CmoCh16G001700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G001700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BHLH domain-containing protein
Location	Cmo_Chr16: 772068 .. 773468 (-)
RNA-Seq Expression	CmoCh16G001700
Synteny	CmoCh16G001700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCCCTTCTTACCAACCTTCGATCTTTGCTTCCTCTTCAACTTGTAGAGGTAAACACAGTTAAAAAATTCCATCTTTTGCTTCTTCCTTTCTTTTCTTTTAAAATTACCTTGTCTTTTTGTTCGAATAAGCTTGACTTAGTTGACTTAGTAACTTAATAGAATTATAGGATAATTGTTCAGTTTTGAGTCAGAATTGTTAGAAGTGGTTAACTTGCATAGAAGGTTTAGACATATGTTATTTTCACGGCCAGAAAGAGAATTAATAACCACGAGCTTAAGGTTCCTCGGTTCAAAAGCTCTCTCCACTCAGATTATGTGATGTCCAACGTTGGTTGGAGAGGAGAACAAACCACCATCATTTATAAGGGTGTAGAAACCTTCTCCTATAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGTCCAAAGAGGACAATATCTGCTAACGGTGGATTTGGGTCGTTACAAATGGTATCAGAGCCAGACATCGGACGATGTGCCAGCCTTCTCGCTGTTCCCTGACGGGGGTAGACACAAGGCGGTGTGCCAGTAATGACACTAGACCCAAAGGGGGTAGATTTGGGAGCGGTCTCACATCGATGGGAGGAAGAAAAGAGTGCCAGCGAGGACGCTGGGCCCTGAGAGGGGTGGATTATGATGTCCCACATTGGTTGGGGAAGAGAACAAACCACCATCTTAGAAACCTTACCCTAGCAAACACGTTTTAAAGCTTTGAGGGGAAGCTCGAAAGGGAAAACCCAAAAAGGACAATATCTGCCCGCGGTGGATCTGGGTTTTACTAGTTGTGTTTTTTGCTCTTTCATTTGTTTGGACCATGTTTTGATTGTGGGCCGTTTCCAATAATATGTAATTACTTTGAGGCTAATGTTGAGGGGATTTTAGGGTAGGCGTACAAGAGCTGATATTGTGGATGAGGCTGTGAATTATATTGAACACTTCAGAGGAAAGATCAGCGAGCTTCATGTAAAAAGAGATGCAATAAAGGGGCTGCATTTGGATGAAAGTTCGGATCTTTGTCCCTCAAGTTGCGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGTGATAAGCATCTTTAGAGAGCAAAATTTGGAGCTTTCAGAAGTGATGAGGGTTTTGCTTGAAGAAAGTATTGAAATTACGAGTTGTGCTTCCACCAAAGTGAAGGAAATGATGCTGCACACCATCCACACAAAGGTTTGCATGATTGGCCTCACTTTTTTCTTTCTTTCTAATGTTTAGAGGTTGATTTTGTTATGTTGATTGCTTTTGTTTTTCAGGTAGATGATCCAACGAGGATTGATGTACATGAACTGCAACAAAAACTGTATCGAGTTTGCACTTTTGTGTCATTTGGTGCTTAA

mRNA sequence

ATGCTCTCCCTTCTTACCAACCTTCGATCTTTGCTTCCTCTTCAACTTGTAGAGGGTAGGCGTACAAGAGCTGATATTGTGGATGAGGCTGTGAATTATATTGAACACTTCAGAGGAAAGATCAGCGAGCTTCATGTAAAAAGAGATGCAATAAAGGGGCTGCATTTGGATGAAAGTTCGGATCTTTGTCCCTCAAGTTGCGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGTGATAAGCATCTTTAGAGAGCAAAATTTGGAGCTTTCAGAAGTGATGAGGGTTTTGCTTGAAGAAAGTATTGAAATTACGAGTTGTGCTTCCACCAAAGTGAAGGAAATGATGCTGCACACCATCCACACAAAGGTAGATGATCCAACGAGGATTGATGTACATGAACTGCAACAAAAACTGTATCGAGTTTGCACTTTTGTGTCATTTGGTGCTTAA

Coding sequence (CDS)

