CmoCh15G013150 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G013150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S10-like
Location	Cmo_Chr15: 9030753 .. 9032783 (-)
RNA-Seq Expression	CmoCh15G013150
Synteny	CmoCh15G013150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCTGCCGCTTCTTCCTGCCGCCGCCGATCACTCCGACAAAATGGTACGCCGTTTATCCTTTCACCGTACATTTAACACCCAAGTTTCTTCTTTTGTTCAACCAGAAACCAATGGAAAATGTTAGTAAGATTTGAAGGAAATATAATTAGTTGTTAATCTCGTTGAGGGCTCGTTCATTCGCACCGTTCATCAATGCGTTTGGTTGGTTTTCGATTGGGATTGGGTTTTGGGACTTTGGATGCAATTAGTGTTACCGGCCTGAACTCTGGATTTTGAAGTGTCTTTATTTTGTTGTTCATGATTCTAATCGACCCTCAACGGGGAGTAAATCTGTTTAAACGATCCGAACGTTGTCTTTTTAGATCATTTCAGAGAAGAACCGCCGAGAGATCTCGAAGTACCTCTTTCAAGGTAGTGAATTTTACTTTCTTGTGCGTTTGTTGTGGTTAGGGTTTTTTTTTTCCCTTCTTCTCTTCGTCTGTTTGTTTATTTTTTGTTTGTTGCTGTTTTGTATTAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGGTAAATCTTCTGCTGCTTTGCATATGATAGATGATTTCCATACTTCTGCTTATTGGTTTTTCCTGAACTTTGTGCTGGTTTTAGCTTGTTGATTTACTCTGTATGTTGGATAATTTTAGTTCTAAATGGTCTACTACTGCTTTGACTAGATTGGATTTGGAAATTTATCCTTTTACCTTGATACTACGGTGCTACTGATTCTGCACTTTGCTGGTCTTTGAATCATTTTGTAGTTTGATTTTGATTATCCTTTTATCCTCTTACTTTTGAATAGTGGCCCGTCAAGATTTGATGGGGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGTGGTCCTCGCGGAGCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGTAAGCAATTTTACCACTCCTAGGATAACCCAACTCTTGATATTCCTATCTAAGTTAGATTTGTTTGCTATGCCATCTAGAGATTGTTTGATCTTGATATTTCGCATCTTAGTTACAGTCCACTCCCCCAGTTGGGGGTATCAAAGTCAATAACTTTCTAATTGTTGGTTATTGGTTCTTTAACATCGTAGGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGAGAGAACATCATAGATGTATGGGATTGTTTTTGTTAGTTTTAGTTTTGAAGCATGTTGAATCGAAGATGTTAAATTAAACTCATGAGATCATATCAGTTTTGTTTGCCTATAATCAATTGTCAGATCTTTGATTGCTGAAGTCTTTTGATTCCCCCTCTCCTATTGCTGATTCCCAAAACTCTGTTCTCACCATGTTTAGATTGTGAATTAATCAACTTATCCCAGAAGCATTCTAGTTCACTGCCTGCCTCATCCATTTTCAATTTGTTGCTGTAGTTCAGTCTTCCATAGTAATCAAATAGCATTGCATATATGTGAGTATTATGTCTGTGGGAAGAGGATGATTAGCCCATGTGAAATCTCTTCAAATGAATTTGACATCTCCATGAACTGGAGGGAAAGAGCCCTGGAACAATGGTCTGTATGTACTTTTGTTACTTTAGCGGGCTTTGATGCTCCAAGGAATGCGACCTTGAATCTGTATGTACTTTGTGTACTGTACGGTGCATTTGGAGCAGAAATG

mRNA sequence

CTGTGAAGGAAGATTGTGAAAGGGTTTCTCTCTTAGCTGCTGCCGCTTCTTCCTGCCGCCGCCGATCACTCCGACAAAATGATCATTTCAGAGAAGAACCGCCGAGAGATCTCGAAGTACCTCTTTCAAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGTGGCCCGTCAAGATTTGATGGGGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGTGGTCCTCGCGGAGCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGAGAGAACATCATAGATGTATGGGATTGTTTTTGTTAGTTTTAGTTTTGAAGCATGTTGAATCGAAGATGTTAAATTAAACTCATGAGATCATATCAGTTTTGTTTGCCTATAATCAATTGTCAGATCTTTGATTGCTGAAGTCTTTTGATTCCCCCTCTCCTATTGCTGATTCCCAAAACTCTGTTCTCACCATGTTTAGATTGTGAATTAATCAACTTATCCCAGAAGCATTCTAGTTCACTGCCTGCCTCATCCATTTTCAATTTGTTGCTGTAGTTCAGTCTTCCATAGTAATCAAATAGCATTGCATATATGTGAGTATTATGTCTGTGGGAAGAGGATGATTAGCCCATGTGAAATCTCTTCAAATGAATTTGACATCTCCATGAACTGGAGGGAAAGAGCCCTGGAACAATGGTCTGTATGTACTTTTGTTACTTTAGCGGGCTTTGATGCTCCAAGGAATGCGACCTTGAATCTGTATGTACTTTGTGTACTGTACGGTGCATTTGGAGCAGAAATG

Coding sequence (CDS)

ATGATCATTTCAGAGAAGAACCGCCGAGAGATCTCGAAGTACCTCTTTCAAGAGGGAGTTTGCTATGCGAAGAAGGACTACAATCTAGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATAAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTTCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCAGAAATTGTCCCGGCTACCTTGAAGAAGCAAGCCAAGCCAGCTGGTCGACCCTTTGGTGGCCCATCTGGAGACCGCCCACGTGGCCCGTCAAGATTTGATGGGGAAAGAAGATTTGGTGACCGAGATGGCTACCGTGGTGGTCCTCGCGGAGCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCTTTTGGAGGTCCTGGTGGAAGGCCTGGTTTTGGCCGTGGAGCTGGTGGATATGGAGGAGCACCTGCACCATCAAATCTTGAATGA

Protein sequence

MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE

Homology

[Close]

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.6e-73
Identity = 146/177 (82.49%), Postives = 157/177 (88.70%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 -RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
            RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.0e-73
Identity = 145/183 (79.23%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGE 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 R-RFGDRDGYRGGPRGAGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPS 180
           R RFGDRDGYRGGPRGA GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSS 180

[Close]

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.0e-73
Identity = 145/183 (79.23%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+
Sbjct: 1   MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGE 120
           W +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+
Sbjct: 61  WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120

Query: 121 R-RFGDRDGYRGGPRGAGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPS 180
           R RFGDRDGYRGGPRGA GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S
Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSS 180

[Close]

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-71
Identity = 145/181 (80.11%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGE 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGE
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGE 120

Query: 121 RRFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSN 179
           RRFGDRDGYRGGP+ +GG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+
Sbjct: 121 RRFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSD 179

[Close]

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 264.6 bits (675), Expect = 8.0e-70
Identity = 143/178 (80.34%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 -RFGDRDGYRGGPRGAGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
            RFGDRDGYR GPR AGG+F G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRAGPR-AGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL
Match: A0A6J1ESX8 (40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 3.0e-96
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL
Match: A0A6J1I4J7 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL
Match: A0A6J1DW67 (transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.6e-95
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           +IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 323 LIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 382

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 383 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 442

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 443 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL
Match: A0A5A7TIX3 (40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002270 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.8e-95
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL
Match: A0A0A0KK65 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 9.8e-95
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MII EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. NCBI nr
Match: XP_022928970.1 (40S ribosomal protein S10-1-like [Cucurbita moschata])

HSP 1 Score: 360.9 bits (925), Expect = 6.3e-96
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. NCBI nr
Match: XP_023549574.1 (40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ribosomal protein S10-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 178/179 (99.44%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. NCBI nr
Match: XP_022970109.1 (40S ribosomal protein S10-1-like [Cucurbita maxima])

HSP 1 Score: 358.6 bits (919), Expect = 3.1e-95
Identity = 178/179 (99.44%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGAPAPSNLE
Sbjct: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGAPAPSNLE 179

[Close]

BLAST of CmoCh15G013150 vs. NCBI nr
Match: KAG7016989.1 (40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.8 bits (917), Expect = 5.3e-95
Identity = 177/178 (99.44%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123

Query: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183

Query: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           FGDRDGYRGGPRG+GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 241

[Close]

BLAST of CmoCh15G013150 vs. NCBI nr
Match: XP_022158473.1 (transcription factor MYB39-like [Momordica charantia])

HSP 1 Score: 357.8 bits (917), Expect = 5.3e-95
Identity = 177/179 (98.88%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           +IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 323 LIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 382

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER
Sbjct: 383 WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 442

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 180
           RFGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 443 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of CmoCh15G013150 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-74
Identity = 146/177 (82.49%), Postives = 157/177 (88.70%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDR 120

Query: 121 -RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
            RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of CmoCh15G013150 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-72
Identity = 145/181 (80.11%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETF 60
           MIISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETF
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 61  AWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGE 120
           AWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGE
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGE 120

Query: 121 RRFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSN 179
           RRFGDRDGYRGGP+ +GG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+
Sbjct: 121 RRFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSD 179

[Close]

BLAST of CmoCh15G013150 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 264.6 bits (675), Expect = 5.7e-71
Identity = 143/178 (80.34%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDR 120

Query: 121 -RFGDRDGYRGGPRGAGGDF-GDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
            RFGDRDGYR GPR AGG+F G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 121 PRFGDRDGYRAGPR-AGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of CmoCh15G013150 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-59
Identity = 123/176 (69.89%), Postives = 133/176 (75.57%), Query Frame = 0


Query: 1   MIISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFA 60
           MIISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP               
Sbjct: 61  WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGP--------------- 120

Query: 121 RFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 177
                          GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 121 --------------RGGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 144

[Close]

BLAST of CmoCh15G013150 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-52
Identity = 109/135 (80.74%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 46  MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 105
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 106 SGDRPRGPSRFDGERRFGDRDGYRGGPRGAGGDFGDKGGAPADYRPSF-GGPGG-RPGFG 165
            GDRPRGP R DGERRFGDRDGYRGGP+ +GG++GDK GAPADY+P F GG GG R GFG
Sbjct: 61  GGDRPRGPPRGDGERRFGDRDGYRGGPK-SGGEYGDKAGAPADYQPGFRGGAGGARQGFG 120

Query: 166 RGAGGYGGAPAPSNL 179
           RGAGG+GG  A S+L
Sbjct: 121 RGAGGFGGGAAGSDL 133

The following BLAST results are available for this feature:

BLAST of CmoCh15G013150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW09	1.6e-73	82.49	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
P0DKK8	2.0e-73	79.23	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	2.0e-73	79.23	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9FFS8	2.5e-71	80.11	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]
Q9LTF2	8.0e-70	80.34	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]

BLAST of CmoCh15G013150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESX8	3.0e-96	100.00	40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 P...	[more]
A0A6J1I4J7	1.5e-95	99.44	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=...	[more]
A0A6J1DW67	2.6e-95	98.88	transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 P...	[more]
A0A5A7TIX3	9.8e-95	98.32	40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0KK65	9.8e-95	98.32	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800...	[more]

BLAST of CmoCh15G013150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928970.1	6.3e-96	100.00	40S ribosomal protein S10-1-like [Cucurbita moschata]	[more]
XP_023549574.1	1.4e-95	99.44	40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ...	[more]
XP_022970109.1	3.1e-95	99.44	40S ribosomal protein S10-1-like [Cucurbita maxima]	[more]
KAG7016989.1	5.3e-95	99.44	40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_022158473.1	5.3e-95	98.88	transcription factor MYB39-like [Momordica charantia]	[more]

BLAST of CmoCh15G013150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	1.1e-74	82.49	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	1.8e-72	80.11	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	5.7e-71	80.34	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	1.3e-59	69.89	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	1.6e-52	80.74	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 3..94 e-value: 1.1E-42 score: 144.0
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..104 e-value: 2.1E-47 score: 161.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..128
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 1..178
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G013150.1	CmoCh15G013150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome