CmoCh15G013990 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G013990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 9521889 .. 9522110 (-)
RNA-Seq ExpressionCmoCh15G013990
SyntenyCmoCh15G013990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

mRNA sequence

ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

Coding sequence (CDS)

ATGATGCTCGTGTCGGTACTAGCGGAGATTCTGGAGGAGTACACGGTGTTGCTTACGGAGGTGCTCCGGCAGCTCTTCCATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCAACAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCCTAATTCACTCCAATCGACCTAGCGGCGCAGTTGCTTAG

Protein sequence

MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSSALIHSNRPSGAVA
Homology
BLAST of CmoCh15G013990 vs. ExPASy TrEMBL
Match: A0A6J1EQP1 (uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC111435715 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 ALIHSNRPSGAVA 74
          ALIHSNRPSGAVA
Sbjct: 61 ALIHSNRPSGAVA 73

BLAST of CmoCh15G013990 vs. ExPASy TrEMBL
Match: A0A6J1I1Z0 (uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-22
Identity = 67/73 (91.78%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN      SSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN------SSSSSS 60

Query: 61 ALIHSNRPSGAVA 74
          ALIHSNRPSGAVA
Sbjct: 61 ALIHSNRPSGAVA 67

BLAST of CmoCh15G013990 vs. ExPASy TrEMBL
Match: A0A6J1DZC9 (uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025999 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSS 54
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLP  NNS+SS+
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSA 53

BLAST of CmoCh15G013990 vs. ExPASy TrEMBL
Match: A0A1S3AUP0 (uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 43/54 (79.63%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSS 55
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFPRRVRFLILHNLPFA+  ++ S+
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of CmoCh15G013990 vs. ExPASy TrEMBL
Match: A0A0A0KM75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.4e-12
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 52
          MMLVSVLAEILEEYTV+L++VLRQLF+SAPFP RVRFLILHNLPFA+  ++
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51

BLAST of CmoCh15G013990 vs. NCBI nr
Match: XP_022928978.1 (uncharacterized protein LOC111435715 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 6.2e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 ALIHSNRPSGAVA 74
          ALIHSNRPSGAVA
Sbjct: 61 ALIHSNRPSGAVA 73

BLAST of CmoCh15G013990 vs. NCBI nr
Match: KAG7017064.1 (hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN---SSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN   SSSSSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 SSSALIHSNRPSGAVA 74
          SSSALIHSNRPSGAVA
Sbjct: 61 SSSALIHSNRPSGAVA 76

BLAST of CmoCh15G013990 vs. NCBI nr
Match: XP_023520510.1 (uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN    SSSSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN----SSSSSSSS 60

Query: 61 ALIHSNRPSGAVA 74
          ALI+SNRPSGAVA
Sbjct: 61 ALIYSNRPSGAVA 69

BLAST of CmoCh15G013990 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 113.6 bits (283), Expect = 7.1e-22
Identity = 67/73 (91.78%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60
          MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN      SSSSSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANN------SSSSSS 60

Query: 61 ALIHSNRPSGAVA 74
          ALIHSNRPSGAVA
Sbjct: 61 ALIHSNRPSGAVA 67

BLAST of CmoCh15G013990 vs. NCBI nr
Match: XP_022159655.1 (uncharacterized protein LOC111025999 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 4.6e-13
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSS 54
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLP  NNS+SS+
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSA 53

BLAST of CmoCh15G013990 vs. TAIR 10
Match: AT1G33055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 6.2e-08
Identity = 26/51 (50.98%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSS 52
          M+LV+++AE+++EYTV+L  V+  LF  APFPRR+R  IL++LPF ++++S
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTS 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EQP13.0e-26100.00uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1I1Z03.4e-2291.78uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109... [more]
A0A6J1DZC92.2e-1384.91uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A1S3AUP02.5e-1279.63uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=... [more]
A0A0A0KM759.4e-1280.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022928978.16.2e-26100.00uncharacterized protein LOC111435715 [Cucurbita moschata][more]
KAG7017064.12.6e-2496.05hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023520510.14.2e-2293.15uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo][more]
XP_022970120.17.1e-2291.78uncharacterized protein LOC111469109 [Cucurbita maxima][more]
XP_022159655.14.6e-1384.91uncharacterized protein LOC111025999 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G33055.16.2e-0850.98unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..66
NoneNo IPR availablePANTHERPTHR48175OS04G0581700 PROTEINcoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G013990.1CmoCh15G013990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity