CmoCh16G002420 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor MYB1R1
Location	Cmo_Chr16: 1072714 .. 1072941 (+)
RNA-Seq Expression	CmoCh16G002420
Synteny	CmoCh16G002420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

mRNA sequence

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

Coding sequence (CDS)

ATGGAAAACAGAGACGAATCTATGAGGAAGAGTCTCAGCATGGGGAATTTGAATCTTCACTCCTGCAATAATGTTCTTGATCTTAATACCGCCGCCGCCGCCGCCGCCGCCGTGAACAACGTCGCCGATGATAATTCCGCCTCCGCCGACAACGCTGGGTATCTTTCCGATGGGTTTATTCATAACAAGAGACGCAAAGCCGCTCATGAGAGGAAGAAAGGTTCGTAA

Protein sequence

MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFIHNKRRKAAHERKKGS

Homology

[Close]

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL
Match: A0A6J1E4T8 (probable transcription factor At5g61620 OS=Cucurbita moschata OX=3662 GN=LOC111430782 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.5e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 121

[Close]

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL
Match: A0A6J1J8B3 (probable transcription factor At5g61620 OS=Cucurbita maxima OX=3661 GN=LOC111483484 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.4e-28
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNT AAA AAVNNVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNT-AAAVAAVNNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 120

[Close]

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL
Match: A0A1S3BXC8 (transcription factor MYB1R1 OS=Cucumis melo OX=3656 GN=LOC103494457 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLH-SCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGF 60
           MENRDESMRKSLSMGNLNLH SCNNVLDLN       AVNNV  DN+ASAD++GYLSDG 
Sbjct: 44  MENRDESMRKSLSMGNLNLHSSCNNVLDLNN---NTTAVNNVTGDNAASADDSGYLSDGL 103

Query: 61  IHNKRRKAAHERKKG 75
           IHNKRRKAAHERKKG
Sbjct: 104 IHNKRRKAAHERKKG 115

[Close]

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL
Match: A0A0A0KXN0 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G025050 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.3e-20
Identity = 60/77 (77.92%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASA---DNAGYLSD 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLN        VNNV  DN+A+A   D+AGYLSD
Sbjct: 45  MENRDESMRKSLSMGNLNLHSCNNVLDLNN----TTTVNNVTGDNTAAAASTDDAGYLSD 104

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 105 GLIHNKRRKAAHERKKG 117

[Close]

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL
Match: A0A6J1CH76 (probable transcription factor At5g61620 OS=Momordica charantia OX=3673 GN=LOC111011622 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.7e-14
Identity = 49/74 (66.22%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MEN DES+RKSLSMGNL +H+CNN +D N AAAA A  N     N+ + D+ GYLSDG I
Sbjct: 41  MENNDESIRKSLSMGNL-IHACNNGVDHNNAAAAGAGAN-----NAGAGDDGGYLSDGLI 100

Query: 61  HNKRRKAAHERKKG 75
           HNK+RKAAHERKKG
Sbjct: 101 HNKKRKAAHERKKG 108

[Close]

BLAST of CmoCh16G002420 vs. NCBI nr
Match: XP_022922957.1 (probable transcription factor At5g61620 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 121

[Close]

BLAST of CmoCh16G002420 vs. NCBI nr
Match: KAG7014851.1 (putative transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-30
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 121

[Close]

BLAST of CmoCh16G002420 vs. NCBI nr
Match: XP_022985491.1 (probable transcription factor At5g61620 [Cucurbita maxima])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNT AAA AAVNNVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNT-AAAVAAVNNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 120

[Close]

BLAST of CmoCh16G002420 vs. NCBI nr
Match: XP_023553250.1 (probable transcription factor At5g61620 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 69/74 (93.24%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFI 60
           MENRDESMRKSLSMGNLNLHSCNNVLDLNT    AAAV NVADDNSASADNAGYLSDGFI
Sbjct: 48  MENRDESMRKSLSMGNLNLHSCNNVLDLNT----AAAVYNVADDNSASADNAGYLSDGFI 107

Query: 61  HNKRRKAAHERKKG 75
           HNKRRKAAHERKKG
Sbjct: 108 HNKRRKAAHERKKG 117

[Close]

BLAST of CmoCh16G002420 vs. NCBI nr
Match: XP_038876691.1 (probable transcription factor At5g61620 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 3.3e-22
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1   MENRDESMRKSLSMGNLNLHSC-NNVLDLNTAAAAAAAVNNVADDN--SASADNAGYLSD 60
           M+NRDESMRKSLSMGNLNLH+C NNVLDLN  AAAAAAVNN+A DN  +ASAD+AGYLSD
Sbjct: 54  MDNRDESMRKSLSMGNLNLHACSNNVLDLNNNAAAAAAVNNLAGDNAVAASADDAGYLSD 113

Query: 61  GFIHNKRRKAAHERKKG 75
           G IHNKRRKAAHERKKG
Sbjct: 114 GLIHNKRRKAAHERKKG 130

[Close]

BLAST of CmoCh16G002420 vs. TAIR 10
Match: AT5G61620.1 (myb-like transcription factor family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 29/68 (42.65%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 7   SMRKSLSMGNLNLHSCNNVLDLNTAAAAAAAVNNVADDNSASADNAGYLSDGFIHNKRRK 66
           ++RKSLS+GNL+             A  A   +N + D  A+ D+ GY SDG IH+K+ K
Sbjct: 53  ALRKSLSLGNLD-------------ALLANDESNGSGDPIAAVDDTGYHSDGQIHSKKGK 107

Query: 67  AAHERKKG 75
            AHE+KKG
Sbjct: 113 TAHEKKKG 107

The following BLAST results are available for this feature:

BLAST of CmoCh16G002420 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G002420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4T8	3.5e-30	100.00	probable transcription factor At5g61620 OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J8B3	7.4e-28	97.30	probable transcription factor At5g61620 OS=Cucurbita maxima OX=3661 GN=LOC111483...	[more]
A0A1S3BXC8	1.5e-20	81.33	transcription factor MYB1R1 OS=Cucumis melo OX=3656 GN=LOC103494457 PE=4 SV=1	[more]
A0A0A0KXN0	4.3e-20	77.92	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G02505...	[more]
A0A6J1CH76	2.7e-14	66.22	probable transcription factor At5g61620 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CmoCh16G002420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922957.1	7.3e-30	100.00	probable transcription factor At5g61620 [Cucurbita moschata]	[more]
KAG7014851.1	7.3e-30	100.00	putative transcription factor, partial [Cucurbita argyrosperma subsp. argyrosper...	[more]
XP_022985491.1	1.5e-27	97.30	probable transcription factor At5g61620 [Cucurbita maxima]	[more]
XP_023553250.1	1.1e-25	93.24	probable transcription factor At5g61620 [Cucurbita pepo subsp. pepo]	[more]
XP_038876691.1	3.3e-22	84.42	probable transcription factor At5g61620 [Benincasa hispida]	[more]

BLAST of CmoCh16G002420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61620.1	1.5e-04	42.65	myb-like transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002420.1	CmoCh16G002420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009739	response to gibberellin
molecular_function	GO:0003677	DNA binding