CmoCh16G002230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G002230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase III subunit rpc4-like
Location	Cmo_Chr16: 985512 .. 988413 (-)
RNA-Seq Expression	CmoCh16G002230
Synteny	CmoCh16G002230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTCGAATCCTTCTCATTTTTCTTTTTCACCATTTTCCCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGGTAACCCAAATTTCAGGTTTCAGCTTACTATTTTTTTGCTTCCTCTTCAACTTGAACTCGATTTAGATCTAAACCCTTCTCCATCTCTCTGCCTCTCTGTTCCTTCTGCAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACGTACTCCTCTGATCTCATCTTCTTCCACATTTTGGTCTCTGAATTTGCACAAAGTTACAGTCAACTTGTTCTTATCCTTAATTTGTTTGGCGAATTGCAGTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGTAAGTTCCTTTGTTCTTCTATGATTTTCGAATCCTTCTGTACATTTTTCGTTTGATGTTTAGACGATTTTCCGTCTTTCTGACTTCAGCTTTGGAGGATTGAAATTTGTGGATAAAACATTTGAATCTTTTCCCCAGTTTTTAGCAACTGTTTCACTACAACTTTCCGTTTGGTTCCCGAGAAAAAAAAAAAAAATTGGGATGGATATGAATCGTTTTCGAGCAGCGTTTGGGGTTTCTCATTTCTTGCGAGATGAAAATAAATTTCATTTAGGAGAATAATTTGTGTGATTAGTGGACACGTGTATGCCTCAGCTTTAACATTTTTCTTAAACTAACTTTTAACACCGTCTGATCTGACCACGTGGCATTCACTAATGTTAGTTCATGAACTGTTCGAATTCATTTGATTCTTTCTCCACTTTGTAGGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATGTAAAAGTCCTTTTCGAAATTCATGTATTTTTTTCAATGAAATTTTGACGGTCTAATCCCATATGAACAGATTTGTTTTCTTGTTCATAATCAAGATTGTTGCATTACCTTTTCCTCTATTTTGATATCCATATCTGCAGCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGTAATTTCTCTTTCTCCATCTCACATTTGGCGCGCGCACACACAGATTAGCGTCCTGATTTCATGATATTTTCTCAGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGGTATGTCTTTATTCTCTTGAAGTCACTCAAAATCTTATAATCAATCTTGAAAACAGAAGCGGACCTTTATGAGTTCTTAGATTAGGGCTTGTTTATCTCTGCTGATATGAACCTCTTACCTTGGTGGACGATGATTCTGGGTTTGTTCTGTAATTGCTAACTCTATTGCCTCTTGTTGGGGTTTAGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGTTGGTGAATGGATTGATAAATGTGGCTTGAAATATATTAATACATGCAGGATCTAGTTATAATATGGTGGTGTTTTGATGGTGCAGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACGGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTGAGTAATGTCATTAGTGTTCTAAGATCGAAATCGAGAATTGTTAATGTAACAGCTTAAGCCCACCACTAGCAGATATTGTTTGCTTTGGCTCGTTATGTATCGTTGTCAGCCTCACGGTTTTTAAACGCGTCTATTAGAGCTAGAGGTTTTTACACTAAGGAATGCTTCGTTTCCCTCTCCAACCGACGTGGAATCTCACAATTCACTCCTCTTTGGGGCCAGCTTTCTTGCTAGCATACCACCCGGTGTCTGGCCCTGATATCATTTGTAACAAACCGTGAAGCTGATAGCAATACATAACTAGACAAAGTGGATAATATCTACTGACGGCGGGCTTGAACGGTTATATGTTACCGTCCTTGTTTAGAGATCATACATAGTGATTTGCTCTGGTTCTCTTTTTGGGGCTGTTGCAGGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAACTTGCGTTTCGCTGCTCTTAGGATGTCACATTATTCATCAAACTGCCTCCTTTGTTAATCCAATGCAGCAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTAGTAAACAATGTGGATAACTGTAAATGTTTTTTTGTTTTCTTTTTTAATGGTAAGTTAAGCTATGCTCT

mRNA sequence

AGGGTTCGAATCCTTCTCATTTTTCTTTTTCACCATTTTCCCTCTTTCCCTTCGTCATCTTCAACCTCAAGCTGATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACGGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGAACTTGAAGAACAGGCCTGCGGATAGAACAACCATCTCAAAAGGAACAGGAAAGAACGGCTAATCCTTACAATGTCAAAATGGATATGACCAATGGCTGTGTACTGAAAATGCTCACTAGGTAAGGAACTTGCGTTTCGCTGCTCTTAGGATGTCACATTATTCATCAAACTGCCTCCTTTGTTAATCCAATGCAGCAAGAACGTGTTCATTCTCTCTAATTTCTAGCTGTGTAGTAGTAAACAATGTGGATAACTGTAAATGTTTTTTTGTTTTCTTTTTTAATGGTAAGTTAAGCTATGCTCT

