CmoCh16G000590 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCTTTATACCTTTTTCTGGCTGCTCTGTTTCTCTTCTGAAAAAACATTTGAAGCGAGTTTCTTCGATTCCGGTTTCATTGTGCAACCAAAAATGTTCGCGGATAACGGGGTTTTCTTTCCTCACTTCCAGAACTTCTCTCAGGTCCAACAGCTCGAGGAGTTTTGCAAAACCCAGCAGCCATGTTCTTCTCCAATGGTACTACTACTACTTTCCTCCATCTCTCTGTTCTTGCTTATTGCTCTTTCTCGGTTGTATGCTCTGCATTTTCTTTGCGCCTGGTTTGATTCATTTTTTTAAGCTGATTTGCTAAGATTTTTCAGTTTTGGGTATTGGGTGTTGTTCATTTTGCACTTTTCCATGGATATTAGTTCTGCTCTGCTTTTTATTGAAAACTAGGTTTCATGGCAAACTTGTGTTAATTTGGTTAGTAGGAAAGAAGGTGGGGGAAATCTTTGTGAGACATGTTTTGTGAAGTGCAAAATGGTGCATGAGTGGAATGAATGTGAAGGGAACGGCGATAAGGGAATTCTTTTTCTCACTTTTTGCTTTCGTCAACAACATTTTGTAATGCCTATGTGATGCTTCTGCTTTACATGCTGGATGTCAAAAAACAAATATGGGTATAAATAGAAAAGGAACATAATGGCCTTCAAACTCTTCTTTTTCACTCTTGGGTTTCGTGTTCTACACAGTCATTCTTCCATTTTCTGTTCCATTCTGTTGTCTAAACTACTTGCTGGGATCTTACTTTCTAACCGCATTTGCACTCCTGCTGTTTGTGAAAATGCTTCAAACGGAATAAAACTAAATCAGCCCCAAATTTGATCGATTTACACTTACTAAGCCTCATATTCTGTTATCCATTCGTCCTGTGGTTTGAATTCTGTGGATTTCTTGATAGCTTTTTGATTGCATCGTCATAGCTTAAATTTATGAACGTGTTTAAAATATAATGCAGATATCCACCATCTGTGAATATGATATGGGTGGTGAAGGAGATCTCTTTGAAGCCCCACAACCACAACCATTTGTTGAAGAAACCTTCATGGGTCTTGATCCTGTGATGGCAGCCATTTCAATGATATCTTGTGCTGAAGAAGTCATCTCTCCAGAAGGACTAGAAGTTGCAGACTTCCAATCGCTTCAAAATGACCAGCTCTTAAATGAGGTCTACTATGAGTGTGAAAAGGATCTTTTGGAGAAAGCAGCTCTAGAAAGACCACTGCCTGATGTCCTGAACATTGAAATCCCAGTTCTGAACCCAGAAGACAATCAAATTCCAGAAAACAAGTCATTCCCTGATGCCTCAATCCAGAAAAGTTCCAGCTTGGGGTGCTTGAACTCGATGGATTTGGTGCAAGGACCTACCATCAAACCGTGTTTTATAGATTTCCCAGACATGGACTTCAGTTCTGTTTACGGTATGAGGAGGGCATTTAGTGAAGGAGATATTAAGGTTAGGTCTATGCATCTTGTAATCTGATTTTCACTCATCTTCTCCTTAAACAATCCATTTGTTGCGTGCATAAGGAAACTTCATATACAACAATGGTAGATGCTTAATATTTGGATTTGTTTGGCAGACACTCGGCAGTGACAAGATAGGCATGATCCATTCCCCCCTCCACCGCCCTGTGTTCAGCAATTGCACCAGTGAGGAACGCCTAGAAAAGCTTTCCCGATACAGGACAAAGAGGACAAAGAGGAATTTTGGGAGAAAGATCAAGGTAAACAACAACCCTGTGAAGCACTCCCACTATGCTTGTTTTTGCATGCACTCCACATATTTTGGCTCATACAGTTCTGAACTTTGTGAATTCTTCAAAATTCATTGTATGCTCTGGTTTTCAGTATGCTTGCAGGAAGGCTCTTGCAGACAGTCAACCTAGGATACGCGGACGGTTTGCGAAGACCGACGAATCTGAAGTTAAAGGCAGTAGCTCAATCTCAATGCTTGTCCTATGAAGAAATGAAAGTACAATCTCAATGCTTGTCCTATGAAGAAATGAAAGTAAAAAAGTAATCTAGGAATGAAAAGGTAGTTGTGATGAGTGGGTGGGAGAGCTTAGCAGAAGCCTGGGAAATAAAGGTGTTTTGTCGTCTATGATTTGTGTTAGTATCTTCAACAGACTACAATGGTTGGCTAGATTTGTACATACTGTATCCCTTGAATAAAATAGGAAATAAAAGTTCTTCTACTTTGTTTATTAACTTTGTGAGATGGGCGTGGTGCTGACTGGTAGAATGGGCTTTAGCCTAAATGCCAAGTGACTGAATTCATTGACTGGGCACTAGAGTCTCACAAATTCATCCAATCTTTCTTGAAATGACTTATTTTCTGC