CmoCh15G014550 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G014550
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L7a
Location	Cmo_Chr15: 9867929 .. 9869214 (-)
RNA-Seq Expression	CmoCh15G014550
Synteny	CmoCh15G014550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGATCTTCTTGCATTTTGAGTGATTTAGACGTTCTAATTGTCGATTTGACGTTTATCATGTCCTTTGTTTTTGACGTTTCACGTTTCTTGGTATTTGTTTTCAAGTGTTTAAGAGTGTTAGTTTTGAATTCATTTTCATGCATTTGCAGCAACAAACTTGTTCAGGATGCTTTTGAAGTATAGGCCAGAGGATAAGGCACAGAAAAGGGAGCGTCTTTTGAAAAGAGCTCAGGAAGAGGCTGAAGGCAAATCACACGATGCCAAAAAGCCTATCGTCGTTAAATATGGTCTCAATCATGTTACCTACCTCATCGAGCAGGTGTTTGTTTATTTCATACGTGCGAAAATCTTCACTCTTTCCAACTGCAATGTTTTCTGTAACTTCAATATAAAACGTACTCTATTTCAGAACAAGGCACAGCTGGTTGTGATAGCACATGATGTGGATCCGATCGAGTTGGTTGTATGGCTCCCAGCTTTGTGCAGGAAGATGGAAATTCCATATTGCATTGTGAAGGGAAAAGCACGATTGGGAGCGGTAACAATTTTCCTTTTAACCCTTTCCTGAAAAACGTTTTCCGAATCGCTGAACCCCGGGGACAGTCATTTGAAAAGTGTTCCTTTTGCAACAGATTGTCCATAAGAAGACTGCATCAGTTTTGTGCTTGACAACAGTTAAGAACGAAGATAAGATGGAGTTCAGCAGGATCCTAGAAGCTATTAAGGTGACTAGCACATTTAAAATAGATATTACTCTTGTCGTGTACCTCTACGTCGAGCTTACTTTTTTAATACGCGTGCTTTAGGCAAACTTCAACGACAAGTACGACGAGTACAGGAAGAAGTGGGGTGGCGGAATCATGGGTTCCAAGTCACAGGCCAAAACCAAAGCAAAGGAGAGGCTCCTTGCCAAGGAAGCAGCTCAAAGGATGTCTTAGGAATTCCCAGACCCAACTCTAGGAGCGAGCAAAGGACAAAGGAGAAGCTTTTAGCAGAGCAGAGGGTGTCAAAGTATGGCTGAGGGAGTCGGTAATGATCTATAACTTGAGCCATTTTTCTCTGATTACAAAGCAGATTTTTCACGAGGCTTGTTTTTGTTTTCAGCTTTTAAGTTTTTTGGATTGTGAAATTTTACTACGAGTTGACATTATGGAATTATTCTATGTGGACACCGATTTTCTCGTATATGTCTTGAGTTATACGTTTGATATCGACATTATGAAATTATACAACATGCACACCTTTTATTGATATTTTCTCGACTTTTTTTATAAATGGAG

mRNA sequence

ATGCTTGGATCTTCTTGCATTTTGAGTGATTTAGACGTTCTAATTGTCGATTTGACGTTTATCATGTCCTTTGTTTTTGACGTTTCACCAACAAACTTGTTCAGGATGCTTTTGAAGTATAGGCCAGAGGATAAGGCACAGAAAAGGGAGCGTCTTTTGAAAAGAGCTCAGGAAGAGGCTGAAGGCAAATCACACGATGCCAAAAAGCCTATCGTCGTTAAATATGGTCTCAATCATGTTACCTACCTCATCGAGCAGGTGTTTGTTTATTTCATACGTGCGAAAATCTTCACTCTTTCCAACTGCAATGTTTTCTGTAACTTCAATATAAAACGTACTCTATTTCAGAACAAGGCACAGCTGGTTGTGATAGCACATGATGTGGATCCGATCGAGTTGGTTGTATGGCTCCCAGCTTTGTGCAGGAAGATGGAAATTCCATATTGCATTGTGAAGGGAAAAGCACGATTGGGAGCGATTGTCCATAAGAAGACTGCATCAGTTTTGTGCTTGACAACAGTTAAGAACGAAGATAAGATGGAGTTCAGCAGGATCCTAGAAGCTATTAAGGTGACTAGCACATTTAAAATAGATATTACTCTTGTCGTGTACCTCTACGTCGAGCTTACTTTTTTAATACGCGCAAACTTCAACGACAAGTACGACGAGTACAGGAAGAAGTGGGGTGGCGGAATCATGGGTTCCAAGTCACAGGCCAAAACCAAAGCAAAGGAGAGGCTCCTTGCCAAGGAAGCAGCTCAAAGGATGTCTTAGGAATTCCCAGACCCAACTCTAGGAGCGAGCAAAGGACAAAGGAGAAGCTTTTAGCAGAGCAGAGGGTGTCAAAGTATGGCTGAGGGAGTCGGTAATGATCTATAACTTGAGCCATTTTTCTCTGATTACAAAGCAGATTTTTCACGAGGCTTGTTTTTGTTTTCAGCTTTTAAGTTTTTTGGATTGTGAAATTTTACTACGAGTTGACATTATGGAATTATTCTATGTGGACACCGATTTTCTCGTATATGTCTTGAGTTATACGTTTGATATCGACATTATGAAATTATACAACATGCACACCTTTTATTGATATTTTCTCGACTTTTTTTATAAATGGAG

Coding sequence (CDS)

ATGCTTGGATCTTCTTGCATTTTGAGTGATTTAGACGTTCTAATTGTCGATTTGACGTTTATCATGTCCTTTGTTTTTGACGTTTCACCAACAAACTTGTTCAGGATGCTTTTGAAGTATAGGCCAGAGGATAAGGCACAGAAAAGGGAGCGTCTTTTGAAAAGAGCTCAGGAAGAGGCTGAAGGCAAATCACACGATGCCAAAAAGCCTATCGTCGTTAAATATGGTCTCAATCATGTTACCTACCTCATCGAGCAGGTGTTTGTTTATTTCATACGTGCGAAAATCTTCACTCTTTCCAACTGCAATGTTTTCTGTAACTTCAATATAAAACGTACTCTATTTCAGAACAAGGCACAGCTGGTTGTGATAGCACATGATGTGGATCCGATCGAGTTGGTTGTATGGCTCCCAGCTTTGTGCAGGAAGATGGAAATTCCATATTGCATTGTGAAGGGAAAAGCACGATTGGGAGCGATTGTCCATAAGAAGACTGCATCAGTTTTGTGCTTGACAACAGTTAAGAACGAAGATAAGATGGAGTTCAGCAGGATCCTAGAAGCTATTAAGGTGACTAGCACATTTAAAATAGATATTACTCTTGTCGTGTACCTCTACGTCGAGCTTACTTTTTTAATACGCGCAAACTTCAACGACAAGTACGACGAGTACAGGAAGAAGTGGGGTGGCGGAATCATGGGTTCCAAGTCACAGGCCAAAACCAAAGCAAAGGAGAGGCTCCTTGCCAAGGAAGCAGCTCAAAGGATGTCTTAG

Protein sequence

MLGSSCILSDLDVLIVDLTFIMSFVFDVSPTNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVYFIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS

Homology

[Close]

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot
Match: P35685 (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-73
Identity = 155/227 (68.28%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKA K+ERLLKRAQ EAEGK+ +AKKPIVVKYGLNHVTYLIE     
Sbjct: 86  TNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE----- 145

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    Q+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 146 -------------------------QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 205

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLG+IVHKKTASVLCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 206 VKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIK-------------------- 258

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDK+DE RKKWGGG+MGSKSQAKTKA+E+LLAKEAAQRM+
Sbjct: 266 ----ANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258

[Close]

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot
Match: P0DKK7 (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-73
Identity = 155/227 (68.28%), Postives = 169/227 (74.45%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKA K+ERLLKRAQ EAEGK+ +AKKPIVVKYGLNHVTYLIE     
Sbjct: 86  TNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIE----- 145

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    Q+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 146 -------------------------QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 205

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLG+IVHKKTASVLCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 206 VKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIK-------------------- 258

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDK+DE RKKWGGG+MGSKSQAKTKA+E+LLAKEAAQRM+
Sbjct: 266 ----ANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRMT 258

[Close]

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot
Match: P49692 (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 273.1 bits (697), Expect = 3.2e-72
Identity = 150/227 (66.08%), Postives = 168/227 (74.01%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           T+LF++LLKYRPEDKA K+ERL+K+AQ EAEGK  ++KKPIVVKYGLNHVTYLIE     
Sbjct: 85  TSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE----- 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 145 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGK+RLGA+VH+KTAS LCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 205 VKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIK-------------------- 257

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKY+EYRKKWGGGIMGSKSQAKTKAKER++AKEAAQRM+
Sbjct: 265 ----ANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 257

[Close]

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot
Match: Q9LZH9 (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-71
Identity = 149/227 (65.64%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           T+LF++LLKYRPEDKA K+ERLL +AQ EAEGK  ++KKPIVVKYGLNHVTYLIE     
Sbjct: 84  TSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE----- 143