Coding sequence (CDS)

ATGAAGAATCCCGATCCATCTCCTCCGCGCAGAAAGATCAAATTCGCCCCAAAATCCACACCGCGCAGAAGGCCACCCCCCGCTCCAAAAACTGAAGACGAAGATGTAGTTGGTAATGTTGCTCAAACTCGCTACCTCTTACGCCGTGCGACTGAGAATCTTGGAAAACGAGGGAACAAAGTCGAGAAAAAATCTTCTGTGCAAGTTGCATTCGGGCCTGGTGCGGCATCGGCATCAGAATCATCTTCTATTAGAACGTATGGAGTCCCCAAAATCGGAAACAGTAGCAGAAAAAAGGATATTGAGCCTGAATCTGCTGAAGATGAGGAACTTATCTTGCCTCCGCCTATGGATTTCGAAGAATATGGGAAAAATCTCAATGAAAAAACAGAGGATGCAACCAAGAACACGAAGGATTACAAAGAACCATGGGATTACCATAATTCTTACTATCCTACTACGCTTCCTTTACGGATGCCTTACTCTGGAGATCCTGAAATGCTTGATGAAGCTGAGTTCGGGCAGGATGTGATGGATAGGGAGTATGATGAGAACTCTAGTATACCTGCCTTGGATCTTGGATTGCTGGATGAAAATTCTGAGAATACTAGGTACTTTTTTCAGCTTCCTGCTTGTCTTCCTTTTCCCAAACGATCATCTACTTCAACGGGAAAGGAGAAGGTAGGAAACTTGAGATCTTCAATCAGCACTGCCTCATCAGAGCTGGGCGATTTACGGAACCTGCCCGGTGGATATATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTGGGAGATACACTTTACGATGTTTCTTCTGGTTTAGACTGCAGTTTTCTTCAACATGTTGTGGCGATCAACACCGACAAGGGACAGTGCTGCGATCTCGGAGAAATTGGCAAACGAGTCGTGGTGACACCAGATATAGGTTCCCTCTTGAATTCAATGACTGACTTGGGATGA

Protein sequence

MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEEYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDLG

Homology

[Close]

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot
Match: Q91WD1 (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 245 LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot
Match: P05423 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 5.4e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 245 LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G+   LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            +  ++V +PD  SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394

[Close]

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot
Match: Q5E9Z7 (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 245 LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
           L +L  G +GKLLI KSG V+L LG    DV+ G  CSFLQ +V++   ++  G    LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377

Query: 305 EIGKRVVVTPDIGSLLN 319
            I  ++V +P+  SLL+
Sbjct: 378 HIKHKLVCSPNFESLLD 394

[Close]

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot
Match: P25441 (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC53 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 36/126 (28.57%), Postives = 62/126 (49.21%), Query Frame = 0


Query: 199 NSENTRYF-FQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELG--------DLRNLP 258
           N++  R+  FQLP  LP  +R +    KE +    S  S     +           R L 
Sbjct: 298 NNKPERFMVFQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTREL- 357

Query: 259 GGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAIN--TDKGQCCDLGEIGKRV 314
            G +G + ++KSG + +++G+ + D+  G + +FLQ V+A++   D      LG +  ++
Sbjct: 358 AGKVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKI 417

[Close]

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot
Match: Q8T1V7 (DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=44689 GN=polr3d PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 9.6e-05
Identity = 27/77 (35.06%), Postives = 38/77 (49.35%), Query Frame = 0


Query: 245 LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKG-----QCCD 304
           ++ +P G +G L IYKSG   L++G   YD+SSG    FL+ V    T  G      C  
Sbjct: 351 IKEMPSGKLGTLKIYKSGKSILKIGTVEYDISSGDKLKFLEEVQCFQTKGGPDNSPTCYT 410

