CmoCh16G002450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	pre-mRNA-splicing factor CWC25 homolog
Location	Cmo_Chr16: 1083338 .. 1086018 (-)
RNA-Seq Expression	CmoCh16G002450
Synteny	CmoCh16G002450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGATTCGCAAGACTGTAAGTTCATTTTTTCCTTAATGCTTTTTTCTTCTCCTTACATCCCTTTAACCACTATTAAGTTCTAGAACTTTTACTGTCCTAACACGGGCTATGGAAATTATATTGAAATATCCTTTTTCCATTCATTATTTTCTTGAGAAAGTTTCTGAACTATGTCCATGGACACTTTGTGGTAGAGAAAGCTGGTGGCTTATCTAAATTCCAAGTTTTTCTTTTGAGTTGATGTAATGGATTTCTCTGCATTTCTCGCCCTGTCGATAGGAGCTAAAGATGAATCTATGATCAGAAAGTTTCTTTCGGTATATCTTCATGGCTAGTCAATTGTGGCAAAAGTGGAAGCTTGTTGATAAGAAATCAATCCAAGAAAAAACTTTGATACCAAATGATAAGGAATCACTAAGAAGGAAATAAGATTCGTATTACCTTGTTGATTGAATATCTCAAGGTAAGAACACTTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAATTTGAATGATTCTAAACATGCCATCTAAACTACATAGAATTGCAAGAAAACTTAGTCATTTGCTAAAGGAAAGCACAAATGCTCATTTTACTACATTTGCTGAGTCTCCTTACAAATACAACATACATGGTTCTATATAACCTCAAAGGAAATATATATCCGATCTTGAGCCTAAAGTTCTGATATCAAATGATAAGGAATAAGAGATTTCCCGTTGATTCCTTATCACTTGTGTTAAACAATTCCCCTGACAAATAATGAACTGCCACATCAAGAATGTTCCGGTACAATAATTTTCATTCTTGTAATAGAATCTCTGTTTATCTCATGATCGTATTATCTGCAAGCTCTTTCCCTTGTTTGACTTGAAGAATAGATCTGAGGTGTTTTCTTCTTTAAAAATTATTAGGTTGAAGTGGAAAAACACAAGGCCAAGAATCCTGATGACGAAGGAGAACGGAAGAAGCATTGCCATAGTAAATCAAAACGTCGTAAAGATTCTCCTCCGGGAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGTGGCTCAAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGATACAGAGATTCTTATACTCACAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAATACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGTCGAAATTTCTTAGACACTGCTCAGAAACGCATGTATAGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGGTAATGCACATCACTTGTATACTTTGCTTGTGGTTATTGTTTAACATCATCCAATGTGATTCAAGTCATGTTGATCACATTCATATATGGTTTGTTTAAATTAAATTGCTGATTTTTTTCTAATGATACTGAATTTATGAACTTGAATCACATTGGATGTATACATCTCTCAATGAACGAAATTTGCCTGTTCAAAATTGTCTTCCAGCCGTTTTAAATGATTGATCGTTAAAGGAAAGGAAAGGAAAAGTGGTCTTAATATGTATACTCTATAGTTAAAGTCTGTCTTGTTTGCGCAACTTTTGAAGATGCCCAGTTAATGTATTCAATGTTCAGCTTATTACTGTACTCTTTAGCTTAGTTTTATTCCGGTAGTTTAATGGTCAGAATTTTATGCAATGTTTGGTTTTATTAAATTAATATGTTGCTTTAATTTATAAATTTTAAATTAATCTCGCTCATTTAATATTTAATATTAATCTTAATTGTGTGGTTGTAGTTTAGCGGTGAGTATTCCCAGTGTGAATTCAGCCACAATCTTACTTTTTAATCTTAATTTTCATGGCATATTTGGTTTTAGATACTTTATTTTAAATTTTTTAAATTAATCTCGCTCATTTAATCATAATATTAATTGTGTGGCTGTAGTTTAGTGGTGAGAATTCCACGTTGTGGCCGTGGAGACCTGGGCTCGAATCCCAGCAGCCACAATTTTACTTTTTTAGTCTTTCATAAGGGCTCGGATCTGCCATCACAATTATCTTACAATGTCAAGCCATACTTGATTTTAGTTACTTTATTTTATAAATTTTAAATTAATCTCACTCATTTAATATAAATATTTATTGTTTGGCTGTAGTTTGGGGTGAGAATTCAACGTTGTGGTCTTTACTTTTTAGTCTTTAATAAGGGCTCGGATCTGCCATCACAATTATCTTACAATCTCAAGCCATACTTGATTTTAGTACTTGATTTTAGTTACTTCATTTTATAA

mRNA sequence

ATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGCCAAGAATCCTGATGACGAAGGAGAACGGAAGAAGCATTGCCATAGTAAATCAAAACGTCGTAAAGATTCTCCTCCGGGAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGTGGCTCAAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGATACAGAGATTCTTATACTCACAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAATACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGTCGAAATTTCTTAGACACTGCTCAGAAACGCATGTATAGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGTTACTTCATTTTATAA

Coding sequence (CDS)

ATGGCTATGATTCGCAAGACTGTTGAAGTGGAAAAACACAAGGCCAAGAATCCTGATGACGAAGGAGAACGGAAGAAGCATTGCCATAGTAAATCAAAACGTCGTAAAGATTCTCCTCCGGGAAGGGAGTATGATTCTGAAAGTGCCAGCCCTGAGAGGCAGAGAAGGAAGAGAAGGAATCATGATCGTGACAAGAGTTCAAAACGTGATGTTCGTTCTTATTCAGAAGATAGAAGAAGCAAAACTGATTATATGAATGAGAGGGATCGTGATAGTGGCTCAAAATATGATCAGTCAGATCGAAAGACGCCCAAAAGCAATCCTCATGATTATTATGCAGAAGAGAGACATCATGACAGTTCAAAGAGATACAGAGATTCTTATACTCACAATGAAAAGGACAGTAGAAGAGTGGGGGAATCAAGAACTTATGAACCGAATGCTTCTAATACTCCTTTCGAGCCACGCCATAAGCATCGTAGGCCTGCTACCAAGCTTTCAGAAGAAGAGCGTGCAGCCAGGCTGCGTGAGATGCAGCAGGATGCTGAGTTCCATGAAGAGCAAAGATGGAGGCGTTTGAAGAAGGCAGCCGAGGATGATGCACTGGAAGCCGAACAAAATGCAGTGCCCTCGAGTCGAAATTTCTTAGACACTGCTCAGAAACGCATGTATAGTGCCGAGAAGGGAGGAAGCTCAACGATCGAGGAGAGTATTCGTCGGAGGACATACTATTCACAGGGTAAATCTGAGATTGAAGCCAACGCTTTTAGACGTTACTTCATTTTATAA

Protein sequence

MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRRRTYYSQGKSEIEANAFRRYFIL

Homology

[Close]

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL
Match: A0A6J1E963 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschata OX=3662 GN=LOC111430542 PE=3 SV=1)

HSP 1 Score: 477.6 bits (1228), Expect = 3.3e-131
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN
Sbjct: 159 MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 218

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 120
           HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS
Sbjct: 219 HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 278

Query: 121 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 180
           SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ
Sbjct: 279 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 338

Query: 181 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 240
           DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR
Sbjct: 339 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 398

Query: 241 RTYYSQGKSEIEANAFRR 259
           RTYYSQGKSEIEANAFRR
Sbjct: 399 RTYYSQGKSEIEANAFRR 416

[Close]

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL
Match: A0A6J1J231 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita maxima OX=3661 GN=LOC111482710 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 3.1e-113
Identity = 237/268 (88.43%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQR----- 60
           MAMIRKTVE EKHK KNPDD+ ER KH HSKSKRRKDS P REYDSESASPERQR     
Sbjct: 158 MAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDS 217

Query: 61  ------RKRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPH 120
                 R+RRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRD GSK+DQSDRKTPK NPH
Sbjct: 218 ESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPH 277

Query: 121 DYYAEERHHDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEE 180
           DYYAEERHHDSSKR RDSYT NEKDSRRVGESRTYEPNAS TPFEPRHKHRRPATKLSEE
Sbjct: 278 DYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEE 337

Query: 181 ERAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKG 240
           ERAARL EMQQDAEFHEEQRWRRLKKAA DDALEAEQNAVPSSRNFLDTAQKRMY AEKG
Sbjct: 338 ERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 397

Query: 241 GSSTIEESIRRRTYYSQGKSEIEANAFR 258
           GSSTIEESIRRR Y SQGKSEIEANAFR
Sbjct: 398 GSSTIEESIRRRAYCSQGKSEIEANAFR 425

[Close]

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL
Match: A0A5A7TSZ0 (Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00360 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.6e-93
Identity = 211/266 (79.32%), Postives = 223/266 (83.83%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKR KDS P R+YDSE ASPERQRRK   
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRK--- 217

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSK------YDQSDRKTPKSNPHDYYAE 120
           HD DKSS+ D  S+SEDRRSK D  NERDRD GSK      YDQSDRKT KSNP D  A 
Sbjct: 218 HDHDKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRD-SAA 277

