CmoCh15G013600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G013600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr15: 9301295 .. 9304152 (+)
RNA-Seq Expression	CmoCh15G013600
Synteny	CmoCh15G013600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGTAAGCAAAACTCCTCTGTTTCTTCATCTTCCTAGTTTGCTGTCTTTTTCTTATTCTGGGTGTTTCCATTTCTGTAATTTACTTTTGGGGTCAGAGAATCTAAGGAAGATTTGAAGCTTTAGCATTCATCTTTTTTCCTTTTTTGGAAGTGGGTGTTTGATTTGCAGTGATTTTGTGCCATTTTTCTTCATCTCACTGATCTTAATTGTGCAGGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTAAGTGTCATCATTTCTGATCGTTAAAAGATCTGTGGCCCTCTGAGTTTCTTTACTGAATTTACAAAAGCTACCACAAAGATAACAGGAAGGGAATACTTTTTTCTTCTTTTTATTCGTTAAAGTACTCAGGATAGAAATCAATAGGTGCACCTACTAAAGTTAAGTAAAGGACGAGAGCGGATTCTAGATTATATCAGTTGGGTAGGCTGGATTGGGATTCTAAAAAAATCTCTATGAATTCTTCTATGCAAGAGACGTACTCAGGTGGTTTAGTGATGTCTCCAACAGTTTTACTCGATCTCCGATCTCTAGATCGAATAATTTATGTATCGAGATATCTCTACAACTCATTATAATAGAAACTAATGTGTTAGAGAGAAATAAAAGGGGACAAAAATACAGAACAGACAAGAGATAGAGATGGAAGGTTTAGTGACTTAAATAGGGAGCACACATAACATAACAAACAATGATAAAGCTAAATGCTAAACATTTTTTCAATTTCTGTTGATTTTTTTAGATTACTGTTCTTTGAAGGATTGGAATCTCTTATAACATCCTCACTTTAATTTCTCAAAAGTGGGTTTAAACTTTTTGGTTCTATAAGTTACTTTTGTTTGTCTTCTTTTGTTTGAAAGGAGTTATTTGTAGAACATTAGGCCGACAAAATTGATATTGAAGATGAAGGGCATGTTTGGTTCTTTTTTGTACATAGTAATTATGTTTCAATATTCTTTTATTACTTTAGTAAATTAATAAATAGTTCGTAATTTAAAATTTAAATCCTAGTTTTAAGCACTCCTAAGAGGATGGCCTTGTTTGTTTGTATCTTTTAAACCTTTATTTATTTCTCTGCACAAGGATTGAATGTAACGACCTAGATCCACCGCTAACAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGACTTCCCCTCAAGGTTTTAAAACGTGTCTGCTAGGAGAAGGTTTCCACACCCTTATAAAGGGTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTTGGGGCCCAGAGTCCTCGCTAACACTCGTTCCTTTATCCAATCGATGTGAGACTGCCCCCAAATCCACCCTCCTTTGGGGCTCAGCGTCCTTACTGGCACACTGCCTCGTGTCTACCCCCCTTCAGGGAACAGCGGGAAGGCCGACACATCGTCCGGTGACTGGCTCTGATACCATTTGGAACGACCCAGATTTCTCAAATAGATATTATAAAGGCCAATACTGCTAGCGGTGGATCTGGGTCGTTACATTGAACTTTTTGTTTATAAACCTAAATTTCTCAAATAGATATTATAAAGGCCAACATGAATAGAAATTACATAATTATTGAACTAAAAGCATAAATCTAGAGTTAGGACATCATTTCAACCAATGTATAGTATGAAAATTAGAACTTTCGAAATTAAGAAAAGTGCATGTCCATTACCGTGGAGTATAGTTGAGGTTGGCCCCTTCTTGCAATTAAATGTCTCCAATTTGGGGGGAGAGATTGATATTTGAAGTCAACCTTATATTGCCCTTAGGATGTGTGGGGTTGAAAATGAGCACTGAAACAAAGAAAAAGTAATGATTTTCTTATCCATTTAACAGGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCACCACCGGCTGGCTCATCGGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAAATGTATTGATCCAACACTGCTAGGTTGAAATGGACTAATAACTCAAAAGAGTGACTCCCATGGAGGGAGAACCAGTTGTCCTCCATATTCATACACAAACATATATATATTAACAAGCTTTTTGCAACCTCCCACTGTAACTGATAGCAGCTAGCCAGGCATTGTGATCTTCAGACAGCCAAAACAGTCCTGTTAGAGATCAGAATGTAAAGAGCTATTACTTGAACATTGCCAACTAGAACACTTCCTGTCTCCCCTCTTCATTGCATTAACCACTGAATATGGAAAGAATGGAAATAAAGGGTTCTATTGTTGAGTTTGTGGGGCATATGGCTTAAACATCTCATGCAGGTAACATAAAACACGAG