Query: 305 LGEIGKRVVVTPDIGSL 317
           LG   + +V  P I  +
Sbjct: 411 LGIPSQHLVAAPIISQI 427

[Close]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL
Match: A0A6J1E8A8 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita moschata OX=3662 GN=LOC111430793 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 4.2e-181
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL
Match: A0A6J1J8D2 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN=LOC111483488 PE=4 SV=1)

HSP 1 Score: 610.5 bits (1573), Expect = 4.0e-171
Identity = 310/324 (95.68%), Postives = 316/324 (97.53%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK DIEPESAEDEELILP P+DFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 EYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           G+IGKRVVVTPDIGSLLNS TDLG
Sbjct: 301 GDIGKRVVVTPDIGSLLNSTTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL
Match: A0A5A7TN83 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004050 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 9.6e-133
Identity = 255/335 (76.12%), Postives = 277/335 (82.69%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120
           NKVE+KSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP  MD
Sbjct: 61  NKVERKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120

Query: 121 FEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           DEAEFGQD M+REYDENS IPALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL
Match: A0A0A0KZ61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.8e-132
Identity = 253/335 (75.52%), Postives = 278/335 (82.99%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN DPSPPRRK+KFAPKS+ R+RPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP   D
Sbjct: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120

Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL
Match: A0A1S3BYJ9 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 4.8e-132
Identity = 255/335 (76.12%), Postives = 276/335 (82.39%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
           MKN D SPPRRK+KFAPKS+ RRRPPP P  KTEDED  G VAQTRYLLRRA ENLGKR 
Sbjct: 1   MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60

Query: 61  NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMD 120
           NKVEKKSSVQVAFGPGA S   SSSIRTYGVPK+ N SRK DIEPE  EDEE +LP  MD
Sbjct: 61  NKVEKKSSVQVAFGPGAEST--SSSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120

Query: 121 FEEYGKNLNEKTED----------ATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
             E GK  ++KT+D           TK  +DYKEPWDY NSYYPTTLPLRMPYSGD E L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERL 180

Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
           DEAEFGQD M+REYDENS IPALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240

Query: 241 GNLRSSISTASSELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
           GN RSS ST+SS+L DL+ L  G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300

Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 324
           AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333

[Close]

BLAST of CmoCh16G002230 vs. NCBI nr
Match: XP_022922968.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata])

HSP 1 Score: 643.7 bits (1659), Expect = 8.8e-181
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. NCBI nr
Match: KAG7014838.1 (DNA-directed RNA polymerase III subunit RPC4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 642.1 bits (1655), Expect = 2.6e-180
Identity = 323/324 (99.69%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. NCBI nr
Match: KAG6576814.1 (DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 635.6 bits (1638), Expect = 2.4e-178
Identity = 321/324 (99.07%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEE ILP PMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. NCBI nr
Match: XP_023551929.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 617.1 bits (1590), Expect = 8.8e-173
Identity = 313/324 (96.60%), Postives = 316/324 (97.53%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D EPESAEDEELI P PMDFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDA KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPE+LDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           E DENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 ECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. NCBI nr
Match: XP_022985496.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima])

HSP 1 Score: 610.5 bits (1573), Expect = 8.2e-171
Identity = 310/324 (95.68%), Postives = 316/324 (97.53%), Query Frame = 0


Query: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
           MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNK
Sbjct: 1   MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNK 60

Query: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
           VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK DIEPESAEDEELILP P+DFE
Sbjct: 61  VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFE 120

Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
           EYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDR 180

Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
           EYDENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 EYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240

Query: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
           ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDL 300

Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 325
           G+IGKRVVVTPDIGSLLNS TDLG
Sbjct: 301 GDIGKRVVVTPDIGSLLNSTTDLG 324

[Close]

BLAST of CmoCh16G002230 vs. TAIR 10
Match: AT4G25180.1 (RNA polymerase III RPC4 )

HSP 1 Score: 187.6 bits (475), Expect = 1.6e-47
Identity = 128/323 (39.63%), Postives = 173/323 (53.56%), Query Frame = 0


Query: 5   DPSPPRRKIKFAPK-STPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKV 64
           D    + K +F P    P RR P AP   TE E+   N+  +R   RR    +G+R    
Sbjct: 2   DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61

Query: 65  EKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEE 124
            K SS +VAF P  +      +IR++GVPK  +     D+ P S      ILP       
Sbjct: 62  TKASSPEVAFQPSLSPL----AIRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTA 121

Query: 125 YGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDRE 184
             ++  E     T+   DY EPWDY NSYYPT LPLR P SGD E+LD+ EFG+   +R+
Sbjct: 122 AQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRD 181

Query: 185 YDENSSIPALDLGLLD-ENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 244
           YDEN+   A +LGL   ++S+   + F++P CLP  K+++ +T K  V    S IS    
Sbjct: 182 YDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGIS---- 241

Query: 245 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 304
                  LP G+MGK+L+YKSGAVKL++GD L+DVS G        VVAI+     C  +
Sbjct: 242 --NPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRI 301

Query: 305 GEIGKRVVVTPDIGSLLNSMTDL 324
           G   K V VTPD+ SLLN  +D+
Sbjct: 302 GSSAKFVTVTPDVESLLNPASDM 307

[Close]

BLAST of CmoCh16G002230 vs. TAIR 10
Match: AT5G09380.1 (RNA polymerase III RPC4 )

HSP 1 Score: 175.6 bits (444), Expect = 6.3e-44
Identity = 118/319 (36.99%), Postives = 171/319 (53.61%), Query Frame = 0


Query: 5   DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKK 64
           +  PP RK+KFAPK+ P+R P P  K E  +   N AQ   LLRR  E   ++    +K 
Sbjct: 2   EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLRKPKADKKV 61

Query: 65  SSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFEEYGK 124
            + QVA+  G  +++ S+        K  N S                         YG 
Sbjct: 62  PASQVAWLGGVVNSTRSN--------KYLNRSN----------------------GAYGS 121

Query: 125 NLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDE 184
              ++ E        YKEPWDY+ SYYP TLP+R PY+GDPE+LD  EF Q      + E
Sbjct: 122 TSTQEIE--------YKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQ---AGGHHE 181

Query: 185 NSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGD 244
           +S   A +LGL++++ E   +F +LP+    P  S+ +   E   N++  +     +  D
Sbjct: 182 DSLNTAANLGLMEDSGEQKMFFMRLPS---VPLASTPTENLETRPNIKGPV---EKKTVD 241

Query: 245 LRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIG 304
           L+ LP GYMGKLL+YKSGAVK++LG+ LYDVS GL   F Q V+ +NT++  CC +G++ 
Sbjct: 242 LKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVY 272

Query: 305 KRVVVTPDIGSLLNSMTDL 324
           K  V+TPDI S+L  + ++
Sbjct: 302 KHAVLTPDIDSILKDIENI 272

The following BLAST results are available for this feature:

BLAST of CmoCh16G002230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91WD1	4.2e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ...	[more]
P05423	5.4e-08	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P...	[more]
Q5E9Z7	2.1e-07	42.86	DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=...	[more]
P25441	1.1e-05	28.57	DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain...	[more]
Q8T1V7	9.6e-05	35.06	DNA-directed RNA polymerase III subunit rpc4 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of CmoCh16G002230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8A8	4.2e-181	100.00	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1J8D2	4.0e-171	95.68	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7TN83	9.6e-133	76.12	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0KZ61	4.8e-132	75.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1	[more]
A0A1S3BYJ9	4.8e-132	76.12	DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CmoCh16G002230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922968.1	8.8e-181	100.00	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata]	[more]
KAG7014838.1	2.6e-180	99.69	DNA-directed RNA polymerase III subunit RPC4 [Cucurbita argyrosperma subsp. argy...	[more]
KAG6576814.1	2.4e-178	99.07	DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma su...	[more]
XP_023551929.1	8.8e-173	96.60	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022985496.1	8.2e-171	95.68	DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima]	[more]

BLAST of CmoCh16G002230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25180.1	1.6e-47	39.63	RNA polymerase III RPC4	[more]
AT5G09380.1	6.3e-44	36.99	RNA polymerase III RPC4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PFAM	PF05132	RNA_pol_Rpc4	coord: 205..313 e-value: 3.6E-24 score: 85.9
IPR007811	DNA-directed RNA polymerase III subunit RPC4	PANTHER	PTHR13408	DNA-DIRECTED RNA POLYMERASE III	coord: 1..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	PANTHER	PTHR13408:SF6	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-LIKE ISOFORM X1	coord: 1..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G002230.1	CmoCh16G002230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription by RNA polymerase III
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome