CmoCh16G000380 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G000380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1
LocationCmo_Chr16: 169370 .. 172339 (-)
RNA-Seq ExpressionCmoCh16G000380
SyntenyCmoCh16G000380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCAGCGACGAAAAGAAGTCGGCTTACTTATAGATTACAGTTCATTGTTATTTTCCTTCATTTTTCAATTTAAAACTATGTTCCAAAGCTGTGCATTTTCTCTGAGAAGAGTTTTTCTTTACTGCAATGTGATCAGGTAGAGAATAAACTGCATTCTCGAGCTGACATGATGCATTGAGTTTGGAGACTACCGAATGCTGTAAATTGGAGTATTCATTTTTTAGATCTTTGGTGGTTTCTTGCACCATCGCTCTAGACATAGGATTCACAACACTTTTCCGCCCTAGCCCTATATTGGAAATGCTTTCCCTCTGGGCATGTATAGATGCAATTCCAATTGTGGAGTCACTACTGAAGGCCAACTGATTAGCCCTATATTGGGTTTGTCGTTATGATTGCAAGGAGCTTTGGCAATTGCTGCTAAGACTTAAGCTTGGCTTGATATTGATTTGTTGCTTGTGGCCTTTTTCTACTGGTGAGTGATTGGGTTGATTTGGGGCTCGAGAAAACGTATATGCAGAATTGAATTGCAACATGATTCTGGTGTACCAGAAATAGACAATGGGAGTGTAAGTAATAGGAACGAACTTCATATCAGAGCTTGTTGTTGCTGCTGTTGCATTTATGGTGAGGAAATTTATGCACACAAAACCTGGTTGTCTGTCTTATGAAGAGGACATTTTTCTGTAATAATGGAGGAAGTCTTTGCTTCCAGCTTAGAGACAGAAGGTGGGAAAGGTTATAGAATCCGCATTGTTGTTGATTTCTTTAAGAAATATTCCTTACAAATTAAGCAATAGAAATGGGGATTCAAACCAAAGGCTTGTTTTAACTTCACTCTCAATCCCGAGTGATAACTGGAATAGGGCTAACATTTTAACTGTTTTAACTGTTTGGACTAAGTTAAAAAAAAAAAAAAACCTGGAATAGGGCTATACAAGTGATAACTTAGAAGAGGACATCTTTCTTGAAATTTTGAGGAGATGGGTTATTTATCCAAAAAATCCTACGCTTCGAAAAAAAACTCGTCGTCTCCTCTGTAAATATCATCCGAAGGTGAAGATAGGACAGCGATGACTACTCCAATCCCGACACTCTCCTTTGCTTCACCTGTAATCACTCTCTCTCTCTTTGGCTCTTCGGCAAATTAATGGCGGAATCTCGAATATGAATATTCTGTTTTATGCTTTTGTTGATCTTTCTATCTTTAGCTTCTCTTTCAAATACATCAAATTTTGCTTATGTTGCCCATTTTTTCTAGTTGTTTCAGAGGATACAGACGAGGGCGGGACTTTCTCATGGATTTAACTTTCCTTCGCGGTTACAGGTTAGGATTCGAGAGATTCTCTCAACATCAAAGTTAAACATGCTCTCTTCGGCCCTTATTGTTCATGTCTTGTTGTTTTAAGCTTTCAGGTGGCCGCCAGAAAGCAAAGAGATGGTGAGGGTGTCGGTCGGCGAGTGTGGCGACGAAGAAAATTGGTATGGAGAACGTGCTTGTTCTTTCTCTAAATTTCTCCCTTGCACCTATGTCTTTTATCTCATTCGTTTTCCGTTTCGTGTCACTCTCCTTATCTGTGATTTTATTCCTTTGCGTTTACATGAGTTACGTTCTTCAAATTTAGATGTTTAGGGTAGTTCTACGACGAAGATTTTGGGTAGTAGATGGTAGGTTCTACGAGACAAGCACCTGTAGAAAACTGAAACACTGCGAGTCTACCTTACAATAAAGAAGAAGAAATGGAAGCATTGCAATGTGCTAAATTGATCTATATTTTCTTGTGTAACAGTAGCCAACTTTTCTAAAGGCCCTCTAGGTTGTTCTCTTTTCATGTTTTTGAATCTATGGTTTCTTCTACTAAAACAACAATTTTTTTTTGTAGCATTCAATTTCATGTACCACATTTTCGTATCAATTTTTTTTGTTCTACTTCAGTTAGAACATTATTCATCTATTGGATTCCACACTCTCTTTTCTATTTTAGCTCTTTGTTTAACAAACATTGAGAATTTAATCATTGTTTCTGCAATATTTTCTCATCTTTTCTTTTTTATTTTTTTTCTCTAACACTTTGCTATCCGGTATAGTTTGTCCTCTTCAGTTTACAACACTGATGTGTAAAGTTAGGGAAAAACTAATCTGTATTTGGTGCTTTTTACGACGATTATTGGAGATGTTATGCTTGTTATAGCTTCTGTTTTGAGTAATGAAACTCAATGCATGGTTTTTTATCGCTGACTATTTAAATGTGGATGTCAGAATGATTCCGTTTTCCAATCGATCAAACTTGATAATTAATCTCGATTAGGACACAAGCACCATGGGTACTTAAGTTGAGAACATTCGTAGAGAATGTGGGATTATAGGTTCATGGTGGTATAGGATATACAACTGCTACAAGTTTCTTAGTAACCATACATGTAGATCAGGCAGTTGTCTAAATGAAATTAGGTGAGATGTGTAAATTGGCCTAGATACAATGATGTAGGATTGAAGCTTGTAATCGTTTATGATGTAGAACATCTTCGCTGAGATGAGAATTAGTCATAATCACTCATCATCATTTTGGCAGACTTCTATATGTTGTTCTCATTGACATTGAAACATTGAATCTGATTCATTGTGCAGACGAAGAAGGATGACATGTCGATCTTCAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTCGTGAACGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGATGAATATGGGGGTTCCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTATCTCAAACAAGAATTTACTTGA

mRNA sequence

ATGTGTTCAGCGACGAAAAGAAGTCGGCTTACTTATAGATTACAGTTCATTAGGATACAGACGAGGGCGGGACTTTCTCATGGATTTAACTTTCCTTCGCGGTTACAGGTGGCCGCCAGAAAGCAAAGAGATGGTGAGGGTGTCGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGACATGTCGATCTTCAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTCGTGAACGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGATGAATATGGGGGTTCCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTATCTCAAACAAGAATTTACTTGA

Coding sequence (CDS)

ATGTGTTCAGCGACGAAAAGAAGTCGGCTTACTTATAGATTACAGTTCATTAGGATACAGACGAGGGCGGGACTTTCTCATGGATTTAACTTTCCTTCGCGGTTACAGGTGGCCGCCAGAAAGCAAAGAGATGGTGAGGGTGTCGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGACATGTCGATCTTCAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTCGTGAACGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGATGAATATGGGGGTTCCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTATCTCAAACAAGAATTTACTTGA

Protein sequence

MCSATKRSRLTYRLQFIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Homology
[Close]
BLAST of CmoCh16G000380 vs. ExPASy Swiss-Prot
Match: Q8VZV9 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana OX=3702 GN=PTAC7 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.4e-47
Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = 0 

Query: 19  IQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQ 78
           I TR+G         + QV+   QRD    GRRVWRRR LTKKDDM  +KM R+PF+EEQ
Sbjct: 16  IDTRSG---NLRCTFQSQVSCGIQRDDN--GRRVWRRRTLTKKDDMLRYKMQRVPFVEEQ 75

Query: 79  VRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSN 138
           VRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSN
Sbjct: 76  VRKIREVGKVMTMDIEQLLLREDNRFEFVNSVAAEATEYVDKNRDEYGGSKKAIFHVLSN 135

Query: 139 RVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           RVND GF RP+AY E DP+KPGP YL + +T
Sbjct: 136 RVNDLGFDRPEAYVEADPYKPGPGYLLEYYT 161

[Close]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match: A0A6J1E559 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430856 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 16  FIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 75
           F RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL
Sbjct: 15  FQRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 74

Query: 76  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 135
           EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV
Sbjct: 75  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 134

Query: 136 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 135 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match: A0A6J1E8L1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430856 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.4e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 18  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 77
           RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE
Sbjct: 14  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 73

Query: 78  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 137
           QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS
Sbjct: 74  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 133

Query: 138 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 134 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165

[Close]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match: A0A6J1J5H1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482787 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0 

Query: 16  FIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 75
           F RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFL
Sbjct: 15  FQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDEMSIFKMDRIPFL 74

Query: 76  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 135
           EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV
Sbjct: 75  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 134

Query: 136 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 135 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match: A0A6J1J2D6 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482787 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.7e-78
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 18  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 77
           RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFLEE
Sbjct: 14  RIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDEMSIFKMDRIPFLEE 73

Query: 78  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 137
           QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS
Sbjct: 74  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 133

Query: 138 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 134 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165

[Close]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match: A0A6J1E563 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430858 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 5.3e-74
Identity = 142/152 (93.42%), Postives = 147/152 (96.71%), Query Frame = 0 

Query: 18  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 77
           RI+ R G+SHGFN P RLQVAARKQ +GEGVGRRVWRRRKLTKKD+MSIFKM+RIPFLEE
Sbjct: 16  RIEVRVGISHGFNSPPRLQVAARKQGNGEGVGRRVWRRRKLTKKDEMSIFKMNRIPFLEE 75

Query: 78  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 137
           QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS
Sbjct: 76  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 135

Query: 138 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 136 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 167

[Close]
BLAST of CmoCh16G000380 vs. NCBI nr
Match: XP_022923077.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0 

Query: 16  FIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 75
           F RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL
Sbjct: 15  FQRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 74

Query: 76  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 135
           EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV
Sbjct: 75  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 134

