CmoCh16G000140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G000140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr16: 91922 .. 95030 (+)
RNA-Seq ExpressionCmoCh16G000140
SyntenyCmoCh16G000140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTTCTGAAGCACCAGTCATTTCAGTCCACGATGGTGATGGTGTTTTTATGAATACTATATATGTAATGCAAATACATCAATCGTATGATCTTCCCAGATTGTTTGAAGAGAGATATGTAAGGCATGCAGTGCAGACGAAGGGGTTTTGCTTCCGACTCACTGCTACATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATACGGGCTATACATAAAAAGGAAGCATCTCAAAGGTACGGTCCTATCCCTCTGATATCATTCCCTTCCCATTAAATTTTCAGTTTGGCAGTATTATTTAATTACTTGGGATTCTTTTGTGAATGATATAATGTGATGGGTTTGGGAGGGGGGTGTCCCCTAAGCGGTGGGCAGGGCAGGGCAGGAAGGAAGGAGTAATACTTTGGATTGATATGAGTGGTTGTGGCAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAAGGTTTGGTTTGAAATTTGAATGTGAAGCTTTCATTTTGGGTTAATCTCATCCACACACATCCCAGTATGGGGCATCATCCCACTGTTACTTAATTATTAGTTGTGTCCAAGCAGCACATGCTCGGTTTCCAAGCTTGAAAGTTGAATTTCTTAAAGGAAAGAAAGGCTAGAGGCTACATGATTAAGAGGAAAAGAAAAGATAGCCAACAAAGGAAGAGAAGAGGGTTGGATTGGAGGGGTGGAGGGGCTGAGGTTTGTGGCCACAAACCATTCCACCATTCAAAAACCAGTAATTAAGGGTAAGGGGTGGATCAACGGAATCAGCATCTGCTTAAAACGACGTCACTCGATGACTTGACACCACAACACCCGCTCCCACCCTGTAATCATAGAATTAGAAGCCCACCTGAATTCATACTCATTACATGTGCAGCTCTGGTTTGATATCCAATATCCAATATGCAAAGTCTGCAATGAGAGAGGTAGTGATTGGGGTTATAAATTTGGCATCACATTGAGGCGACCAAAGCAAGCTAAGCAATATAATAAGAGGGAAACCAAAGTGTGCATTTGGGTACTGTTGTTGAGAAAATAGATATAGGATGATAAAGGTGGCGATAATGGCGGAGATTTTGGGTGTGTACGTGTCTACTCTTACCAGACTCACGCACCGCTTGGGGCTACCACGATGGAATCTGGCGGTGCATGGCCTCACCGGCTCCCATTCTCCTTCTTCTACCCTTCTAATCCTCTATTTCTAGCTCCCCTCCATCTCCCCTTTCTTTGCTCTTCACTTATTCCTCTGCTCTGCTCTGCCCTGCTCTGCTCTGCTCTTTTGTAAATGAATTATATTCCAAGTATCCTCTGTTCTTTTTTTTTTTTTTTTTTTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTAATTGAACCCAGATAATTCAACATGGTGCATGTTTTCGCGGTAAAAAAAACGCAATAAAACCAATTCCCTGCTTAAGAGGATGACGTGGGTCTGGTTGCATGGGTGTCAAATGGGTTTAATAAATGGAGCTGACCCAACCCAACCCCAACCCCAACCCCAACCCCAACCCCAAACTTTAAATTAGACAAGAGTAAGACATAAGATTTAGGGTAAAATTGGAAAATTAGGCCCAAATTATGTAGAAAAGTCAATATGAATATTTTAAAAGGGAGGGTAAAAACGAAATAATGGGTAAAGGTGAGGGCCGAAAAAGTGAAAAAAAGGCAACCACATTGAATTCCATGAGCGGAGACTTTAGATGGGAAATGGGAGAAGAGAGTGATGACGATCATCAAACTCGAAATGCTTTTCTAGTTTCCTTCCATAACAACTCACTCATATGGTGGAAGAGGAGACGACTGTGCCACCATCTCCTGCTCCTCTCCGCTCCGCTTCACTATTCTGGTTTTCTTCTTCTTCTTCTTTCCTTCTCTCCATTTACGTTCTTCTTCATGTATTTCTTTTCTTTCTTTCTTTCTTTTTTTCTGTAAAAGTCCTCTACGTTTGCGATGTACATCGTCCTCTCTAATTCTGCATATGCAGGAGAATCTTGAATGTCTCCCTTATGGATTTATGCTGTTATTCTATCCCCTTTCCATTGATTTCCTCCTAAAACTCCTCCGATTCATCCATTACCTCGGTCCTCTCCTACAATATGAGCATGGGTTTTGCCTCTCTTGGTGTTGGAAATGGAGGATCTCCGTCGTCTTTTTCCAATTTGTCACCTTTGGCGCCGCCCTTCACTCTTGA

mRNA sequence

CCTTTTCTGAAGCACCAGTCATTTCAGTCCACGATGGTGATGGTGTTTTTATGAATACTATATATGTAATGCAAATACATCAATCGTATGATCTTCCCAGATTGTTTGAAGAGAGATATGTAAGGCATGCAGTGCAGACGAAGGGGTTTTGCTTCCGACTCACTGCTACATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATACGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAAGCTCTGGTTTGATATCCAATATCCAATATGCAAAGTCTGCAATGAGAGAGTTTCCTTCCATAACAACTCACTCATATGGTGGAAGAGGAGACGACTGTGCCACCATCTCCTGCTCCTCTCCGCTCCGCTTCACTATTCTGGTTTTCTTCTTCTTCTTCTTTCCTTCTCTCCATTTACGTTCTTCTTCATGTATTTCTTTTCTTTCTTTCTTTCTTTTTTTCTGTAAAAGTCCTCTACGTTTGCGATGTACATCGTCCTCTCTAATTCTGCATATGCAGGAGAATCTTGAATGTCTCCCTTATGGATTTATGCTGTTATTCTATCCCCTTTCCATTGATTTCCTCCTAAAACTCCTCCGATTCATCCATTACCTCGGTCCTCTCCTACAATATGAGCATGGGTTTTGCCTCTCTTGGTGTTGGAAATGGAGGATCTCCGTCGTCTTTTTCCAATTTGTCACCTTTGGCGCCGCCCTTCACTCTTGA

Coding sequence (CDS)

ATGGACTGGCGCTGGTTCATATCCGTAAGCAAAAGCCTGGCAATGGTCTTTCCCACCCAATACGGGCTATACATAAAAAGGAAGCATCTCAAAGGGATGTATTCAGTTAATGTGGATTACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCACAATCCAGAACCACAAGCAGAAGCAAGGGAAGGACTTGGATCATCATCTCCCCTTTCTTTTGCTGTTATATGATATATGTATAAGCTCTGGTTTGATATCCAATATCCAATATGCAAAGTCTGCAATGAGAGAGTTTCCTTCCATAACAACTCACTCATATGGTGGAAGAGGAGACGACTGTGCCACCATCTCCTGCTCCTCTCCGCTCCGCTTCACTATTCTGGTTTTCTTCTTCTTCTTCTTTCCTTCTCTCCATTTACGTTCTTCTTCATGTATTTCTTTTCTTTCTTTCTTTCTTTTTTTCTGTAAAAGTCCTCTACGTTTGCGATGTACATCGTCCTCTCTAATTCTGCATATGCAGGAGAATCTTGAATGTCTCCCTTATGGATTTATGCTGTTATTCTATCCCCTTTCCATTGATTTCCTCCTAAAACTCCTCCGATTCATCCATTACCTCGGTCCTCTCCTACAATATGAGCATGGGTTTTGCCTCTCTTGGTGTTGGAAATGGAGGATCTCCGTCGTCTTTTTCCAATTTGTCACCTTTGGCGCCGCCCTTCACTCTTGA

Protein sequence

MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTSRSKGRTWITIQNHKQKQGKDLDHHLPFLLLLYDICISSGLISNIQYAKSAMREFPSITTHSYGGRGDDCATISCSSPLRFTILVFFFFFFPSLHLRSSSCISFLSFFLFFCKSPLRLRCTSSSLILHMQENLECLPYGFMLLFYPLSIDFLLKLLRFIHYLGPLLQYEHGFCLSWCWKWRISVVFFQFVTFGAALHS
Homology
[Close]
BLAST of CmoCh16G000140 vs. NCBI nr
Match: KAG6576618.1 (hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 4.1e-40
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60
          MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS
Sbjct: 1  MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60

Query: 61 RSKGRTWITIQNHKQKQGKDLDHH 85
          RSKGRTWITIQNHKQKQGKDLDH+
Sbjct: 61 RSKGRTWITIQNHKQKQGKDLDHN 84

[Close]
BLAST of CmoCh16G000140 vs. NCBI nr
Match: KAG7014670.1 (hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 6.0e-07
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1  MDWRWFISVSKSLAMVFPTQYGLYIKRKHLKGMYSVNVDYNPEPQAEAREGLGSQSRTTS 60
          MDWRWFIS    L         ++I  ++ K     ++D+NPEPQAEAREGLGSQSRTTS
Sbjct: 1  MDWRWFISGCIQL---------MWITIQNHKQKQGKDLDHNPEPQAEAREGLGSQSRTTS 56

Query: 61 RSKGR 66
          RSKG+
Sbjct: 61 RSKGK 56

The following BLAST results are available for this feature:
BLAST of CmoCh16G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G000140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6576618.14.1e-4098.81hypothetical protein SDJN03_24192, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014670.16.0e-0755.38hypothetical protein SDJN02_22299, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh16G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G000140.1CmoCh16G000140.1mRNA