TTCTCTTTATACCTTTTTCTGGCTGCTCTGTTTCTCTTCTGAAAAAACATTTGAAGCGAGTTTCTTCGATTCCGGTTTCATTGTGCAACCAAAAATGTTCGCGGATAACGGGGTTTTCTTTCCTCACTTCCAGAACTTCTCTCAGGTCCAACAGCTCGAGGAGTTTTGCAAAACCCAGCAGCCATGTTCTTCTCCAATGATATCCACCATCTGTGAATATGATATGGGTGGTGAAGGAGATCTCTTTGAAGCCCCACAACCACAACCATTTGTTGAAGAAACCTTCATGGGTCTTGATCCTGTGATGGCAGCCATTTCAATGATATCTTGTGCTGAAGAAGTCATCTCTCCAGAAGGACTAGAAGTTGCAGACTTCCAATCGCTTCAAAATGACCAGCTCTTAAATGAGGTCTACTATGAGTGTGAAAAGGATCTTTTGGAGAAAGCAGCTCTAGAAAGACCACTGCCTGATGTCCTGAACATTGAAATCCCAGTTCTGAACCCAGAAGACAATCAAATTCCAGAAAACAAGTCATTCCCTGATGCCTCAATCCAGAAAAGTTCCAGCTTGGGGTGCTTGAACTCGATGGATTTGGTGCAAGGACCTACCATCAAACCGTGTTTTATAGATTTCCCAGACATGGACTTCAGTTCTGTTTACGGTATGAGGAGGGCATTTAGTGAAGGAGATATTAAGACACTCGGCAGTGACAAGATAGGCATGATCCATTCCCCCCTCCACCGCCCTGTGTTCAGCAATTGCACCAGTGAGGAACGCCTAGAAAAGCTTTCCCGATACAGGACAAAGAGGACAAAGAGGAATTTTGGGAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGTCAACCTAGGATACGCGGACGGTTTGCGAAGACCGACGAATCTGAAGTTAAAGGCAGTAGCTCAATCTCAATGCTTGTCCTATGAAGAAATGAAAGTACAATCTCAATGCTTGTCCTATGAAGAAATGAAAGTAAAAAAGTAATCTAGGAATGAAAAGGTAGTTGTGATGAGTGGGTGGGAGAGCTTAGCAGAAGCCTGGGAAATAAAGGTGTTTTGTCGTCTATGATTTGTGTTAGTATCTTCAACAGACTACAATGGTTGGCTAGATTTGTACATACTGTATCCCTTGAATAAAATAGGAAATAAAAGTTCTTCTACTTTGTTTATTAACTTTGTGAGATGGGCGTGGTGCTGACTGGTAGAATGGGCTTTAGCCTAAATGCCAAGTGACTGAATTCATTGACTGGGCACTAGAGTCTCACAAATTCATCCAATCTTTCTTGAAATGACTTATTTTCTGC ATGTTCGCGGATAACGGGGTTTTCTTTCCTCACTTCCAGAACTTCTCTCAGGTCCAACAGCTCGAGGAGTTTTGCAAAACCCAGCAGCCATGTTCTTCTCCAATGATATCCACCATCTGTGAATATGATATGGGTGGTGAAGGAGATCTCTTTGAAGCCCCACAACCACAACCATTTGTTGAAGAAACCTTCATGGGTCTTGATCCTGTGATGGCAGCCATTTCAATGATATCTTGTGCTGAAGAAGTCATCTCTCCAGAAGGACTAGAAGTTGCAGACTTCCAATCGCTTCAAAATGACCAGCTCTTAAATGAGGTCTACTATGAGTGTGAAAAGGATCTTTTGGAGAAAGCAGCTCTAGAAAGACCACTGCCTGATGTCCTGAACATTGAAATCCCAGTTCTGAACCCAGAAGACAATCAAATTCCAGAAAACAAGTCATTCCCTGATGCCTCAATCCAGAAAAGTTCCAGCTTGGGGTGCTTGAACTCGATGGATTTGGTGCAAGGACCTACCATCAAACCGTGTTTTATAGATTTCCCAGACATGGACTTCAGTTCTGTTTACGGTATGAGGAGGGCATTTAGTGAAGGAGATATTAAGACACTCGGCAGTGACAAGATAGGCATGATCCATTCCCCCCTCCACCGCCCTGTGTTCAGCAATTGCACCAGTGAGGAACGCCTAGAAAAGCTTTCCCGATACAGGACAAAGAGGACAAAGAGGAATTTTGGGAGAAAGATCAAGTATGCTTGCAGGAAGGCTCTTGCAGACAGTCAACCTAGGATACGCGGACGGTTTGCGAAGACCGACGAATCTGAAGTTAAAGGCAGTAGCTCAATCTCAATGCTTGTCCTATGA MFADNGVFFPHFQNFSQVQQLEEFCKTQQPCSSPMISTICEYDMGGEGDLFEAPQPQPFVEETFMGLDPVMAAISMISCAEEVISPEGLEVADFQSLQNDQLLNEVYYECEKDLLEKAALERPLPDVLNIEIPVLNPEDNQIPENKSFPDASIQKSSSLGCLNSMDLVQGPTIKPCFIDFPDMDFSSVYGMRRAFSEGDIKTLGSDKIGMIHSPLHRPVFSNCTSEERLEKLSRYRTKRTKRNFGRKIKYACRKALADSQPRIRGRFAKTDESEVKGSSSISMLVL Homology
BLAST of CmoCh16G000590 vs. ExPASy Swiss-Prot
Match: O82117 (Zinc finger protein CO3 OS=Oryza sativa subsp. japonica OX=39947 GN=CO3 PE=2 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 1.8e-07 Identity = 42/126 (33.33%), Postives = 66/126 (52.38%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 1.0e-05 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy Swiss-Prot
Match: Q940T9 (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=COL4 PE=2 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy Swiss-Prot
Match: E5RQA1 (Transcription factor GHD7 OS=Oryza sativa subsp. japonica OX=39947 GN=GHD7 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05 Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy Swiss-Prot
Match: O23379 (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana OX=3702 GN=COL11 PE=1 SV=2) HSP 1 Score: 50.8 bits (120), Expect = 2.9e-05 Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy TrEMBL
Match: A0A6J1E5A1 (uncharacterized protein LOC111430881 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430881 PE=4 SV=1) HSP 1 Score: 574.7 bits (1480), Expect = 2.1e-160 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy TrEMBL
Match: A0A6J1J936 (uncharacterized protein LOC111482856 OS=Cucurbita maxima OX=3661 GN=LOC111482856 PE=4 SV=1) HSP 1 Score: 557.0 bits (1434), Expect = 4.6e-155 Identity = 278/286 (97.20%), Postives = 280/286 (97.90%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy TrEMBL
Match: A0A1S3CS26 (uncharacterized protein LOC103504133 OS=Cucumis melo OX=3656 GN=LOC103504133 PE=4 SV=1) HSP 1 Score: 522.3 bits (1344), Expect = 1.3e-144 Identity = 260/286 (90.91%), Postives = 273/286 (95.45%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy TrEMBL
Match: A0A0A0LC99 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G247880 PE=4 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138 Identity = 250/286 (87.41%), Postives = 268/286 (93.71%), Query Frame = 0
BLAST of CmoCh16G000590 vs. ExPASy TrEMBL
Match: A0A6J1HWG4 (putative zinc finger protein CONSTANS-LIKE 11 OS=Cucurbita maxima OX=3661 GN=LOC111467478 PE=4 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 3.1e-135 Identity = 245/286 (85.66%), Postives = 261/286 (91.26%), Query Frame = 0
BLAST of CmoCh16G000590 vs. NCBI nr
Match: XP_022923117.1 (uncharacterized protein LOC111430881 isoform X1 [Cucurbita moschata] >XP_022923118.1 uncharacterized protein LOC111430881 isoform X2 [Cucurbita moschata]) HSP 1 Score: 574.7 bits (1480), Expect = 4.4e-160 Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0
BLAST of CmoCh16G000590 vs. NCBI nr
Match: KAG6576657.1 (Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014707.1 Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 561.2 bits (1445), Expect = 5.1e-156 Identity = 279/286 (97.55%), Postives = 280/286 (97.90%), Query Frame = 0
BLAST of CmoCh16G000590 vs. NCBI nr
Match: XP_023553012.1 (uncharacterized protein LOC111810531 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 559.3 bits (1440), Expect = 1.9e-155 Identity = 279/286 (97.55%), Postives = 279/286 (97.55%), Query Frame = 0
BLAST of CmoCh16G000590 vs. NCBI nr
Match: XP_022984625.1 (uncharacterized protein LOC111482856 [Cucurbita maxima]) HSP 1 Score: 557.0 bits (1434), Expect = 9.5e-155 Identity = 278/286 (97.20%), Postives = 280/286 (97.90%), Query Frame = 0
BLAST of CmoCh16G000590 vs. NCBI nr
Match: XP_038906990.1 (uncharacterized protein LOC120092834 [Benincasa hispida]) HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144 Identity = 262/286 (91.61%), Postives = 272/286 (95.10%), Query Frame = 0
BLAST of CmoCh16G000590 vs. TAIR 10
Match: AT5G53420.1 (CCT motif family protein ) HSP 1 Score: 216.5 bits (550), Expect = 2.8e-56 Identity = 139/282 (49.29%), Postives = 186/282 (65.96%), Query Frame = 0
BLAST of CmoCh16G000590 vs. TAIR 10
Match: AT4G27900.1 (CCT motif family protein ) HSP 1 Score: 206.8 bits (525), Expect = 2.3e-53 Identity = 131/282 (46.45%), Postives = 180/282 (63.83%), Query Frame = 0
BLAST of CmoCh16G000590 vs. TAIR 10
Match: AT4G27900.2 (CCT motif family protein ) HSP 1 Score: 206.8 bits (525), Expect = 2.3e-53 Identity = 131/282 (46.45%), Postives = 180/282 (63.83%), Query Frame = 0
BLAST of CmoCh16G000590 vs. TAIR 10
Match: AT5G53420.2 (CCT motif family protein ) HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43 Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 0
BLAST of CmoCh16G000590 vs. TAIR 10
Match: AT5G53420.3 (CCT motif family protein ) HSP 1 Score: 125.6 bits (314), Expect = 6.6e-29 Identity = 90/211 (42.65%), Postives = 126/211 (59.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|