CmoCh16G000280 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGTTAGCTAGGGGATAAGCATGCAGTGTAGTGCTTTTTGACACTAACCAAGCCTTTATAGCAAAAGCGTTTCAACAAGAAGGAAAAAATGCTGTAGAGGGTTGTGGTCTCCTTAGTTTTGAAGCTGAAAAGGGAAAATGGATGCAGATAAGCACTAGGGATGGACTGGAAAAAGCCACACGTTAGCGAACTCCATTGGTCTTCCATGCAGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTATATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGAGCATTTTCATCAGTTGATGAGTAAACAATATGCTGCCATTTGAAACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTGGCTAAACTTGAGGGGATTCCAAGTATACTAAAGATTGGCTCCTAAATATTGGTCTTATTACTACCAGGTGGAAGATTACCATCTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATTGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGGCGTAGTTGAATTACGAAATAAACAGATATAAGAACACTATAGGAAGTTCATCACTCGCCTGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTCGGTACGCAAGCTTTTGAAGGTGACACCCAATTGGGGTAATTCATGTCTATTTTTTATGCATGATGTAAAGATAGTGGACGGAGGGCACAAATGACACATCAAGGCTATTCCTTTACCCATAATAAAGAAGTGAATGTGATTGTCATCGTTCGACCAATCAGAAATAAGATTCCGCCCATCACCCATAGCTTTACCAAAATGAATTTTATGAAATTTGCAGTACTTAATGTAAAATATTCTTATTGTATTTGTTGTCCAAGTCTTTTGCCTTGAAGTTATTTAAGTGCGGGGATGAAGCCAAAAATGAGCTG ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTGGCTAAACTTGAGGGGATTCCAAGTATACTAAAGATTGGCTCCTAAATATTGGTCTTATTACTACCAGGTGGAAGATTACCATCTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATTGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGGCGTAGTTGAATTACGAAATAAACAGATATAAGAACACTATAGGAAGTTCATCACTCGCCTGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTCGGTACGCAAGCTTTTGAAGGTGACACCCAATTGGGGTAATTCATGTCTATTTTTTATGCATGATGTAAAGATAGTGGACGGAGGGCACAAATGACACATCAAGGCTATTCCTTTACCCATAATAAAGAAGTGAATGTGATTGTCATCGTTCGACCAATCAGAAATAAGATTCCGCCCATCACCCATAGCTTTACCAAAATGAATTTTATGAAATTTGCAGTACTTAATGTAAAATATTCTTATTGTATTTGTTGTCCAAGTCTTTTGCCTTGAAGTTATTTAAGTGCGGGGATGAAGCCAAAAATGAGCTG ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA MCGYVKEKVLNAFQENEWTKVMEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG Homology
BLAST of CmoCh16G000280 vs. ExPASy Swiss-Prot
Match: Q9M276 (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana OX=3702 GN=ATHB-12 PE=1 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 9.8e-30 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy Swiss-Prot
Match: P46897 (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2) HSP 1 Score: 132.1 bits (331), Expect = 9.8e-30 Identity = 92/229 (40.17%), Postives = 130/229 (56.77%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy Swiss-Prot
Match: Q9XH35 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica OX=39946 GN=HOX6 PE=2 SV=2) HSP 1 Score: 114.0 bits (284), Expect = 2.7e-24 Identity = 60/112 (53.57%), Postives = 90/112 (80.36%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy Swiss-Prot
Match: Q651Z5 (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX6 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.7e-24 Identity = 60/112 (53.57%), Postives = 90/112 (80.36%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy Swiss-Prot
Match: Q01IK0 (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2) HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23 Identity = 60/113 (53.10%), Postives = 87/113 (76.99%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy TrEMBL
Match: A0A6J1E8K2 (homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430852 PE=4 SV=1) HSP 1 Score: 528.1 bits (1359), Expect = 2.3e-146 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy TrEMBL
Match: A0A6J1E599 (homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430852 PE=4 SV=1) HSP 1 Score: 512.7 bits (1319), Expect = 9.8e-142 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy TrEMBL
Match: A0A6J1J6P1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483056 PE=4 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135 Identity = 252/267 (94.38%), Postives = 257/267 (96.25%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy TrEMBL
Match: A0A6J1J3H1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483056 PE=4 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 1.0e-130 Identity = 245/260 (94.23%), Postives = 250/260 (96.15%), Query Frame = 0
BLAST of CmoCh16G000280 vs. ExPASy TrEMBL
Match: A0A6J1CGX7 (homeobox-leucine zipper protein ATHB-7-like OS=Momordica charantia OX=3673 GN=LOC111011558 PE=4 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 9.0e-79 Identity = 168/260 (64.62%), Postives = 191/260 (73.46%), Query Frame = 0
BLAST of CmoCh16G000280 vs. NCBI nr
Match: XP_022923068.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 528.1 bits (1359), Expect = 4.7e-146 Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CmoCh16G000280 vs. NCBI nr
Match: KAG6576630.1 (Homeobox-leucine zipper protein ATHB-7, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144 Identity = 265/267 (99.25%), Postives = 266/267 (99.63%), Query Frame = 0
BLAST of CmoCh16G000280 vs. NCBI nr
Match: XP_022923069.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 512.7 bits (1319), Expect = 2.0e-141 Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0
BLAST of CmoCh16G000280 vs. NCBI nr
Match: XP_022984931.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 491.5 bits (1264), Expect = 4.8e-135 Identity = 252/267 (94.38%), Postives = 257/267 (96.25%), Query Frame = 0
BLAST of CmoCh16G000280 vs. NCBI nr
Match: XP_023553122.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_023553124.1 homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 479.6 bits (1233), Expect = 1.9e-131 Identity = 247/260 (95.00%), Postives = 251/260 (96.54%), Query Frame = 0
BLAST of CmoCh16G000280 vs. TAIR 10
Match: AT2G46680.1 (homeobox 7 ) HSP 1 Score: 132.1 bits (331), Expect = 6.9e-31 Identity = 92/229 (40.17%), Postives = 130/229 (56.77%), Query Frame = 0
BLAST of CmoCh16G000280 vs. TAIR 10
Match: AT3G61890.1 (homeobox 12 ) HSP 1 Score: 132.1 bits (331), Expect = 6.9e-31 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 0
BLAST of CmoCh16G000280 vs. TAIR 10
Match: AT2G46680.2 (homeobox 7 ) HSP 1 Score: 124.4 bits (311), Expect = 1.4e-28 Identity = 90/227 (39.65%), Postives = 130/227 (57.27%), Query Frame = 0
BLAST of CmoCh16G000280 vs. TAIR 10
Match: AT2G22430.1 (homeobox protein 6 ) HSP 1 Score: 93.6 bits (231), Expect = 2.7e-19 Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 0
BLAST of CmoCh16G000280 vs. TAIR 10
Match: AT5G65310.1 (homeobox protein 5 ) HSP 1 Score: 93.6 bits (231), Expect = 2.7e-19 Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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