CmoCh15G012330 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCCTAAAGGGGTCGTCCTCTTTCGCATTGGGTGCTCTGTTATCGAGTAGTAATGGCAGTCTCTTCTGCTCAGAGTCTTCAACCTCAGATTAATGTTTCCCAGCCTTCTCTCAGGTTCTCCCTCTATTCCGATTAACAGTTAAAATTGATGCTATTCGCGACGCTTGCCTGATTTCGTTTTGGTTTTTTGAATTTTGCAAGCGTTGCGACGAAGGTTTTCTCGGGACTGAAGCTTCAATCTGCTAGTGAGTTTGCTATCCTTTCCTTCTCGTGATATCACTTACCTGTTTCACCGCTCGTTAATCACATATTGCTTCTGTTTTTTTATTCAAATTTTAAGGTCCATTCGGAGGAGCAAAACCTAATATTACTACTGAATTCTATGGAAAAGTTCATAAAAGTCTACAAGCCAGGTATTGTAGCGCTATTTTCATTTTTTTTTGTGTGTTGGAATCACATTCTTCAAAATTGAATATCCTATTAAATTATGGTGATATTAAACAATTGAAAATCTTGGACTTCATGACATCTATGCTTTTCAAGGATGAAGAAGTGGAAGTACACCGTTGTAGTACTTATTTTTTATGCTGAAATGGCTTGCTTTATTACTCTCAACTCCTACCTCATATGACGGCTATTTACACATCGTGTTTCATCTATTTCCTTAATGAAATATTATCCTTTCACGGTTTGAAAAATCATGCGATATTATTGCACGGAGTCAGGAGAGATTGACTTGAAATGCCTTCTTTTTGCGTAGTGTGCAGAAATGATCGAATATTACGACTGTTCTACTGAATATAGGAACTGCACTACTTTTCTTGCGCCCTTTGAATGTTTTTTCTTTTCCTTCAGTTGCTGAATTTTAGTGTTTGGAGTAACGTGGTCATATGTGATGTGCCTATTTGTGAATATTTAGGCCTCTTGGATAGTGCTTTCATTTTTAGCTTTCTGCTTTTGTAATTTATGTTTTTTTCTCACATTTTTTTAGTACGGTTTTCACCTTTCTTAAACAAATATTTGAATTTTCAGTAAAATTCAAAATGTTGACAGAAAGTTGATAACATCAAAGAACGTTATAGGTGAAAGTAGTGTTCTAAATTAAAAACAAAATTATTATCAAATAGATCTTAGTTATTCTTTTATATTTTCCATTCAAACCTTTGTTGGTGTTTGAAGGTGATTCCGATTCTACTGGTTGGTGCTTTCTGTATCAATGGCATCTGTTAGGATAACTAAAGTTTTAAGACAAATGCAAAGAGAAGGCGTTTCAGTAGCATCCTATCCTACTTGTATTCGTATGGCAGTCGATGCATTTCTTCTATTCATACTTGACATGCAGGACGTATAACACAAAGGCTACTCGTGCACAATTTCAGATGATGCCTATAGGGACACCGCGGGGTGCCTTACAGAGTGCCTGACGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTAGTAAGTGATAGATCTAGTTATGTAATTTTGCTCCAACTGAGGCTGAGAGAAATCTTAGATTGACATTATGGGACTCACCGCCATGACACATGAGTTTCAATGGCTTCAATTAATTCATCACAAATTTACTATTAACATCAGTGTAAAACTATTCACAGTAGAATGCTGCTGCTGCAGGTTTTATCATTTTGTTACTTCATTTCCTTTTTCTTTCCTGTCCAATTATACCGAAGTAAACTTCTTTTAGCTAGGAGCTATGAATGTCAAAATCAACTTTAAAAAAAAAAAAAAAAAAAAAAATAGAATGTACTGATTTTTTATAATCTCGACTTTCTTCTTGTGTTCAGTATCGAGAACGAGTTGTCTTCATTGGGCTGAACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCCACAATACTATATCTTGACAGCATTGAAACTTCCAAAAAACTCTACATGTACATAAATGGCCCAGGTGGAGATGTGAGTTCAGCATATACATATCTTCTATTGGGACGAGGTTCATCGTAATTATCTGTTATATTTTCCTTCTCTTTTGGTTATATTCTAATGGTTCGTTTAGCATTATTTTCCTAATGAAACCATGCATCTTTGCAGCTAACTCCAAGTATGGCCATCTACGACACAATGCAGAGCTTGCAGAGTCCTGTAGCTACTCATTGCGTTGGTTATGCCTATAATCTAGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGTAAATACTTCAATTTGTATTGTCAAACAAAATTTAGTGTCGTAAGGCAGTAGGTGTTGCTCAAACTATGACTTCGGAATTTGTAGGGAGTTCTTCAGTATGGTAAAAGTGACCCCTATTTTTCAGCCGGTTAAATCATTTTAACTCCATCAAGAAATATTTTTTTGTGACTTGATAAACAAATCTCAACCAAATTTGCATCCAATAAACTTGGAAATGCTCATTACTTGTGCCTGGCTGCCCCCAATTTACGGATTTTATGGAATTTTCATGCTCTTAGTGAAAACTGTCTCCCCGCTTGTTAGCCTCCTTCTATCTGTGTGGTTGAACCTACTTTCTGGTTTCTTCGCTTTTCTCTTATAAATCAAACCACACATTTCCTTGTTTAGGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGGTATCATTAATTTGTTATATAATGTCATGCAAATTGATCACATATGCCCGTCTTAAGTTTTGAACATTTTGTTCTGATACATTTTTGTTTGAAAATCCTTTTGGCAGGCTGATGACATTCGAAATGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTATGATGAGCTTTCTAAAAAAACAGGCCAGCCTGTTTAAAAGGTCAGTTCGTCCACACCTTAGCAAACATATAGCATATCTTTATTCATAATGAAACATATTAGCAGGGAGATGACCAACACGGTTTCTTGTTTATGAAACTTGATCTTCTACGATCATGCAAAATTATCACATTCATAGTTCACTCATGTCAATTTTGAAACTTATCTCATATTAAAGTTGAAATGATTCTGAGGAATGCAACCTTAATTTAGAGACCTTGTCAATGGATAAATGCAGATTATCAAGGACATGAATCGAATGAAGCGATTTACTGCCCAGCAAGCTCTTGATTATGGACTCATAGACCGTATAGTTAGGCCACCTCGCATTAAGGCTGATGCACCTCGCAAGGATCCTGAAAGTGAGAATTTCCTAAAAAGTAAAAGATTAATTTGCAATTTTCAAACTCATTTCGTATCTATTATTGTGTCCACTTTGACCAATAAATCAACAGAATTGTGCGTTTTCTTATTTAAATTCTTTTTTTCTATTTGAAAAGTATCTTAATTTTAATTATCATTTCATGGTTA