ATGCTCTCCCTTCTTACCAACCTTCGATCTTTGCTTCCTCTTCAACTTGTAGAGGGTAGGCGTACAAGAGCTGATATTGTGGATGAGGCTGTGAATTATATTGAACACTTCAGAGGAAAGATCAGCGAGCTTCATGTAAAAAGAGATGCAATAAAGGGGCTGCATTTGGATGAAAGTTCGGATCTTTGTCCCTCAAGTTGCGTTGTAATTAAGCCATATTCAGGTGGGTTGGAGATTGTGATAAGCATCTTTAGAGAGCAAAATTTGGAGCTTTCAGAAGTGATGAGGGTTTTGCTTGAAGAAAGTATTGAAATTACGAGTTGTGCTTCCACCAAAGTGAAGGAAATGATGCTGCACACCATCCACACAAAGGTAGATGATCCAACGAGGATTGATGTACATGAACTGCAACAAAAACTGTATCGAGTTTGCACTTTTGTGTCATTTGGTGCTTAA

Protein sequence

MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESSDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKLYRVCTFVSFGA

Homology

[Close]

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot
Match: Q9LN95 (Transcription factor bHLH55 OS=Arabidopsis thaliana OX=3702 GN=BHLH55 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   SLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS-- 62
           SL   LR LLP Q ++G+R+ AD V EAVNYI+  + KI E+  KRD IK      SS  
Sbjct: 92  SLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRG 151

Query: 63  -----DLCPSSC---------VVIKPYSGGLEIVISIFREQNLELSEVMRVLLEES-IEI 122
                 L  S+C         VV++P   GLEIV+S        LS V+++L +E    I
Sbjct: 152 EFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESCLSSVLQLLAQEQCFNI 211

Query: 123 TSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKLYRVCT 146
            SC ST++ +  +HTI ++V++   +   ELQ+K+ ++ T
Sbjct: 212 VSCISTRLHQGFIHTIASEVEEGIEVYFSELQEKIIKIGT 251

[Close]

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot
Match: Q9STJ7 (Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.0e-13
Identity = 49/148 (33.11%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRD--------AIK 60
           M SL  +LRSLLPL+ ++G+R+ +D V  AVNYI++ +  I +++ KRD        + +
Sbjct: 17  MASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFR 76

Query: 61  GLHLDESSDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTK 120
             +  E +++  S+ VVI+P   G+EIV+SI +      S V++VL E  + +     + 
Sbjct: 77  SSNEQEWNEI--SNHVVIRPCLVGIEIVLSILQ---TPFSSVLQVLREHGLYVLGYICSS 136

Query: 121 VKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           V + ++HT+  +V+D   ID+ +L+  L
Sbjct: 137 VNDRLIHTLQAEVNDLALIDLADLKDTL 159

[Close]

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot
Match: Q9LQ08 (Transcription factor bHLH125 OS=Arabidopsis thaliana OX=3702 GN=BHLH125 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.9e-13
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 0


Query: 3   SLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIK---------- 62
           SL   LR+LLP Q ++G+R+ +D + +AVNYI+  + KI EL+ KR+ +K          
Sbjct: 91  SLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELNEKRNRVKKVISATTTTH 150

Query: 63  --------GLHLDESSDLCPS-SC-------VVIKPYSGGLEIVISIFREQNLE-LSEVM 122
                    L    +S L  S SC       VV+ P   G+EI+IS    +N   LS V+
Sbjct: 151 SAIEECTSSLSSSAASTLSSSCSCVGDKHITVVVTPCLVGVEIIISCCLGRNKSCLSSVL 210

Query: 123 RVLLEES-IEITSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           ++L +E    + SC S + ++  +HTI ++V+D  +I++ EL+ K+
Sbjct: 211 QMLAQEQRFSVVSCLSARRQQRFMHTIVSQVEDGKQINILELKDKI 256

[Close]

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot
Match: Q9STJ6 (Transcription factor bHLH126 OS=Arabidopsis thaliana OX=3702 GN=BHLH126 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 51/154 (33.12%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI-----KGLH 60
           M +L   LR+ LPL+ ++G+R  +D V+ AVN+I+    +I EL  +RD +     +G  
Sbjct: 58  MATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYK 117

Query: 61  LD-----ESSDLCPS--SCVVIKPYSGGLEIVISIFRE--QNLELSEVMRVLLEESIEIT 120
            +       SD+  S  + V+++P+  GLE+V+S      + L LS+V+  + E+ +E+ 
Sbjct: 118 SNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEALPLSKVLETIQEKGLEVM 177

Query: 121 SCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           S  +T+V + ++HTI  +V+    ID+  LQQKL
Sbjct: 178 SSFTTRVNDRLMHTIQVEVNSFGCIDLLWLQQKL 211

[Close]

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 53/157 (33.76%), Postives = 91/157 (57.96%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI----KGLHL 60
           M SL  +LRSLLPL  ++G+R+ +D V+EAVNYI++ + KI EL V+RD +    +G  L
Sbjct: 17  MASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLL 76

Query: 61  DESSD--------LCPSSCVVIKPYSGGLEIVISI-FREQNLELSEVMRVLLEESIEITS 120
             S+         +   + VV++    G+EI++S          S V++VL E  + + +
Sbjct: 77  GSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLN 136

Query: 121 CASTKVKEMMLHTIHTKVDD-PTRIDVHELQQKLYRV 144
             S+ V + +++TI  +V+D    ID+ EL+++L R+
Sbjct: 137 SISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

[Close]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL
Match: A0A6J1EAE1 (transcription factor bHLH118-like OS=Cucurbita moschata OX=3662 GN=LOC111430817 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.3e-76
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 60
           MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS
Sbjct: 53  MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 112

Query: 61  DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 120
           DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT
Sbjct: 113 DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 172

Query: 121 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA
Sbjct: 173 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 203

[Close]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL
Match: A0A6J1JAJ0 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111482745 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.5e-67
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 60
           M SL T+LRSLLPL LVEGRRTRADIVDEAVNYIEH RGKISEL VKRDAIKGLHLDESS
Sbjct: 53  MGSLFTDLRSLLPLPLVEGRRTRADIVDEAVNYIEHLRGKISELQVKRDAIKGLHLDESS 112

Query: 61  DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 120
           DLCPSSCVVIKPYSGGLEI+ISIFREQNLELSEVMRVL+EESIEI SCASTKVKE MLHT
Sbjct: 113 DLCPSSCVVIKPYSGGLEIMISIFREQNLELSEVMRVLVEESIEIMSCASTKVKERMLHT 172

Query: 121 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           IHTKVDDP RIDVHELQQKL++VCT VSFGA
Sbjct: 173 IHTKVDDPKRIDVHELQQKLHQVCTSVSFGA 203

[Close]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL
Match: A0A0A0L9L0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G178580 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.8e-47
Identity = 106/151 (70.20%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI-KGLHLDES 60
           M SLLTNLRSLLPL+ ++GRR+R DIVDEAVNYIE+ RG+++ELHVKRDAI K LHL+ S
Sbjct: 69  MTSLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGRMNELHVKRDAIVKRLHLESS 128

Query: 61  S----DLCPSSCVVIKPYSGGLEIVIS--IFREQNLELSEVMRVLLEESIEITSCASTKV 120
           S    D+  +SCVVIK YSGGLEIVIS  I  EQN +LS VMRVL+E+SIEI +C+STK+
Sbjct: 129 SSCNNDIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSSTKL 188

Query: 121 KEMMLHTIHTKVDDPTRIDVHELQQKLYRVC 145
            E MLHTI TKVDDPT+ID+HEL+QKLY+VC
Sbjct: 189 NERMLHTIQTKVDDPTKIDLHELKQKLYQVC 219

[Close]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL
Match: A0A1S3AY11 (transcription factor bHLH36-like OS=Cucumis melo OX=3656 GN=LOC103484025 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-45
Identity = 104/151 (68.87%), Postives = 126/151 (83.44%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI-KGLHLDES 60
           M SLLTNLRSLLPL+ ++GRR+R DIVDEAVNYIE+ RGKI+ELH+KRDAI K LHL+ S
Sbjct: 68  MASLLTNLRSLLPLEFIKGRRSRVDIVDEAVNYIEYLRGKINELHLKRDAIVKRLHLESS 127

Query: 61  S----DLCPSSCVVIKPYSGGLEIVIS--IFREQNLELSEVMRVLLEESIEITSCASTKV 120
           S    D+  +SCVVIK YSGGLEIVIS  I  EQN +LS VMRVL+E+SIEI +C+STK+
Sbjct: 128 SSCNNDIPSTSCVVIKQYSGGLEIVISNGIISEQNFQLSGVMRVLIEQSIEIETCSSTKL 187

Query: 121 KEMMLHTIHTKVDDPTRIDVHELQQKLYRVC 145
            E ML+TI TKVDD T+ID+HEL+Q+LY+VC
Sbjct: 188 NERMLYTIQTKVDDSTKIDLHELKQRLYQVC 218

[Close]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL
Match: A0A6J1CHG5 (transcription factor bHLH36-like OS=Momordica charantia OX=3673 GN=LOC111011678 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 99/153 (64.71%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDE-- 60
           M SLLTNLRSLLPL+ ++GRR+RAD+V+EAV YIEH +GKISELH+KRDA+K ++LD   
Sbjct: 56  MASLLTNLRSLLPLEFIKGRRSRADLVNEAVRYIEHLKGKISELHIKRDALKRVYLDSLG 115

Query: 61  -SSDLCPSSCVVIKPYSGGLEIVIS-IFREQNLELSEVMRVLLEESIEITSCASTKVKEM 120
             ++   SSCVVI PYSGGLEIVIS  FRE+ L+LS VMRVLL++S  + SCASTKV   
Sbjct: 116 YQNNESSSSCVVINPYSGGLEIVISCCFREEKLKLSGVMRVLLQQSTHVQSCASTKVNGR 175

Query: 121 MLHTIHTKVDDPTRIDVHELQQKLYRVCTFVSF 150
           M HTI +KVD   RID+ ELQ+KLY+VC F SF
Sbjct: 176 MFHTIQSKVDVSRRIDILELQRKLYQVCNFGSF 208

[Close]

BLAST of CmoCh16G001700 vs. NCBI nr
Match: XP_022923000.1 (transcription factor bHLH118-like [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 4.7e-76
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 60
           MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS
Sbjct: 53  MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 112

Query: 61  DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 120
           DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT
Sbjct: 113 DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 172

Query: 121 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA
Sbjct: 173 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 203

[Close]

BLAST of CmoCh16G001700 vs. NCBI nr
Match: KAG6576761.1 (Transcription factor basic helix-loop-helix 118, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHL-DES 60
           MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEH RGK+SELHVKRDAIKGLHL DES
Sbjct: 53  MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHLRGKMSELHVKRDAIKGLHLADES 112

Query: 61  SDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLH 120
           SDLCPSSC+VIKPYS GLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKE MLH
Sbjct: 113 SDLCPSSCIVIKPYSCGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKERMLH 172

Query: 121 TIHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           TIHTKVDDPTRIDVHELQQKLY+VCTFVSFGA
Sbjct: 173 TIHTKVDDPTRIDVHELQQKLYQVCTFVSFGA 204

[Close]

BLAST of CmoCh16G001700 vs. NCBI nr
Match: XP_022984444.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 5.2e-67
Identity = 137/151 (90.73%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS 60
           M SL T+LRSLLPL LVEGRRTRADIVDEAVNYIEH RGKISEL VKRDAIKGLHLDESS
Sbjct: 53  MGSLFTDLRSLLPLPLVEGRRTRADIVDEAVNYIEHLRGKISELQVKRDAIKGLHLDESS 112

Query: 61  DLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLHT 120
           DLCPSSCVVIKPYSGGLEI+ISIFREQNLELSEVMRVL+EESIEI SCASTKVKE MLHT
Sbjct: 113 DLCPSSCVVIKPYSGGLEIMISIFREQNLELSEVMRVLVEESIEIMSCASTKVKERMLHT 172

Query: 121 IHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           IHTKVDDP RIDVHELQQKL++VCT VSFGA
Sbjct: 173 IHTKVDDPKRIDVHELQQKLHQVCTSVSFGA 203

[Close]

BLAST of CmoCh16G001700 vs. NCBI nr
Match: XP_023552832.1 (transcription factor bHLH118-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 141/157 (89.81%), Postives = 146/157 (92.99%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELH-----VKRDAIKGLH 60
           M+SLL+NL SLLPLQLVEGRRTRADIVDEAVNYIEH RGKISELH     VKRDAIKGLH
Sbjct: 39  MVSLLSNLPSLLPLQLVEGRRTRADIVDEAVNYIEHLRGKISELHVKRDAVKRDAIKGLH 98

Query: 61  L-DESSDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVK 120
           L DESSDLCPSSC+VIKPYS GLEIVISIFREQNLELSEVM+VLLEESIEITSCASTKVK
Sbjct: 99  LADESSDLCPSSCIVIKPYSCGLEIVISIFREQNLELSEVMKVLLEESIEITSCASTKVK 158

Query: 121 EMMLHTIHTKVDDPTRIDVHELQQKLYRVCTFVSFGA 152
           E MLHTI TKVDDPTRIDVHELQQKLY+VCTFVSFGA
Sbjct: 159 ERMLHTIQTKVDDPTRIDVHELQQKLYQVCTFVSFGA 195

[Close]

BLAST of CmoCh16G001700 vs. NCBI nr
Match: KAG7014801.1 (Receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 113/141 (80.14%), Postives = 116/141 (82.27%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHL-DES 60
           M+SLLTNLRSLLPLQLVE                      +SELHVKRDAIKGLHL DES
Sbjct: 667 MVSLLTNLRSLLPLQLVE----------------------MSELHVKRDAIKGLHLADES 726

Query: 61  SDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKEMMLH 120
           SDLCPSSC+VIKPYS GLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKE MLH
Sbjct: 727 SDLCPSSCIVIKPYSCGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTKVKERMLH 785

Query: 121 TIHTKVDDPTRIDVHELQQKL 141
           TIHTKVDDPTRIDVHELQQKL
Sbjct: 787 TIHTKVDDPTRIDVHELQQKL 785

[Close]

BLAST of CmoCh16G001700 vs. TAIR 10
Match: AT1G12540.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-17
Identity = 60/160 (37.50%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 3   SLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIKGLHLDESS-- 62
           SL   LR LLP Q ++G+R+ AD V EAVNYI+  + KI E+  KRD IK      SS  
Sbjct: 92  SLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKKIKEVSEKRDRIKRSITHPSSRG 151

Query: 63  -----DLCPSSC---------VVIKPYSGGLEIVISIFREQNLELSEVMRVLLEES-IEI 122
                 L  S+C         VV++P   GLEIV+S        LS V+++L +E    I
Sbjct: 152 EFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSCCNRHESCLSSVLQLLAQEQCFNI 211

Query: 123 TSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKLYRVCT 146
            SC ST++ +  +HTI ++V++   +   ELQ+K+ ++ T
Sbjct: 212 VSCISTRLHQGFIHTIASEVEEGIEVYFSELQEKIIKIGT 251

[Close]

BLAST of CmoCh16G001700 vs. TAIR 10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.4e-14
Identity = 49/148 (33.11%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRD--------AIK 60
           M SL  +LRSLLPL+ ++G+R+ +D V  AVNYI++ +  I +++ KRD        + +
Sbjct: 17  MASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFR 76

Query: 61  GLHLDESSDLCPSSCVVIKPYSGGLEIVISIFREQNLELSEVMRVLLEESIEITSCASTK 120
             +  E +++  S+ VVI+P   G+EIV+SI +      S V++VL E  + +     + 
Sbjct: 77  SSNEQEWNEI--SNHVVIRPCLVGIEIVLSILQ---TPFSSVLQVLREHGLYVLGYICSS 136

Query: 121 VKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           V + ++HT+  +V+D   ID+ +L+  L
Sbjct: 137 VNDRLIHTLQAEVNDLALIDLADLKDTL 159

[Close]

BLAST of CmoCh16G001700 vs. TAIR 10
Match: AT1G62975.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.1e-14
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 0


Query: 3   SLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAIK---------- 62
           SL   LR+LLP Q ++G+R+ +D + +AVNYI+  + KI EL+ KR+ +K          
Sbjct: 91  SLFKRLRTLLPFQYIQGKRSTSDHIVQAVNYIKDLQIKIKELNEKRNRVKKVISATTTTH 150

Query: 63  --------GLHLDESSDLCPS-SC-------VVIKPYSGGLEIVISIFREQNLE-LSEVM 122
                    L    +S L  S SC       VV+ P   G+EI+IS    +N   LS V+
Sbjct: 151 SAIEECTSSLSSSAASTLSSSCSCVGDKHITVVVTPCLVGVEIIISCCLGRNKSCLSSVL 210

Query: 123 RVLLEES-IEITSCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           ++L +E    + SC S + ++  +HTI ++V+D  +I++ EL+ K+
Sbjct: 211 QMLAQEQRFSVVSCLSARRQQRFMHTIVSQVEDGKQINILELKDKI 256

[Close]

BLAST of CmoCh16G001700 vs. TAIR 10
Match: AT4G25410.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-13
Identity = 51/154 (33.12%), Postives = 89/154 (57.79%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI-----KGLH 60
           M +L   LR+ LPL+ ++G+R  +D V+ AVN+I+    +I EL  +RD +     +G  
Sbjct: 58  MATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRDELSRETGQGYK 117