Query: 136 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 135 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of CmoCh16G000380 vs. NCBI nr
Match: XP_022923078.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 305.4 bits (781), Expect = 3.0e-79
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 18  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 77
           RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE
Sbjct: 14  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 73

Query: 78  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 137
           QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS
Sbjct: 74  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 133

Query: 138 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 134 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165

[Close]
BLAST of CmoCh16G000380 vs. NCBI nr
Match: KAG7014690.1 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 8.6e-79
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 0 

Query: 16  FIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 75
           F RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL
Sbjct: 15  FQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 74

Query: 76  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 135
           EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV
Sbjct: 75  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 134

Query: 136 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 135 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of CmoCh16G000380 vs. NCBI nr
Match: KAG6576638.1 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 18  RIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 77
           RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE
Sbjct: 14  RIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEE 73

Query: 78  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 137
           QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS
Sbjct: 74  QVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLS 133

Query: 138 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 134 NRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 165

[Close]
BLAST of CmoCh16G000380 vs. NCBI nr
Match: XP_022984516.1 (protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 302.4 bits (773), Expect = 2.5e-78
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0 

Query: 16  FIRIQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFL 75
           F RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFL
Sbjct: 15  FQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDEMSIFKMDRIPFL 74

Query: 76  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 135
           EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV
Sbjct: 75  EEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHV 134

Query: 136 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Sbjct: 135 LSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 168

[Close]
BLAST of CmoCh16G000380 vs. TAIR 10
Match: AT5G24314.1 (plastid transcriptionally active7 )

HSP 1 Score: 190.7 bits (483), Expect = 9.9e-49
Identity = 99/151 (65.56%), Postives = 116/151 (76.82%), Query Frame = 0 

Query: 19  IQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQ 78
           I TR+G         + QV+   QRD    GRRVWRRR LTKKDDM  +KM R+PF+EEQ
Sbjct: 16  IDTRSG---NLRCTFQSQVSCGIQRDDN--GRRVWRRRTLTKKDDMLRYKMQRVPFVEEQ 75

Query: 79  VRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSN 138
           VRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSN
Sbjct: 76  VRKIREVGKVMTMDIEQLLLREDNRFEFVNSVAAEATEYVDKNRDEYGGSKKAIFHVLSN 135

Query: 139 RVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           RVND GF RP+AY E DP+KPGP YL + +T
Sbjct: 136 RVNDLGFDRPEAYVEADPYKPGPGYLLEYYT 161

[Close]
BLAST of CmoCh16G000380 vs. TAIR 10
Match: AT5G24314.2 (plastid transcriptionally active7 )

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 99/159 (62.26%), Postives = 116/159 (72.96%), Query Frame = 0 

Query: 19  IQTRAGLSHGFNFPSRLQVAARKQRDGEGVGRRVWRRRK--------LTKKDDMSIFKMD 78
           I TR+G         + QV+   QRD    GRRVWRRR         LTKKDDM  +KM 
Sbjct: 16  IDTRSG---NLRCTFQSQVSCGIQRDDN--GRRVWRRRTLVSTKLDILTKKDDMLRYKMQ 75

Query: 79  RIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVENNRDEYGGSKK 138
           R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKK
Sbjct: 76  RVPFVEEQVRKIREVGKVMTMDIEQLLLREDNRFEFVNSVAAEATEYVDKNRDEYGGSKK 135

Query: 139 AILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT 170
           AI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Sbjct: 136 AIFHVLSNRVNDLGFDRPEAYVEADPYKPGPGYLLEYYT 169

The following BLAST results are available for this feature:
BLAST of CmoCh16G000380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZV91.4e-4765.56Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 OS=Arabidopsis thaliana OX=3702 GN=PT... [more]
BLAST of CmoCh16G000380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E5596.4e-8099.35protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita moschata... [more]
A0A6J1E8L11.4e-79100.00protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 OS=Cucurbita moschata... [more]
A0A6J1J5H11.2e-7897.40protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1J2D62.7e-7898.03protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 OS=Cucurbita maxima O... [more]
A0A6J1E5635.3e-7493.42protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 OS=Cucurbita moschata... [more]
BLAST of CmoCh16G000380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923077.11.3e-7999.35protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata][more]
XP_022923078.13.0e-79100.00protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2 [Cucurbita moschata][more]
KAG7014690.18.6e-7998.05Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyro... [more]
KAG6576638.11.9e-7898.68Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subs... [more]
XP_022984516.12.5e-7897.40protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima][more]
BLAST of CmoCh16G000380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24314.19.9e-4965.56plastid transcriptionally active7 [more]
AT5G24314.21.6e-4662.26plastid transcriptionally active7 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038958Protein plastid transcriptionally active 7PANTHERPTHR37257PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 7coord: 19..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000380.1CmoCh16G000380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042793 plastid transcription
cellular_component GO:0000427 plastid-encoded plastid RNA polymerase complex
molecular_function GO:0003723 RNA binding