Query: 121 ERHHDSSK--RYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERA 180
           +RHHD SK  R RDS+ +N+KDSRRVGE R YE +AS TP E RH+HRRP TKLSEEERA
Sbjct: 278 DRHHDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERA 337

Query: 181 ARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSS 240
           ARLREMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMY AEKGGSS
Sbjct: 338 ARLREMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSS 397

Query: 241 TIEESIRRRTYYSQGKSEIEANAFRR 259
           TIEESIRRRTYYSQGKSEIEANAFRR
Sbjct: 398 TIEESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL
Match: A0A1S3BY15 (pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.6e-93
Identity = 211/266 (79.32%), Postives = 223/266 (83.83%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKR KDS P R+YDSE ASPERQRRK   
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRK--- 217

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSK------YDQSDRKTPKSNPHDYYAE 120
           HD DKSS+ D  S+SEDRRSK D  NERDRD GSK      YDQSDRKT KSNP D  A 
Sbjct: 218 HDHDKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRD-SAA 277

Query: 121 ERHHDSSK--RYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERA 180
           +RHHD SK  R RDS+ +N+KDSRRVGE R YE +AS TP E RH+HRRP TKLSEEERA
Sbjct: 278 DRHHDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERA 337

Query: 181 ARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSS 240
           ARLREMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMY AEKGGSS
Sbjct: 338 ARLREMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSS 397

Query: 241 TIEESIRRRTYYSQGKSEIEANAFRR 259
           TIEESIRRRTYYSQGKSEIEANAFRR
Sbjct: 398 TIEESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL
Match: A0A0A0KU62 (Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 207/264 (78.41%), Postives = 221/264 (83.71%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKR KDS P R+YDSE  SPERQRRK   
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRK--- 217

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSK------YDQSDRKTPKSNPHDYYAE 120
           HD DKSS+ D  S+SEDRRSK +  NERDRD GSK      YDQSDRKT KSNPHD  A 
Sbjct: 218 HDHDKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHD-SAA 277

Query: 121 ERHHDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAAR 180
           +R+HD SKR RDSY  N++DSRRVGE R YE NAS TP E RH+HRRP TKLSEEERAAR
Sbjct: 278 DRYHDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAAR 337

Query: 181 LREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTI 240
           LREMQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMYSAEKGGSSTI
Sbjct: 338 LREMQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTI 397

Query: 241 EESIRRRTYYSQGKSEIEANAFRR 259
           EESIRRRTYYSQGKS+IEANAFRR
Sbjct: 398 EESIRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of CmoCh16G002450 vs. NCBI nr
Match: XP_022922575.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata])

HSP 1 Score: 477.6 bits (1228), Expect = 6.7e-131
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN
Sbjct: 159 MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 218

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 120
           HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS
Sbjct: 219 HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 278

Query: 121 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 180
           SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ
Sbjct: 279 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 338

Query: 181 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 240
           DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR
Sbjct: 339 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 398

Query: 241 RTYYSQGKSEIEANAFRR 259
           RTYYSQGKSEIEANAFRR
Sbjct: 399 RTYYSQGKSEIEANAFRR 416

[Close]

BLAST of CmoCh16G002450 vs. NCBI nr
Match: XP_022984402.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 6.3e-113
Identity = 237/268 (88.43%), Postives = 240/268 (89.55%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQR----- 60
           MAMIRKTVE EKHK KNPDD+ ER KH HSKSKRRKDS P REYDSESASPERQR     
Sbjct: 158 MAMIRKTVEAEKHKDKNPDDKRERMKHRHSKSKRRKDSSPEREYDSESASPERQRRNHDS 217

Query: 61  ------RKRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPH 120
                 R+RRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRD GSK+DQSDRKTPK NPH
Sbjct: 218 ESASPERQRRNHDRDKSSKRDVRSYSEDRRSKTDYMNERDRDRGSKFDQSDRKTPKRNPH 277

Query: 121 DYYAEERHHDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEE 180
           DYYAEERHHDSSKR RDSYT NEKDSRRVGESRTYEPNAS TPFEPRHKHRRPATKLSEE
Sbjct: 278 DYYAEERHHDSSKRDRDSYTRNEKDSRRVGESRTYEPNASKTPFEPRHKHRRPATKLSEE 337

Query: 181 ERAARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKG 240
           ERAARL EMQQDAEFHEEQRWRRLKKAA DDALEAEQNAVPSSRNFLDTAQKRMY AEKG
Sbjct: 338 ERAARLSEMQQDAEFHEEQRWRRLKKAAVDDALEAEQNAVPSSRNFLDTAQKRMYGAEKG 397

Query: 241 GSSTIEESIRRRTYYSQGKSEIEANAFR 258
           GSSTIEESIRRR Y SQGKSEIEANAFR
Sbjct: 398 GSSTIEESIRRRAYCSQGKSEIEANAFR 425

[Close]

BLAST of CmoCh16G002450 vs. NCBI nr
Match: XP_023551879.1 (LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-109
Identity = 229/258 (88.76%), Postives = 235/258 (91.09%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKRRK S P R+YDSES SPE Q   RRN
Sbjct: 164 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRRKASSPERDYDSESVSPEMQ---RRN 223

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSKYDQSDRKTPKSNPHDYYAEERHHDS 120
           HDRDKSSK DV SYSEDRRSKTDY+NERDRD GSKYDQSDRKTPKSNPHDYYAEERHHDS
Sbjct: 224 HDRDKSSKHDVHSYSEDRRSKTDYVNERDRDRGSKYDQSDRKTPKSNPHDYYAEERHHDS 283

Query: 121 SKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLREMQQ 180
            KR RDSYTHNEKDS +VGESRT EPNAS +P+EPRHKHRRPATKLSEE RAARLREMQQ
Sbjct: 284 XKRDRDSYTHNEKDSTKVGESRTREPNASKSPYEPRHKHRRPATKLSEEGRAARLREMQQ 343

Query: 181 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEESIRR 240
           DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMY AEKGGSSTIEESI  
Sbjct: 344 DAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYGAEKGGSSTIEESICW 403

Query: 241 RTYYSQGKSEIEANAFRR 259
           RTYYSQGKSEIEANAFRR
Sbjct: 404 RTYYSQGKSEIEANAFRR 418

[Close]

BLAST of CmoCh16G002450 vs. NCBI nr
Match: XP_008453851.1 (PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa] >TYK16902.1 pre-mRNA-splicing factor CWC25-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 9.5e-93
Identity = 211/266 (79.32%), Postives = 223/266 (83.83%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKR KDS P R+YDSE ASPERQRRK   
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDASPERQRRK--- 217

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSK------YDQSDRKTPKSNPHDYYAE 120
           HD DKSS+ D  S+SEDRRSK D  NERDRD GSK      YDQSDRKT KSNP D  A 
Sbjct: 218 HDHDKSSRHDGHSHSEDRRSKADSKNERDRDRGSKYAARTSYDQSDRKTSKSNPRD-SAA 277

Query: 121 ERHHDSSK--RYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERA 180
           +RHHD SK  R RDS+ +N+KDSRRVGE R YE +AS TP E RH+HRRP TKLSEEERA
Sbjct: 278 DRHHDRSKRDRDRDSHANNDKDSRRVGEPRYYESHASETPNESRHRHRRPTTKLSEEERA 337

Query: 181 ARLREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSS 240
           ARLREMQQDAE HEEQRW+RLKKAAEDDALEA+QNAVPSSRNFLDTAQKRMY AEKGGSS
Sbjct: 338 ARLREMQQDAELHEEQRWKRLKKAAEDDALEAKQNAVPSSRNFLDTAQKRMYGAEKGGSS 397

Query: 241 TIEESIRRRTYYSQGKSEIEANAFRR 259
           TIEESIRRRTYYSQGKSEIEANAFRR
Sbjct: 398 TIEESIRRRTYYSQGKSEIEANAFRR 419

[Close]

BLAST of CmoCh16G002450 vs. NCBI nr
Match: XP_004146897.1 (pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus] >KGN53175.1 hypothetical protein Csa_014942 [Cucumis sativus])

HSP 1 Score: 345.5 bits (885), Expect = 4.0e-91
Identity = 207/264 (78.41%), Postives = 221/264 (83.71%), Query Frame = 0


Query: 1   MAMIRKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQRRKRRN 60
           MAMIRKTVEVEKHK KNPDD+ ERKKH HSKSKR KDS P R+YDSE  SPERQRRK   
Sbjct: 158 MAMIRKTVEVEKHKDKNPDDKRERKKHRHSKSKRHKDSSPERDYDSEDVSPERQRRK--- 217

Query: 61  HDRDKSSKRDVRSYSEDRRSKTDYMNERDRDSGSK------YDQSDRKTPKSNPHDYYAE 120
           HD DKSS+ D  S+SEDRRSK +  NERDRD GSK      YDQSDRKT KSNPHD  A 
Sbjct: 218 HDHDKSSRHDGHSHSEDRRSKAETKNERDRDRGSKYAARTSYDQSDRKTFKSNPHD-SAA 277

Query: 121 ERHHDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAAR 180
           +R+HD SKR RDSY  N++DSRRVGE R YE NAS TP E RH+HRRP TKLSEEERAAR
Sbjct: 278 DRYHDRSKRDRDSYATNDRDSRRVGELRYYESNASETPNESRHRHRRPTTKLSEEERAAR 337

Query: 181 LREMQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTI 240
           LREMQQDAE HEEQR++RLKKA EDDALEA+QNAVPSSRNFLD AQKRMYSAEKGGSSTI
Sbjct: 338 LREMQQDAELHEEQRFKRLKKADEDDALEAKQNAVPSSRNFLDMAQKRMYSAEKGGSSTI 397

Query: 241 EESIRRRTYYSQGKSEIEANAFRR 259
           EESIRRRTYYSQGKS+IEANAFRR
Sbjct: 398 EESIRRRTYYSQGKSQIEANAFRR 417

[Close]

BLAST of CmoCh16G002450 vs. TAIR 10
Match: AT2G44200.1 (CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor )

HSP 1 Score: 110.2 bits (274), Expect = 2.6e-24
Identity = 102/261 (39.08%), Postives = 147/261 (56.32%), Query Frame = 0


Query: 5   RKTVEVEKHKAKNPDDEGERKKHCHSKSKRRKDSPPGREYDSESASPERQ--RRKRRNHD 64
           R++ +    K ++  D+G +++  H     R+ S    E D ES   E +    +RR  D
Sbjct: 243 RESRDRHYEKRRSELDDGHKRRERHDTHYERRRS----EMDDESKRRESRDNHYERRRSD 302

Query: 65  RDKSSKRDVRSYSEDRRSKTDYMNE-RDRDSGSKYDQSD----RKTPKSNPHDYYAEERH 124
            D  SKR         R ++D  +E + R+S  K  +SD     K   + P++ Y     
Sbjct: 303 LDDESKRRESHDKHFERQRSDLDDEYKRRESQDKRRRSDIDDEPKRRDARPNEKYRNRSP 362

Query: 125 HDSSKRYRDSYTHNEKDSRRVGESRTYEPNASNTPFEPRHKHRRPATKLSEEERAARLRE 184
               +R  +  ++ ++D +R  E        S  P E +++ R+  +KLSEEERAARL++
Sbjct: 363 KGGVER-ENLKSYGQEDKKRKAEDLD-----SGKPNEYQNRRRKGGSKLSEEERAARLKQ 422

Query: 185 MQQDAEFHEEQRWRRLKKAAEDDALEAEQNAVPSSRNFLDTAQKRMYSAEKGGSSTIEES 244
           MQ DAE HEEQRW RLKKA E DA+EA++N V + ++FLD A K +Y  EKGGSSTIEES
Sbjct: 423 MQMDAEVHEEQRWTRLKKADETDAVEADKNKVSTGKSFLDDANKSVYGVEKGGSSTIEES 482

Query: 245 IRRRTYYSQGKSEIEANAFRR 259
           +RRR+YYSQ  +  E NAFRR
Sbjct: 483 VRRRSYYSQRGTAAEGNAFRR 493

The following BLAST results are available for this feature:

BLAST of CmoCh16G002450 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E963	3.3e-131	100.00	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita moschat...	[more]
A0A6J1J231	3.1e-113	88.43	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog OS=Cucurbita maxima ...	[more]
A0A5A7TSZ0	4.6e-93	79.32	Pre-mRNA-splicing factor CWC25-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BY15	4.6e-93	79.32	pre-mRNA-splicing factor CWC25 homolog OS=Cucumis melo OX=3656 GN=LOC103494454 P...	[more]
A0A0A0KU62	1.9e-91	78.41	Cir_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025080 PE=3 ...	[more]

BLAST of CmoCh16G002450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922575.1	6.7e-131	100.00	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita moschata]	[more]
XP_022984402.1	6.3e-113	88.43	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog [Cucurbita maxima]	[more]
XP_023551879.1	1.5e-109	88.76	LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC25 homolog, partial [Cucurbita ...	[more]
XP_008453851.1	9.5e-93	79.32	PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Cucumis melo] >KAA0044681.1 p...	[more]
XP_004146897.1	4.0e-91	78.41	pre-mRNA-splicing factor CWC25 homolog [Cucumis sativus] >KGN53175.1 hypothetica...	[more]

BLAST of CmoCh16G002450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44200.1	2.6e-24	39.08	CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 187..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..171
None	No IPR available	PANTHER	PTHR16196	CELL CYCLE CONTROL PROTEIN CWF25	coord: 1..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002450.1	CmoCh16G002450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005684	U2-type spliceosomal complex