Query: 61  LD-----ESSDLCPS--SCVVIKPYSGGLEIVISIFRE--QNLELSEVMRVLLEESIEIT 120
            +       SD+  S  + V+++P+  GLE+V+S      + L LS+V+  + E+ +E+ 
Sbjct: 118 SNPDPGKTGSDVGKSEPATVMVQPHVSGLEVVVSSNSSGPEALPLSKVLETIQEKGLEVM 177

Query: 121 SCASTKVKEMMLHTIHTKVDDPTRIDVHELQQKL 141
           S  +T+V + ++HTI  +V+    ID+  LQQKL
Sbjct: 178 SSFTTRVNDRLMHTIQVEVNSFGCIDLLWLQQKL 211

[Close]

BLAST of CmoCh16G001700 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 53/157 (33.76%), Postives = 91/157 (57.96%), Query Frame = 0


Query: 1   MLSLLTNLRSLLPLQLVEGRRTRADIVDEAVNYIEHFRGKISELHVKRDAI----KGLHL 60
           M SL  +LRSLLPL  ++G+R+ +D V+EAVNYI++ + KI EL V+RD +    +G  L
Sbjct: 17  MASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLL 76

Query: 61  DESSD--------LCPSSCVVIKPYSGGLEIVISI-FREQNLELSEVMRVLLEESIEITS 120
             S+         +   + VV++    G+EI++S          S V++VL E  + + +
Sbjct: 77  GSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFSSVLQVLSEYGLCLLN 136

Query: 121 CASTKVKEMMLHTIHTKVDD-PTRIDVHELQQKLYRV 144
             S+ V + +++TI  +V+D    ID+ EL+++L R+
Sbjct: 137 SISSIVDDRLVYTIQAEVNDMALMIDLAELEKRLIRM 173

The following BLAST results are available for this feature:

BLAST of CmoCh16G001700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LN95	3.3e-16	37.50	Transcription factor bHLH55 OS=Arabidopsis thaliana OX=3702 GN=BHLH55 PE=2 SV=1	[more]
Q9STJ7	2.0e-13	33.11	Transcription factor bHLH118 OS=Arabidopsis thaliana OX=3702 GN=BHLH118 PE=2 SV=...	[more]
Q9LQ08	9.9e-13	33.13	Transcription factor bHLH125 OS=Arabidopsis thaliana OX=3702 GN=BHLH125 PE=2 SV=...	[more]
Q9STJ6	2.2e-12	33.12	Transcription factor bHLH126 OS=Arabidopsis thaliana OX=3702 GN=BHLH126 PE=2 SV=...	[more]
Q9FLI1	2.4e-11	33.76	Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1	[more]

BLAST of CmoCh16G001700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAE1	2.3e-76	100.00	transcription factor bHLH118-like OS=Cucurbita moschata OX=3662 GN=LOC111430817 ...	[more]
A0A6J1JAJ0	2.5e-67	90.73	transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111482745 PE...	[more]
A0A0A0L9L0	3.8e-47	70.20	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G178580 PE=4 S...	[more]
A0A1S3AY11	1.6e-45	68.87	transcription factor bHLH36-like OS=Cucumis melo OX=3656 GN=LOC103484025 PE=4 SV...	[more]
A0A6J1CHG5	1.9e-43	64.71	transcription factor bHLH36-like OS=Momordica charantia OX=3673 GN=LOC111011678 ...	[more]

BLAST of CmoCh16G001700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923000.1	4.7e-76	100.00	transcription factor bHLH118-like [Cucurbita moschata]	[more]
KAG6576761.1	2.6e-71	95.39	Transcription factor basic helix-loop-helix 118, partial [Cucurbita argyrosperma...	[more]
XP_022984444.1	5.2e-67	90.73	transcription factor bHLH118-like [Cucurbita maxima]	[more]
XP_023552832.1	6.7e-67	89.81	transcription factor bHLH118-like [Cucurbita pepo subsp. pepo]	[more]
KAG7014801.1	1.2e-47	80.14	Receptor-like serine/threonine-protein kinase, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmoCh16G001700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12540.1	2.3e-17	37.50	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25400.1	1.4e-14	33.11	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G62975.1	7.1e-14	33.13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G25410.1	1.6e-13	33.12	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G51780.1	1.7e-12	33.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 3..144
None	No IPR available	PANTHER	PTHR13935:SF134	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	coord: 3..144
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 4..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G001700.1	CmoCh16G001700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity