTCATTCTGCAAATGACGCATGGAGGAAGCTCCATTCTGATCCCTTGCTCATCATTCGGCAGCGTGAGCAATAA

Protein sequence

MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFEDKPHSANDAWRKLHSDPLLIIRQREQ

Homology

[Close]

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot
Match: Q9NXE8 (Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens OX=9606 GN=CWC25 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.1e-14
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQE 67
           KK WH  +LRN+E VWKAEQKHEAE+KK++EL++++ EE+ R+E +   E  G V  K+E
Sbjct: 9   KKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEE 68

Query: 68  RLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPS---SSKEAAAPGALFEDKP 127
           +LD++Y+     G G   +  + L   P          E     SS+    PG++F   P
Sbjct: 69  KLDWMYQ-----GPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIF--AP 128

Query: 128 HSAN---DAWRKLHSDPLLIIRQREQ 147
             AN   D   K+  DPL IIR++E+
Sbjct: 129 SGANSLLDMASKIREDPLFIIRKKEE 147

[Close]

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot
Match: Q9DBF7 (Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus OX=10090 GN=Cwc25 PE=2 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.6e-14
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = 0


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLV-PKQE 67
           KK WH  +LRN+E VWKAEQKHEAE+KK++EL++++ EE+ R+E +   E  G V  K+E
Sbjct: 9   KKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDVGAVKKKEE 68

Query: 68  RLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPS---SSKEAAAPGALFEDKP 127
           +LD++Y+     G G   +  + L   P          E     SS+    PG++F   P
Sbjct: 69  KLDWMYQ-----GPGGMVNRDEYLLGRPIDKYVFEKMEEREAGCSSETGLLPGSIF--AP 128

Query: 128 HSAN---DAWRKLHSDPLLIIRQREQ 147
             AN   D   K+  DPL IIR++E+
Sbjct: 129 SGANSLLDMASKIREDPLFIIRKKEE 147

[Close]

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot
Match: Q4P6I3 (Pre-mRNA-splicing factor CWC25 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=CWC25 PE=3 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-09
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 0


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQER 67
           KK WH     N E VWK E++   E+KKL+ELR++  +E+E Q+ + LQE+AG   + +R
Sbjct: 9   KKSWHPLLQVNQERVWKREKEALEERKKLEELRREREQEREMQQLQRLQEEAGGKKRIDR 68

Query: 68  LDFLYESGLAVGKGSNSD------GFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFED 127
           +D++Y +    G GS ++      G K ++ L           E     +      +   
Sbjct: 69  VDWMYATPATTGSGSAAEMEDYLLGKKRVDKL-------LQGEENKEMSKTTQKSLVSLQ 128

Query: 128 KPHSANDAWRKLHSDPLLIIRQREQ 147
             +SA D   K+  DP+L I+Q+EQ
Sbjct: 129 NANSARDLAAKIREDPMLAIKQQEQ 146

[Close]

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot
Match: Q5B0I1 (Pre-mRNA-splicing factor cwc25 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=cwc25 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-08
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = 0


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQER 67
           KK WH   LRN E VW  E++   E+K++D+L+++  EE++ QE + LQE AG   + +R
Sbjct: 8   KKSWHPSLLRNQERVWAEEKRALEERKRIDQLKRERDEERQIQELQRLQESAGGTRQLQR 67

Query: 68  LDFLYE--SGLAVGKGSNSDGF----KSLETLPTTTSTAAAAPEPSSSKEAAAPGALFED 127
           +D++Y+  S  +       +G+    + ++ +      +    + +++   AA G     
Sbjct: 68  VDWMYQEPSSASGHYAEEMEGYLLGKRRIDGILLKNDESKKLEKGAATGPGAAAG--LPP 127

Query: 128 KPHSANDAWRKLHSDPLLIIRQREQ 147
             H+  D   K+ +DPLL IR+REQ
Sbjct: 128 VVHNTRDTMAKVMADPLLEIRKREQ 150

[Close]

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot
Match: Q9Y805 (Pre-mRNA-splicing factor cwf25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf25 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-08
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 0


Query: 8   KKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGLVPKQER 67
           KK WH   +RN E VWK EQ H+ E K++++LR++I EE++  E   LQE AG   +++R
Sbjct: 9   KKSWHPLLMRNQEKVWKDEQAHKEEMKRVEQLRREIEEERQLLELHRLQEAAGGKKRKDR 68

Query: 68  LDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALF--EDKPHS 127
           ++++Y   +    G N D  +  E L           +    +  +     F      +S
Sbjct: 69  VEWMY--AVPNTNGPNRDSSEMEEYLLGRRRLDDLLKDKIEDQNNSLEKTEFIALQNANS 128

Query: 128 ANDAWRKLHSDPLLIIRQREQ 147
             D   KL  DPLL I+Q+EQ
Sbjct: 129 LQDTQAKLRLDPLLAIKQQEQ 147

[Close]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL
Match: A0A6J1E963 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430542 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 146

[Close]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL
Match: A0A5A7TSZ0 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00360 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STAAAA EPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLP-SSSTAAAATEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL
Match: A0A1S3BY15 (pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.0e-65
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STAAAA EPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLP-SSSTAAAATEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL
Match: A0A0A0KU62 (Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.6e-65
Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STAAAA EPSSSKEAA PGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLP-SSSTAAAATEPSSSKEAAVPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSAND WRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDTWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL
Match: A0A6J1CHZ1 (pre-mRNA-splicing factor CWC25 homolog OS=Momordica charantia OX=3673 GN=LOC111011671 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.3e-64
Identity = 135/146 (92.47%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIQEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGKGS+SDGFKSLETLP +TS   A  EPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKGSSSDGFKSLETLP-STSAIVATTEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           +KPHSAND+WRKLHSDPLLIIRQREQ
Sbjct: 121 NKPHSANDSWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. NCBI nr
Match: XP_022922575.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 146

[Close]

BLAST of CmoCh16G002460 vs. NCBI nr
Match: KAG6576831.1 (Pre-mRNA-splicing factor CWC25-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.8 bits (704), Expect = 2.2e-70
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTG+LRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGNLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAA EPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAATEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 146

[Close]

BLAST of CmoCh16G002460 vs. NCBI nr
Match: XP_023551879.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 2   ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGL 61
           ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGL
Sbjct: 7   ALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAGL 66

Query: 62  VPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFED 121
           VPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAA EPSSSKEAAAPGALFED
Sbjct: 67  VPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAATEPSSSKEAAAPGALFED 126

Query: 122 KPHSANDAWRKLHSDPLLIIRQREQ 147
           KPHSAND+WRKLHSDPLLIIRQREQ
Sbjct: 127 KPHSANDSWRKLHSDPLLIIRQREQ 151

[Close]

BLAST of CmoCh16G002460 vs. NCBI nr
Match: XP_008453851.1 (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK16902.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.1e-65
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQILEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STAAAA EPSSSKEAAAPGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLP-SSSTAAAATEPSSSKEAAAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. NCBI nr
Match: XP_038896474.1 (pre-mRNA-splicing factor CWC25 homolog [Benincasa hispida])

HSP 1 Score: 258.8 bits (660), Expect = 2.7e-65
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQI EEKERQEFRLLQEQAG
Sbjct: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIQEEKERQEFRLLQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           LVPKQERLDFLYESGLAVGK S+SDGFKSLETLP ++STAAAA EPSSSKEAA PGALFE
Sbjct: 61  LVPKQERLDFLYESGLAVGKASSSDGFKSLETLP-SSSTAAAATEPSSSKEAAVPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           DKPHSANDAWRKLHSDPLLIIRQREQ
Sbjct: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 145

[Close]

BLAST of CmoCh16G002460 vs. TAIR 10
Match: AT2G44200.1 (CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor )

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-47
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           M +KFLNKKGWHTGSLRNIE VWKAEQK EAEQKKL+ELR QI +E+ER EFR LQEQAG
Sbjct: 1   MGMKFLNKKGWHTGSLRNIETVWKAEQKQEAEQKKLEELRLQILQERERSEFRALQEQAG 60

Query: 61  LVPKQERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALFE 120
           L+P+QERL+FLY+SGLAVGKGS S    S +      + + A    S   + +APGALFE
Sbjct: 61  LIPRQERLEFLYDSGLAVGKGSASGSGVSFQKEEQPLAKSEAGSSASEKPDQSAPGALFE 120

Query: 121 DKPHSANDAWRKLHSDPLLIIRQREQ 147
           +K  SAND+WRKLHSDPLL+IRQREQ
Sbjct: 121 EKAQSANDSWRKLHSDPLLLIRQREQ 146

[Close]

BLAST of CmoCh16G002460 vs. TAIR 10
Match: AT2G44195.1 (CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor )

HSP 1 Score: 138.7 bits (348), Expect = 3.8e-33
Identity = 82/149 (55.03%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 1   MALKFLNKKGWHTGSLRNIENVWKAEQKHEAEQKKLDELRKQIHEEKERQEFRLLQEQAG 60
           MALKFLNKKGWHTGS+RN+E VWKAEQKHEAEQ+K++          ER EFR +QEQAG
Sbjct: 1   MALKFLNKKGWHTGSIRNVEKVWKAEQKHEAEQEKIE----------ERSEFRAIQEQAG 60

Query: 61  LVPKQ-ERLDFLYESGLAVGKGSNSDGFKSLETLPTTTSTAAAAPEPSSSKEAAAPGALF 120
           LVP++ ERL+FLY+  LAV K + S           ++              A  PGALF
Sbjct: 61  LVPRRPERLEFLYDPELAVAKQNVS-----------SSRHGVLFQNQDQRARATIPGALF 120

Query: 121 --EDKPHSANDAWRKLHSDPLLIIRQREQ 147
             +DK HSAND+WRK HSDPLL+IRQ+EQ
Sbjct: 121 DDDDKRHSANDSWRKFHSDPLLLIRQKEQ 128

The following BLAST results are available for this feature:

BLAST of CmoCh16G002460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NXE8	5.1e-14	39.04	Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens OX=9606 GN=CWC25 PE=1 SV=...	[more]
Q9DBF7	6.6e-14	39.04	Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus OX=10090 GN=Cwc25 PE=2 SV...	[more]
Q4P6I3	6.4e-09	31.72	Pre-mRNA-splicing factor CWC25 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=23...	[more]
Q5B0I1	7.1e-08	30.34	Pre-mRNA-splicing factor cwc25 OS=Emericella nidulans (strain FGSC A4 / ATCC 381...	[more]
Q9Y805	7.1e-08	32.62	Pre-mRNA-splicing factor cwf25 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CmoCh16G002460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E963	5.6e-72	100.00	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschat...	[more]
A0A5A7TSZ0	1.0e-65	95.21	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BY15	1.0e-65	95.21	pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 P...	[more]
A0A0A0KU62	8.6e-65	93.84	Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 ...	[more]
A0A6J1CHZ1	3.3e-64	92.47	pre-mRNA-splicing factor CWC25 homolog OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of CmoCh16G002460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922575.1	1.1e-71	100.00	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata]	[more]
KAG6576831.1	2.2e-70	98.63	Pre-mRNA-splicing factor CWC25-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023551879.1	8.2e-70	98.62	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita ...	[more]
XP_008453851.1	2.1e-65	95.21	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 p...	[more]
XP_038896474.1	2.7e-65	94.52	pre-mRNA-splicing factor CWC25 homolog [Benincasa hispida]	[more]

BLAST of CmoCh16G002460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44200.1	2.1e-47	67.81	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor	[more]
AT2G44195.1	3.8e-33	55.03	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..133
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 1..146
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	SMART	SM01083	Cir_N_3	coord: 10..46 e-value: 2.3E-12 score: 57.1
IPR019339	CBF1-interacting co-repressor CIR, N-terminal domain	PFAM	PF10197	Cir_N	coord: 11..46 e-value: 2.7E-15 score: 56.3
IPR022209	Pre-mRNA splicing factor	PFAM	PF12542	CWC25	coord: 64..146 e-value: 1.3E-8 score: 35.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002460.1	CmoCh16G002460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005684	U2-type spliceosomal complex