mRNA sequence

ATGGGTCAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCACCACCGGCTGGCTCATCGGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAAATGTATTGATCCAACACTGCTAGGTTGAAATGGACTAATAACTCAAAAGAGTGACTCCCATGGAGGGAGAACCAGTTGTCCTCCATATTCATACACAAACATATATATATTAACAAGCTTTTTGCAACCTCCCACTGTAACTGATAGCAGCTAGCCAGGCATTGTGATCTTCAGACAGCCAAAACAGTCCTGTTAGAGATCAGAATGTAAAGAGCTATTACTTGAACATTGCCAACTAGAACACTTCCTGTCTCCCCTCTTCATTGCATTAACCACTGAATATGGAAAGAATGGAAATAAAGGGTTCTATTGTTGAGTTTGTGGGGCATATGGCTTAAACATCTCATGCAGGTAACATAAAACACGAG

Coding sequence (CDS)

ATGGGTCAGCCTCAAACTCCAGCCCCTCCTCATCTTTATCCTCAAGCACTTCAACTTAAGCTTTATCAGGCCTTCATATTCTCCATTCCCATCCTCTTCTCCATTATTCTCTTCCTTCTTTTCTACCTGTTTTATCTCAAGAGAAGGGCTTCCTCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCCCCCAATACTTCCAACTACTTCCAATACACTCACTCTCTATGTTACCACTGCTTGTCAAGTGGATTTGAAGGCTGATAATCCCGTAGACAAACTTCCTAAGATCCTATTCAATGAAGAGCTAAGGACCAGAGATTCTCTGTGTTGCGTCTGCCTAGGAGAATTCGAGATAAAAGAGGAATTGTTGCAAGTCCCATCATGTAAACATGTGTTTCATATTGACTGCATGAATCACTGGCTCACCTCCAACTCAACTTGTCCTCTCTGTAGATGCTCAGTCATCCCAACAACCAGGTGTTTTGATCCGCCGGTTGTTGTGTCTCCCCCACCCCCACCACCGGCTGGCTCATCGGAGCTTCCCCTGACTTCCAACCAGACTGCAGAGATGAGATCATATTCACTCCTACATCCGCAGCTGCAACAACAACAGGAAGGATCAAGTCAGAGTATATGCTAA

Protein sequence

MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC

Homology

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BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot
Match: Q84TF5 (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.2e-49
Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           M  PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSS S   
Sbjct: 1   MVDPQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPS--- 60

Query: 61  SSFPPILPTTSNTLT-LYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 120
              P ILP +S+  T  ++ + C +D+K +   DKL  +LFNEEL TRDSLCCVCLGEFE
Sbjct: 61  ---PMILPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFE 120

Query: 121 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSV 157
           +KEEL+++P CKH+FH+DC++ WL S++TCPLCR SV
Sbjct: 121 LKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

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BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot
Match: Q570X5 (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 7.2e-25
Identity = 68/158 (43.04%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLY 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    ++  P       N+L+  
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIP------GNSLST- 78

Query: 78  VTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHID 137
           +      +L+     + LP ++F E     DS C VCLG+++  ++L Q+P CKH FH+D
Sbjct: 79  IELGLSKELR-----EMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMD 138

Query: 138 CMNHWLTSNSTCPLCRCSVIP--TTRCFDPPV--VVSP 172
           C++ WLTS++TCPLCR ++IP  + +  D PV  +VSP
Sbjct: 139 CIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSP 164

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BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot
Match: Q9SN28 (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-24
Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 4   PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 63
           P+T AP +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 64  PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 123
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 124 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIP 159
           L Q+PSC H FH++C++ WLTS++TCPLCR S+IP
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

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BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTTACQV 84
           FI  +PI   +I+ L+ Y+    RR S+ +   SS   F P    T+N L     +  ++
Sbjct: 24  FIVCVPICVILIVLLVLYIM---RRNSNTNVDWSSLGGFVP----TNNNL-----STAEL 83

Query: 85  DLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLT 144
            L  D   + LP +++ E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WLT
Sbjct: 84  GLSKDIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT 143

Query: 145 SNSTCPLCRCSVIP 159
           S++TCPLCR S+IP
Sbjct: 144 SHTTCPLCRLSLIP 144

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BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-13
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 26  IFSIPILFSIILFL-----LFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTT 85
           I  I +L S+I F+     L   +YLK++ S+LSSS + S+  P    + +    L    
Sbjct: 53  ILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLF 112

Query: 86  ACQVDLKADNPVDKLPKILFNEELRTRDSL-CCVCLGEFEIKEELLQVPSCKHVFHIDCM 145
                      +D LP  L+ E   T++   C VCL EF   ++L  +P+C H FHIDC+
Sbjct: 113 HLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172

Query: 146 NHWLTSNSTCPLCRCSVIPTTRCFDPP 167
           + WL SNSTCPLCR ++      F+ P
Sbjct: 173 DTWLLSNSTCPLCRGTLFSLGHQFEYP 199

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BLAST of CmoCh15G013600 vs. ExPASy TrEMBL
Match: A0A6J1EM64 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111435669 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
           SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180
           KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180

Query: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of CmoCh15G013600 vs. ExPASy TrEMBL
Match: A0A6J1I2V6 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111469090 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.5e-110
Identity = 209/214 (97.66%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
           SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180
           KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPP AGSS
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPSAGSS 180

Query: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           E P TS+QTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 181 EPPPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of CmoCh15G013600 vs. ExPASy TrEMBL
Match: A0A6J1H2A4 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC111459379 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.8e-93
Identity = 193/222 (86.94%), Postives = 198/222 (89.19%), Query Frame = 0


Query: 1   MGQPQTP-APPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQTP APPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTPAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  SSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 120
           S   PPILPTTSN LTLYVTTAC+VDLKADNP+DKLPKI FNEELR+RDSLCCVCLGEFE
Sbjct: 61  SP--PPILPTTSNRLTLYVTTACRVDLKADNPMDKLPKIFFNEELRSRDSLCCVCLGEFE 120

Query: 121 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVV----SPPPPP 180
           IKEELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRC DPPV+V    +PPPPP
Sbjct: 121 IKEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPP 180

Query: 181 P---AGSSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           P   A S ELPL SNQTAEM SYSL HPQL QQQ GSSQSIC
Sbjct: 181 PPPLAASLELPLASNQTAEMVSYSLQHPQL-QQQIGSSQSIC 219

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BLAST of CmoCh15G013600 vs. ExPASy TrEMBL
Match: A0A6J1K5R3 (probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111490976 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.4e-92
Identity = 191/220 (86.82%), Postives = 197/220 (89.55%), Query Frame = 0


Query: 1   MGQPQT-PAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60
           MG PQT  APPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS
Sbjct: 1   MGVPQTSAAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSS 60

Query: 61  SSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 120
           S   PPILPTTSN LTLYVTTAC+VDLKA+NP+DKLPKI FNEELR+RDSLCCVCLGEFE
Sbjct: 61  SPP-PPILPTTSNRLTLYVTTACRVDLKANNPIDKLPKIFFNEELRSRDSLCCVCLGEFE 120

Query: 121 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVV----SPPPPP 180
           IKEELLQVPSCKHVFHIDCMN WL SNSTCPLCRCSVIPTTRC DPPV+V    +PPPPP
Sbjct: 121 IKEELLQVPSCKHVFHIDCMNLWLASNSTCPLCRCSVIPTTRCSDPPVLVPPQLTPPPPP 180

Query: 181 P-AGSSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           P A S ELPL SNQTAEM SYSL HPQL QQQ GSSQSIC
Sbjct: 181 PLAASLELPLASNQTAEMVSYSLQHPQL-QQQIGSSQSIC 218

[Close]

BLAST of CmoCh15G013600 vs. ExPASy TrEMBL
Match: A0A6J1DWP0 (probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC111023829 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.1e-91
Identity = 188/215 (87.44%), Postives = 192/215 (89.30%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MG PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLS SSSSS
Sbjct: 1   MGLPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSFSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
              PPILPT+SN LTLYVTTACQVD KADNP++KLPKILFNEELR RDSLCCVCLGEFEI
Sbjct: 61  ---PPILPTSSNALTLYVTTACQVDSKADNPIEKLPKILFNEELRARDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVV-SPPPPPPAGS 180
           KEELLQVPSCKHVFHIDCMNHWLT+NSTCPLCRCSVIP  RC DPPV   SP  P P   
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTTNSTCPLCRCSVIPPIRCPDPPVAAPSPTLPLP--- 180

Query: 181 SELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           SELPLTSNQTAEM SYSL HPQL QQQEGSSQSIC
Sbjct: 181 SELPLTSNQTAEMVSYSLRHPQL-QQQEGSSQSIC 208

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BLAST of CmoCh15G013600 vs. NCBI nr
Match: XP_022928899.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata])

HSP 1 Score: 420.6 bits (1080), Expect = 8.0e-114
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
           SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180
           KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180

Query: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of CmoCh15G013600 vs. NCBI nr
Match: KAG6579565.1 (30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 3.7e-111
Identity = 210/212 (99.06%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 3   QPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 62
           +PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS
Sbjct: 191 KPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSS 250

Query: 63  FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 122
           FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE
Sbjct: 251 FPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKE 310

Query: 123 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 182
           ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL
Sbjct: 311 ELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSSEL 370

Query: 183 PLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           P TSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 371 PPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 402

[Close]

BLAST of CmoCh15G013600 vs. NCBI nr
Match: XP_022970098.1 (probable E3 ubiquitin-protein ligase RHA4A [Cucurbita maxima])

HSP 1 Score: 406.4 bits (1043), Expect = 1.6e-109
Identity = 209/214 (97.66%), Postives = 210/214 (98.13%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
           SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI
Sbjct: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180
           KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPP AGSS
Sbjct: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPSAGSS 180

Query: 181 ELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           E P TS+QTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 181 EPPPTSDQTAEMRSYSLLHPQLQQQQEGSSQSIC 214

[Close]

BLAST of CmoCh15G013600 vs. NCBI nr
Match: XP_023550207.1 (probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550208.1 probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.7 bits (1036), Expect = 1.0e-108
Identity = 209/218 (95.87%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSL----SSS 60
           MGQPQTPAPPHLYPQALQLKLYQAFIFSIPIL SIILFLLFYLFYLKRRASSL    SSS
Sbjct: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILVSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSSSSSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLG 120
           SSSSSSFPPILPTTSNTLTLY+TTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLG
Sbjct: 61  SSSSSSFPPILPTTSNTLTLYITTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLG 120

Query: 121 EFEIKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPP 180
           EFEIKEELLQVPSCKHVFHIDC+NHWLTSNSTCPLCRCSVIPTTRCFD PVVVSPPPPPP
Sbjct: 121 EFEIKEELLQVPSCKHVFHIDCINHWLTSNSTCPLCRCSVIPTTRCFDLPVVVSPPPPPP 180

Query: 181 AGSSELPLTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 215
           AGSSELP TSNQTAEMRSYSLLHPQLQQQQEGSSQSIC
Sbjct: 181 AGSSELPPTSNQTAEMRSYSLLHPQLQQQQEGSSQSIC 218

[Close]

BLAST of CmoCh15G013600 vs. NCBI nr
Match: XP_038907033.1 (probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida])

HSP 1 Score: 355.5 bits (911), Expect = 3.2e-94
Identity = 190/215 (88.37%), Postives = 197/215 (91.63%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           MG PQTP+PPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS
Sbjct: 1   MGLPQTPSPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60

Query: 61  SSFPPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEI 120
              PPILPTTSNTLTLYVTTACQVDLKADN ++KLPKI F+EEL+TRDSLCCVCLGEFEI
Sbjct: 61  ---PPILPTTSNTLTLYVTTACQVDLKADNLIEKLPKIQFDEELKTRDSLCCVCLGEFEI 120

Query: 121 KEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIPTTRCFDPPVVVSPPPPPPAGSS 180
           KE+LLQVPSCKHVFHIDCMNHWL SNSTCPLCRCSVIPTTRC DPP +   PPPP AGSS
Sbjct: 121 KEQLLQVPSCKHVFHIDCMNHWLISNSTCPLCRCSVIPTTRCSDPPGIA--PPPPLAGSS 180

Query: 181 ELPLTSNQTAEMRSYSLLHPQL-QQQQEGSSQSIC 215
           ELP TSNQTAEM SYSL H QL QQQQEGSSQSIC
Sbjct: 181 ELPPTSNQTAEMGSYSLQHLQLQQQQQEGSSQSIC 210

[Close]

BLAST of CmoCh15G013600 vs. TAIR 10
Match: AT4G24015.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-50
Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 0


Query: 1   MGQPQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSS 60
           M  PQ+P  PHLYPQA+QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSS S   
Sbjct: 1   MVDPQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPS--- 60

Query: 61  SSFPPILPTTSNTLT-LYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFE 120
              P ILP +S+  T  ++ + C +D+K +   DKL  +LFNEEL TRDSLCCVCLGEFE
Sbjct: 61  ---PMILPVSSSHQTSSHLPSVCLLDVKVELK-DKLHVVLFNEELGTRDSLCCVCLGEFE 120

Query: 121 IKEELLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSV 157
           +KEEL+++P CKH+FH+DC++ WL S++TCPLCR SV
Sbjct: 121 LKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of CmoCh15G013600 vs. TAIR 10
Match: AT1G33480.1 (RING/U-box superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 5.1e-26
Identity = 68/158 (43.04%), Postives = 100/158 (63.29%), Query Frame = 0


Query: 18  QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLY 77
           +LKLYQAFIFS+PI F+ I+  LFYL YL+R +S LSS    ++  P       N+L+  
Sbjct: 19  ELKLYQAFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLGMRTTFIP------GNSLST- 78

Query: 78  VTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHID 137
           +      +L+     + LP ++F E     DS C VCLG+++  ++L Q+P CKH FH+D
Sbjct: 79  IELGLSKELR-----EMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMD 138

Query: 138 CMNHWLTSNSTCPLCRCSVIP--TTRCFDPPV--VVSP 172
           C++ WLTS++TCPLCR ++IP  + +  D PV  +VSP
Sbjct: 139 CIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSP 164

[Close]

BLAST of CmoCh15G013600 vs. TAIR 10
Match: AT4G10150.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-25
Identity = 63/155 (40.65%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 4   PQTPAPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSF 63
           P+T AP +   ++ +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +++    SS     
Sbjct: 12  PETYAPSN-STESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRG 71

Query: 64  PPILPTTSNTLTLYVTTACQVDLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEE 123
              +PT +N  T       ++ L  D   + LP +++ E    +DS C VCLG+++ +E+
Sbjct: 72  GTFVPTNNNLST------AELGLSKDIR-EMLPVVIYKESFIVKDSQCSVCLGDYQAEEK 131

Query: 124 LLQVPSCKHVFHIDCMNHWLTSNSTCPLCRCSVIP 159
           L Q+PSC H FH++C++ WLTS++TCPLCR S+IP
Sbjct: 132 LQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 158

[Close]

BLAST of CmoCh15G013600 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-17
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 25  FIFSIPILFSIILFLLFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTTACQV 84
           FI  +PI   +I+ L+ Y+    RR S+ +   SS   F P    T+N L     +  ++
Sbjct: 24  FIVCVPICVILIVLLVLYIM---RRNSNTNVDWSSLGGFVP----TNNNL-----STAEL 83

Query: 85  DLKADNPVDKLPKILFNEELRTRDSLCCVCLGEFEIKEELLQVPSCKHVFHIDCMNHWLT 144
            L  D   + LP +++ E     D+ C VCLG+++ +E+L Q+PSC H FH++C++ WLT
Sbjct: 84  GLSKDIR-EMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLT 143

Query: 145 SNSTCPLCRCSVIP 159
           S++TCPLCR S+IP
Sbjct: 144 SHTTCPLCRLSLIP 144

[Close]

BLAST of CmoCh15G013600 vs. TAIR 10
Match: AT1G23980.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-14
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 26  IFSIPILFSIILFL-----LFYLFYLKRRASSLSSSSSSSSSFPPILPTTSNTLTLYVTT 85
           I  I +L S+I F+     L   +YLK++ S+LSSS + S+  P    + +    L    
Sbjct: 53  ILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLF 112

Query: 86  ACQVDLKADNPVDKLPKILFNEELRTRDSL-CCVCLGEFEIKEELLQVPSCKHVFHIDCM 145
                      +D LP  L+ E   T++   C VCL EF   ++L  +P+C H FHIDC+
Sbjct: 113 HLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172

Query: 146 NHWLTSNSTCPLCRCSVIPTTRCFDPP 167
           + WL SNSTCPLCR ++      F+ P
Sbjct: 173 DTWLLSNSTCPLCRGTLFSLGHQFEYP 199

The following BLAST results are available for this feature:

BLAST of CmoCh15G013600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TF5	4.2e-49	66.88	Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q570X5	7.2e-25	43.04	RING-H2 finger protein ATL58 OS=Arabidopsis thaliana OX=3702 GN=ATL58 PE=2 SV=1	[more]
Q9SN28	6.1e-24	40.65	RING-H2 finger protein ATL7 OS=Arabidopsis thaliana OX=3702 GN=ATL7 PE=2 SV=1	[more]
Q9SN27	4.7e-16	38.06	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q8GW38	4.8e-13	35.37	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]

BLAST of CmoCh15G013600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EM64	3.9e-114	100.00	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1I2V6	7.5e-110	97.66	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1H2A4	3.8e-93	86.94	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1K5R3	5.4e-92	86.82	probable E3 ubiquitin-protein ligase RHA4A OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1DWP0	2.1e-91	87.44	probable E3 ubiquitin-protein ligase RHA4A OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of CmoCh15G013600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928899.1	8.0e-114	100.00	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita moschata]	[more]
KAG6579565.1	3.7e-111	99.06	30S ribosomal protein S6 alpha, chloroplastic, partial [Cucurbita argyrosperma s...	[more]
XP_022970098.1	1.6e-109	97.66	probable E3 ubiquitin-protein ligase RHA4A [Cucurbita maxima]	[more]
XP_023550207.1	1.0e-108	95.87	probable E3 ubiquitin-protein ligase RHA4A isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_038907033.1	3.2e-94	88.37	probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida]	[more]

BLAST of CmoCh15G013600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24015.1	3.0e-50	66.88	RING/U-box superfamily protein	[more]
AT1G33480.1	5.1e-26	43.04	RING/U-box superfamily protein	[more]
AT4G10150.1	4.3e-25	40.65	RING/U-box superfamily protein	[more]
AT4G10160.1	3.3e-17	38.06	RING/U-box superfamily protein	[more]
AT1G23980.1	3.4e-14	35.37	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 111..152 e-value: 0.0011 score: 28.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..153 e-value: 4.3E-12 score: 46.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 111..153 score: 12.017182
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..158 e-value: 7.2E-17 score: 62.8
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 5..168
None	No IPR available	PANTHER	PTHR22765:SF187	E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED	coord: 5..168
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 92..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G013600.1	CmoCh15G013600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0061630	ubiquitin protein ligase activity