ACCCTAAAGGGGTCGTCCTCTTTCGCATTGGGTGCTCTGTTATCGAGTAGTAATGGCAGTCTCTTCTGCTCAGAGTCTTCAACCTCAGATTAATGTTTCCCAGCCTTCTCTCAGCGTTGCGACGAAGGTTTTCTCGGGACTGAAGCTTCAATCTGCTAGTCCATTCGGAGGAGCAAAACCTAATATTACTACTGAATTCTATGGAAAAGTTCATAAAAGTCTACAAGCCAGAGTGCCTGACGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTATATCGAGAACGAGTTGTCTTCATTGGGCTGAACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCCACAATACTATATCTTGACAGCATTGAAACTTCCAAAAAACTCTACATGTACATAAATGGCCCAGGTGGAGATCTAACTCCAAGTATGGCCATCTACGACACAATGCAGAGCTTGCAGAGTCCTGTAGCTACTCATTGCGTTGGTTATGCCTATAATCTAGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGGCTGATGACATTCGAAATGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTATGATGAGCTTTCTAAAAAAACAGGCCAGCCTGTTTAAAAGATTATCAAGGACATGAATCGAATGAAGCGATTTACTGCCCAGCAAGCTCTTGATTATGGACTCATAGACCGTATAGTTAGGCCACCTCGCATTAAGGCTGATGCACCTCGCAAGGATCCTGAAAGTGAGAATTTCCTAAAAAGTAAAAGATTAATTTGCAATTTTCAAACTCATTTCGTATCTATTATTGTGTCCACTTTGACCAATAAATCAACAGAATTGTGCGTTTTCTTATTTAAATTCTTTTTTTCTATTTGAAAAGTATCTTAATTTTAATTATCATTTCATGGTTA ATGGCAGTCTCTTCTGCTCAGAGTCTTCAACCTCAGATTAATGTTTCCCAGCCTTCTCTCAGCGTTGCGACGAAGGTTTTCTCGGGACTGAAGCTTCAATCTGCTAGTCCATTCGGAGGAGCAAAACCTAATATTACTACTGAATTCTATGGAAAAGTTCATAAAAGTCTACAAGCCAGAGTGCCTGACGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTATATCGAGAACGAGTTGTCTTCATTGGGCTGAACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCCACAATACTATATCTTGACAGCATTGAAACTTCCAAAAAACTCTACATGTACATAAATGGCCCAGGTGGAGATCTAACTCCAAGTATGGCCATCTACGACACAATGCAGAGCTTGCAGAGTCCTGTAGCTACTCATTGCGTTGGTTATGCCTATAATCTAGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGGCTGATGACATTCGAAATGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTATGATGAGCTTTCTAAAAAAACAGGCCAGCCTGTTTAA MAVSSAQSLQPQINVSQPSLSVATKVFSGLKLQSASPFGGAKPNITTEFYGKVHKSLQARVPDEGTWQWVDLWNALYRERVVFIGLNVDEEFSNQILATILYLDSIETSKKLYMYINGPGGDLTPSMAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGEKGNRSAMPLSRIALQPPSGAARGQADDIRNEANELLRIRDYLYDELSKKTGQPV Homology
BLAST of CmoCh15G012330 vs. ExPASy Swiss-Prot
Match: Q9XJ36 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR2 PE=1 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 4.7e-77 Identity = 147/221 (66.52%), Postives = 175/221 (79.19%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy Swiss-Prot
Match: Q8DJZ9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=clpP2 PE=3 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 8.5e-42 Identity = 83/155 (53.55%), Postives = 110/155 (70.97%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy Swiss-Prot
Match: Q8YP43 (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=clpP3 PE=3 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 2.3e-39 Identity = 79/155 (50.97%), Postives = 107/155 (69.03%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy Swiss-Prot
Match: Q3MDK7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=clpP2 PE=3 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39 Identity = 79/155 (50.97%), Postives = 107/155 (69.03%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy Swiss-Prot
Match: Q5N1Q7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpP2 PE=3 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 1.7e-37 Identity = 78/160 (48.75%), Postives = 109/160 (68.12%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy TrEMBL
Match: A0A6J1DZ88 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111024880 PE=3 SV=1) HSP 1 Score: 370.2 bits (949), Expect = 6.0e-99 Identity = 189/238 (79.41%), Postives = 201/238 (84.45%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy TrEMBL
Match: A0A1S3ATH1 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103482668 PE=3 SV=1) HSP 1 Score: 362.8 bits (930), Expect = 9.6e-97 Identity = 184/238 (77.31%), Postives = 197/238 (82.77%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy TrEMBL
Match: A0A0A0KKQ7 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_5G157950 PE=3 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 1.3e-93 Identity = 178/238 (74.79%), Postives = 199/238 (83.61%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy TrEMBL
Match: A0A6J1H153 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111459199 PE=3 SV=1) HSP 1 Score: 350.5 bits (898), Expect = 4.9e-93 Identity = 180/238 (75.63%), Postives = 195/238 (81.93%), Query Frame = 0
BLAST of CmoCh15G012330 vs. ExPASy TrEMBL
Match: A0A6J1JZK9 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111491133 PE=3 SV=1) HSP 1 Score: 349.0 bits (894), Expect = 1.4e-92 Identity = 178/238 (74.79%), Postives = 195/238 (81.93%), Query Frame = 0
BLAST of CmoCh15G012330 vs. NCBI nr
Match: XP_038906920.1 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Benincasa hispida]) HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99 Identity = 192/238 (80.67%), Postives = 200/238 (84.03%), Query Frame = 0
BLAST of CmoCh15G012330 vs. NCBI nr
Match: XP_022158384.1 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Momordica charantia]) HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98 Identity = 189/238 (79.41%), Postives = 201/238 (84.45%), Query Frame = 0
BLAST of CmoCh15G012330 vs. NCBI nr
Match: XP_008437161.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Cucumis melo]) HSP 1 Score: 362.8 bits (930), Expect = 2.0e-96 Identity = 184/238 (77.31%), Postives = 197/238 (82.77%), Query Frame = 0
BLAST of CmoCh15G012330 vs. NCBI nr
Match: XP_004147568.1 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Cucumis sativus] >KGN50188.1 hypothetical protein Csa_000125 [Cucumis sativus]) HSP 1 Score: 352.4 bits (903), Expect = 2.7e-93 Identity = 178/238 (74.79%), Postives = 199/238 (83.61%), Query Frame = 0
BLAST of CmoCh15G012330 vs. NCBI nr
Match: XP_022957748.1 (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Cucurbita moschata] >KAG6606148.1 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036093.1 ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 350.5 bits (898), Expect = 1.0e-92 Identity = 180/238 (75.63%), Postives = 195/238 (81.93%), Query Frame = 0
BLAST of CmoCh15G012330 vs. TAIR 10
Match: AT1G12410.1 (CLP protease proteolytic subunit 2 ) HSP 1 Score: 288.9 bits (738), Expect = 3.4e-78 Identity = 147/221 (66.52%), Postives = 175/221 (79.19%), Query Frame = 0
BLAST of CmoCh15G012330 vs. TAIR 10
Match: ATCG00670.1 (plastid-encoded CLP P ) HSP 1 Score: 128.6 bits (322), Expect = 5.8e-30 Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 0
BLAST of CmoCh15G012330 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 ) HSP 1 Score: 126.7 bits (317), Expect = 2.2e-29 Identity = 59/144 (40.97%), Postives = 98/144 (68.06%), Query Frame = 0
BLAST of CmoCh15G012330 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 ) HSP 1 Score: 120.2 bits (300), Expect = 2.1e-27 Identity = 60/137 (43.80%), Postives = 92/137 (67.15%), Query Frame = 0
BLAST of CmoCh15G012330 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 ) HSP 1 Score: 109.0 bits (271), Expect = 4.8e-24 Identity = 52/148 (35.14%), Postives = 93/148 (62.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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