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 144 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 203

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGK+RLGA+VH+KTA+ LCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 204 VKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIK-------------------- 256

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKY+EYRKKWGGGIMGSKSQAKTKAKER++AKEAAQRM+
Sbjct: 264 ----ANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 256

[Close]

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot
Match: P46223 (60S ribosomal protein L7a OS=Drosophila melanogaster OX=7227 GN=RpL7A PE=1 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 1.8e-38
Identity = 101/224 (45.09%), Postives = 126/224 (56.25%), Query Frame = 0


Query: 33  LFRMLLKYRPEDKAQKRERLLKRAQEEAEGKS-HDAKKPIVVKYGLNHVTYLIEQVFVYF 92
           LF++L KYRPE    K+ RL K A+ +A+GK     KKP  V  G N VT LIE      
Sbjct: 100 LFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEPKKKPSYVSAGTNTVTKLIE------ 159

Query: 93  IRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 152
                                   Q KAQLVVIAHDVDP+ELV++LPALCRKM +PYCIV
Sbjct: 160 ------------------------QKKAQLVVIAHDVDPLELVLFLPALCRKMGVPYCIV 219

Query: 153 KGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELTF 212
           KGKARLG +V +KT + L LTTV N DK  F ++LEA+K                     
Sbjct: 220 KGKARLGRLVRRKTCTTLALTTVDNNDKANFGKVLEAVK--------------------- 269

Query: 213 LIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQR 256
               NFN++++E R+ WGGGI+GSKS A+    ER  A+E AQ+
Sbjct: 280 ---TNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQK 269

[Close]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL
Match: A0A6J1EQG1 (60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435677 PE=3 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 3.1e-102
Identity = 203/227 (89.43%), Postives = 203/227 (89.43%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY
Sbjct: 85  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
           FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI
Sbjct: 145 FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK                    
Sbjct: 205 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK-------------------- 264

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 ----ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 287

[Close]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL
Match: A0A6J1ELL6 (60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435676 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 3.2e-83
Identity = 179/236 (75.85%), Postives = 186/236 (78.81%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQV  Y
Sbjct: 85  TNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVVFY 144

Query: 91  FIRAKIFTL---------SNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALC 150
            I+AKI +          + C       +    FQNKAQLVVIAHDVDPIELVVWLPALC
Sbjct: 145 SIQAKIHSFHLQCSLQSDTPCIYSRGSKMYFLSFQNKAQLVVIAHDVDPIELVVWLPALC 204

Query: 151 RKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITL 210
           RKMEIPYCIVKGKARLGAIVH+KTASVLCLTTVKNEDK+EFSRILEAIK           
Sbjct: 205 RKMEIPYCIVKGKARLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIK----------- 264

Query: 211 VVYLYVELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
                        ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 -------------ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 296

[Close]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL
Match: A0A6J1EM71 (60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435677 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 173/227 (76.21%), Postives = 173/227 (76.21%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIE     
Sbjct: 85  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIE----- 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI
Sbjct: 145 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK                    
Sbjct: 205 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK-------------------- 257

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 ----ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 257

[Close]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL
Match: A0A6J1I354 (60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469157 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 3.7e-79
Identity = 171/227 (75.33%), Postives = 173/227 (76.21%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIV+KYGLNHVTYLIE     
Sbjct: 85  TNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVIKYGLNHVTYLIE----- 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI
Sbjct: 145 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK                    
Sbjct: 205 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK-------------------- 257

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 ----ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 257

[Close]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL
Match: A0A6J1DV46 (60S ribosomal protein L7a OS=Momordica charantia OX=3673 GN=LOC111023378 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.4e-78
Identity = 170/227 (74.89%), Postives = 173/227 (76.21%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIE     
Sbjct: 87  TNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIE----- 146

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI
Sbjct: 147 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 206

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLGAIVHKKTASVLCLTTVKNEDK+EFSRILEAIK                    
Sbjct: 207 VKGKARLGAIVHKKTASVLCLTTVKNEDKLEFSRILEAIK-------------------- 259

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKE+LLAKEAAQRMS
Sbjct: 267 ----ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 259

[Close]

BLAST of CmoCh15G014550 vs. NCBI nr
Match: XP_022928908.1 (60S ribosomal protein L7a-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 381.3 bits (978), Expect = 6.4e-102
Identity = 203/227 (89.43%), Postives = 203/227 (89.43%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY
Sbjct: 85  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
           FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI
Sbjct: 145 FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK                    
Sbjct: 205 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK-------------------- 264

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 ----ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 287

[Close]

BLAST of CmoCh15G014550 vs. NCBI nr
Match: XP_038876465.1 (60S ribosomal protein L7a-2 isoform X1 [Benincasa hispida])

HSP 1 Score: 335.5 bits (859), Expect = 4.1e-88
Identity = 185/236 (78.39%), Postives = 191/236 (80.93%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQV +Y
Sbjct: 85  TNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVIIY 144

Query: 91  FIRAKIFTLSNCNVFCN-----FNIKRTLF----QNKAQLVVIAHDVDPIELVVWLPALC 150
            I  K FTL NCNV CN     + +    F    QNKAQLVVIAHDVDPIELVVWLPALC
Sbjct: 145 SIHVKYFTLFNCNVVCNQIHSLYLLTSIYFVLHTQNKAQLVVIAHDVDPIELVVWLPALC 204

Query: 151 RKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITL 210
           RKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDK+EFSRILEAIK           
Sbjct: 205 RKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKLEFSRILEAIK----------- 264

Query: 211 VVYLYVELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
                        ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKE+LLAKEAAQRMS
Sbjct: 265 -------------ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 296

[Close]

BLAST of CmoCh15G014550 vs. NCBI nr
Match: XP_022928906.1 (60S ribosomal protein L7a-2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 318.2 bits (814), Expect = 6.7e-83
Identity = 179/236 (75.85%), Postives = 186/236 (78.81%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQV  Y
Sbjct: 85  TNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVVFY 144

Query: 91  FIRAKIFTL---------SNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALC 150
            I+AKI +          + C       +    FQNKAQLVVIAHDVDPIELVVWLPALC
Sbjct: 145 SIQAKIHSFHLQCSLQSDTPCIYSRGSKMYFLSFQNKAQLVVIAHDVDPIELVVWLPALC 204

Query: 151 RKMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITL 210
           RKMEIPYCIVKGKARLGAIVH+KTASVLCLTTVKNEDK+EFSRILEAIK           
Sbjct: 205 RKMEIPYCIVKGKARLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIK----------- 264

Query: 211 VVYLYVELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
                        ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS
Sbjct: 265 -------------ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 296

[Close]

BLAST of CmoCh15G014550 vs. NCBI nr
Match: XP_011651548.1 (60S ribosomal protein L7a-2 isoform X2 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 2.8e-81
Identity = 174/230 (75.65%), Postives = 181/230 (78.70%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           TNLF+MLLKYRPED++QKRERLLKRAQEEA+GK HDAKKPIVVKYGLNHVTYLIEQV   
Sbjct: 85  TNLFKMLLKYRPEDRSQKRERLLKRAQEEADGKPHDAKKPIVVKYGLNHVTYLIEQVLFL 144

Query: 91  FIRAKIFTLSNCNVFCNFNIK---RTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIP 150
                 FT S       F      + LFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIP
Sbjct: 145 IHSCLAFTYSVVITVWGFKYTHGLKLLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIP 204

Query: 151 YCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYV 210
           YCIVKGKARLG+IVHKKTASVLCLTTVKNEDKMEFSRILEAIK                 
Sbjct: 205 YCIVKGKARLGSIVHKKTASVLCLTTVKNEDKMEFSRILEAIK----------------- 264

Query: 211 ELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
                  ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKE+LLAKEAAQRMS
Sbjct: 265 -------ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 290

[Close]

BLAST of CmoCh15G014550 vs. NCBI nr
Match: XP_038876463.1 (60S ribosomal protein L7a-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 4.8e-81
Identity = 178/235 (75.74%), Postives = 182/235 (77.45%), Query Frame = 0


Query: 32  NLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVYF 91
           NLF+MLLKYRPEDK QKRERLLKRAQEEAEGK+HDAKKPIVVKYGLNHVTYLIEQV  Y 
Sbjct: 86  NLFKMLLKYRPEDKTQKRERLLKRAQEEAEGKTHDAKKPIVVKYGLNHVTYLIEQVNFYP 145

Query: 92  IRAK---IFTLSNCNVFCNFNIKRT------LFQNKAQLVVIAHDVDPIELVVWLPALCR 151
           I  K    F L  C       +  T       FQNKAQLVVIAHDVDPIELVVWLPALCR
Sbjct: 146 IHVKKFHSFQLQYCLQSDTLALSLTSMYYILYFQNKAQLVVIAHDVDPIELVVWLPALCR 205

Query: 152 KMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLV 211
           KMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK            
Sbjct: 206 KMEIPYCIVKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIK------------ 265

Query: 212 VYLYVELTFLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
                       ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKE+LLAKEAAQRMS
Sbjct: 266 ------------ANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMS 296

[Close]

BLAST of CmoCh15G014550 vs. TAIR 10
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-73
Identity = 150/227 (66.08%), Postives = 168/227 (74.01%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           T+LF++LLKYRPEDKA K+ERL+K+AQ EAEGK  ++KKPIVVKYGLNHVTYLIE     
Sbjct: 85  TSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE----- 144

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 145 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 204

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGK+RLGA+VH+KTAS LCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 205 VKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIK-------------------- 257

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKY+EYRKKWGGGIMGSKSQAKTKAKER++AKEAAQRM+
Sbjct: 265 ----ANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 257

[Close]

BLAST of CmoCh15G014550 vs. TAIR 10
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 271.2 bits (692), Expect = 8.7e-73
Identity = 149/227 (65.64%), Postives = 167/227 (73.57%), Query Frame = 0


Query: 31  TNLFRMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDAKKPIVVKYGLNHVTYLIEQVFVY 90
           T+LF++LLKYRPEDKA K+ERLL +AQ EAEGK  ++KKPIVVKYGLNHVTYLIE     
Sbjct: 84  TSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE----- 143

Query: 91  FIRAKIFTLSNCNVFCNFNIKRTLFQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 150
                                    QNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCI
Sbjct: 144 -------------------------QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCI 203

Query: 151 VKGKARLGAIVHKKTASVLCLTTVKNEDKMEFSRILEAIKVTSTFKIDITLVVYLYVELT 210
           VKGK+RLGA+VH+KTA+ LCLTTVKNEDK+EFS+ILEAIK                    
Sbjct: 204 VKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIK-------------------- 256

Query: 211 FLIRANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS 258
               ANFNDKY+EYRKKWGGGIMGSKSQAKTKAKER++AKEAAQRM+
Sbjct: 264 ----ANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 256

The following BLAST results are available for this feature:

BLAST of CmoCh15G014550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P35685	1.0e-73	68.28	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 ...	[more]
P0DKK7	1.0e-73	68.28	60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 ...	[more]
P49692	3.2e-72	66.08	60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2	[more]
Q9LZH9	1.2e-71	65.64	60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1	[more]
P46223	1.8e-38	45.09	60S ribosomal protein L7a OS=Drosophila melanogaster OX=7227 GN=RpL7A PE=1 SV=2	[more]

BLAST of CmoCh15G014550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQG1	3.1e-102	89.43	60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435677 PE=3 SV=...	[more]
A0A6J1ELL6	3.2e-83	75.85	60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435676 PE=3 SV=...	[more]
A0A6J1EM71	1.3e-79	76.21	60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435677 PE=3 SV=...	[more]
A0A6J1I354	3.7e-79	75.33	60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469157 PE=3 SV=1	[more]
A0A6J1DV46	1.4e-78	74.89	60S ribosomal protein L7a OS=Momordica charantia OX=3673 GN=LOC111023378 PE=3 SV...	[more]

BLAST of CmoCh15G014550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928908.1	6.4e-102	89.43	60S ribosomal protein L7a-2-like isoform X1 [Cucurbita moschata]	[more]
XP_038876465.1	4.1e-88	78.39	60S ribosomal protein L7a-2 isoform X1 [Benincasa hispida]	[more]
XP_022928906.1	6.7e-83	75.85	60S ribosomal protein L7a-2 isoform X1 [Cucurbita moschata]	[more]
XP_011651548.1	2.8e-81	75.65	60S ribosomal protein L7a-2 isoform X2 [Cucumis sativus]	[more]
XP_038876463.1	4.8e-81	75.74	60S ribosomal protein L7a-2-like isoform X1 [Benincasa hispida]	[more]

BLAST of CmoCh15G014550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47610.1	2.3e-73	66.08	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G62870.1	8.7e-73	65.64	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001921	Ribosomal protein L7A/L8	PRINTS	PR00882	RIBOSOMALL7A	coord: 35..48 score: 55.19 coord: 69..89 score: 52.81
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 113..181 e-value: 2.8E-19 score: 68.7
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 205..251 e-value: 3.6E-7 score: 31.9
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 27..200 e-value: 2.8E-49 score: 169.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 33..179
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 36..86
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 116..191
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 213..255
None	No IPR available	PANTHER	PTHR23105:SF168	BNAA03G47020D PROTEIN	coord: 36..86
None	No IPR available	PANTHER	PTHR23105:SF168	BNAA03G47020D PROTEIN	coord: 116..191
None	No IPR available	PANTHER	PTHR23105:SF168	BNAA03G47020D PROTEIN	coord: 213..255
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 141..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G014550.1	CmoCh15G014550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding