CmoCh15G011340 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G011340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pectin lyase-like superfamily protein
Location	Cmo_Chr15: 7883841 .. 7885751 (-)
RNA-Seq Expression	CmoCh15G011340
Synteny	CmoCh15G011340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCGCGTCTAAGTTCGAACACTCTGAAATTTCAGGCCATCAATTGTCGGAAACACTCGGCGTTGCTGACGGAGTTTGGCGGTGTCGGCGACGGAGTAACTTCAAATACTAACGCGTTCCGAAAAGCGATTGAACATCTTAGCACACTTGCGGCGGATGGTGGTGCTCAATTGATCGTGCCGCCGGGGAAATGGCTGACCGGAAGTTTTAATCTGACTAGCCATTTCACACTTTTTATCGATAAAGAAGCAAAAATTCTTGCATCCCAGGTTCGACCTATCGAGTATTTTATTTTTATAAAGCTAACAACTTTGGGAGTGGTGATTTGAATTTTAATTTTTAATCGAAATTAAATGAGTTAAATTTGTTCGTCGTAATTTAATGGTGCAGAAAGAATCAGAGTGGCCACTTGTGGAAGTTCTCCCATCTTATGGGAGGGGAAGAGAGGCTCCGGGTGGACGGTACAACAGCCTCATTTTTGGAACTAATCTCACCGATGTGGTTATCACAGGTGATTATTTTTCTTTTAACATTCTAATTTTTTTAAATGGTTTGCAAAATTATAATCTTATAAGCTTTCTTGCTATCAGAATTAAATAAAAAAAATTTAAGGTAAATGAAAACATAAAAAAAACATTTATAGAAAATAAAGTCGGGTTGGTGACATGGTGTAGGTAACAATGGTACAATCCACGGGCAAGGATCTTCTTGGTGGGAAAAATTTAAGAAAGGGGAGCTCAAGGTAACACGACCGCATGTGATCGAGATCATGTACTCTGATCAAATCCAAATCTCCGATCTCACTTTGATCAACTCACCTTTTTGGTGTGTCCATCCGATTTATAGCAGGTTTGACTATTTCACTTTACTCTCATTATTCTTATATTTTAGGATTATGCTGGAAGAAAAAAAAAATTAAAACTTGTAATAATATACCGTTCAAATCATTCCCAACTAATTTTTTTTTGATATATATATATATATATGTATAGATTTATATTATTATGATTTATTTTTAATTTAGTTTGGTTGGGTTGGGTGAAAATGCAGAAATGTGATTATCCAAGGGCTCACCATCTTAGCTCCCGTCACCGTACCCAACACTGACGGAATCAATCCAGGTTTTCTTCTTCTTCACCTTTAAAACCTCATGGTTCTTTTCTTCGTCAATCCCTCTCCCTAATTCTCTATTCAATTTATCAGATTCTTGTTCCAACATTCGAATCGAAGACTGCTACATTGTCTCCGGTGACGATTGCATCGCCATCAAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

mRNA sequence

ATGAATCCGCGTCTAAGTTCGAACACTCTGAAATTTCAGGCCATCAATTGTCGGAAACACTCGGCGTTGCTGACGGAGTTTGGCGGTGTCGGCGACGGAGTAACTTCAAATACTAACGCGTTCCGAAAAGCGATTGAACATCTTAGCACACTTGCGGCGGATGGTGGTGCTCAATTGATCGTGCCGCCGGGGAAATGGCTGACCGGAAGTTTTAATCTGACTAGCCATTTCACACTTTTTATCGATAAAGAAGCAAAAATTCTTGCATCCCAGAAAGAATCAGAGTGGCCACTTGTGGAAGTTCTCCCATCTTATGGGAGGGGAAGAGAGGCTCCGGGTGGACGGTACAACAGCCTCATTTTTGGAACTAATCTCACCGATGTGGTTATCACAGGTAACAATGGTACAATCCACGGGCAAGGATCTTCTTGGTGGGAAAAATTTAAGAAAGGGGAGCTCAAGGTAACACGACCGCATGTGATCGAGATCATGTACTCTGATCAAATCCAAATCTCCGATCTCACTTTGATCAACTCACCTTTTTGAAATGTGATTATCCAAGGGCTCACCATCTTAGCTCCCGTCACCGTACCCAACACTGACGGAATCAATCCAGATTCTTGTTCCAACATTCGAATCGAAGACTGCTACATTGTCTCCGGTGACGATTGCATCGCCATCAAGAGCGGATGGGACCAATATGGTATCAAGTTCGGAATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

Coding sequence (CDS)

ATGCCGACCGAAGACCTTGTCATTCGCCGCCTCACTTGCATCTCACCAGATTCTGCAGGTATCGCCCTTGGTAGCGAAATGTCTGGCGGAATTCGCAACGTCAGGATCGAAAACGTCACTGCAATCAATACACAGTCTGCTGTCAGAATCAAAACTGCTCGCGGACGAGGTGGTTTCGTCAAGGACATTTTCGTCCGAAGAATGTTTCTATCCACGATGAAATACGTCTTCTGGATGACTGGAGACTACAAATCGCATGCAGATGACAAGTTTGATCCCTCGGCATTGCCAGTGATTAAGAACATTAATTATAGAGACGTGGTTGCTGAGAATGTTAATATGTCAGCAAATTTGGCAGGGATATCGGGAGATCCATTCACGGATATTTGTATGTCGAATGTAAAGATTGGATTGTCGAAGAAGCCTAAAAAGTTGCAGTGGAACTGTACGGATGTTGAGGGATTTAGTAGCGATGTGGATCCGCCGCCATGTGCTCCACTGGCTAAAGCAGTGAAAAACGGTGGATGTGACTTTCCCGAGGACAAGCTGCCAATTGAGAATGTTGAGCTGAAGTCATGCTCCGTTGAAATTCCTGCCTTTTAA

Protein sequence

MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFVKDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAGISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPEDKLPIENVELKSCSVEIPAF

Homology

[Close]

BLAST of CmoCh15G011340 vs. ExPASy Swiss-Prot
Match: A7PZL3 (Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-66
Identity = 124/199 (62.31%), Postives = 151/199 (75.88%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI++VR E++ AIN++S +RIKT  GRGG+V
Sbjct: 289 MPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYV 348

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+VR M + TMK+ FWMTG+Y SHAD+ +DP A PVI+ INYRD+VAENV+M+A L G
Sbjct: 349 KDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEG 408

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAK--AVKNGGCDF 180
           I  DPFT IC+SNV I L+ K KK+ W CTDVEG SS V P PC+ L      K   C+F
Sbjct: 409 IPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGPEKTSLCNF 468

Query: 181 PEDKLPIENVELKSCSVEI 198
           P + LPI+ VEL+ CS  I
Sbjct: 469 PAESLPIDTVELQKCSYGI 487

[Close]

BLAST of CmoCh15G011340 vs. ExPASy Swiss-Prot
Match: P27644 (Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-07
Identity = 37/119 (31.09%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 14  ISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKT-ARGRGGFVKDIFVRRMFLST 73
           + P   G+ +GSEMSGG+ +V +E+   I T   +R+KT AR  GG V +I +RR+ L  
Sbjct: 126 MQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDG 185

Query: 74  MKYVFWMTGDYKSHADDKFD----------PSALPVIKNINYRDVVAENVNMSANLAGI 122
           ++        Y   AD   D              P +  I   DV   N+   A+ AG+
Sbjct: 186 VQTALSANAHYHCDADGHDDWVQSRNPAPVNDGTPFVDGITVEDVEIRNL---AHAAGV 241

[Close]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL
Match: A0A6J1E7Y4 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430234 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.7e-111
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 399 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 458

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 459 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 518

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE
Sbjct: 519 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 578

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENVELKSCSVEIPAF
Sbjct: 579 DKLPIENVELKSCSVEIPAF 598

[Close]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL
Match: A0A6J1E3E2 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430236 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.2e-110
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 282 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 341

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSA+PVIKNINYRDVVAENVNMSANLAG
Sbjct: 342 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSAMPVIKNINYRDVVAENVNMSANLAG 401

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 402 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAAKSGGCDFPE 461

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENVELKSCSVEIPAF
Sbjct: 462 DKLPIENVELKSCSVEIPAF 481

[Close]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL
Match: A0A6J1I677 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471479 PE=3 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 4.6e-109
Identity = 196/200 (98.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTE LVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 315 MPTEYLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 374

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 375 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 434

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 435 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAAKSGGCDFPE 494

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENV+LKSCSVEIPAF
Sbjct: 495 DKLPIENVQLKSCSVEIPAF 514

[Close]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL
Match: A0A6J1IBV8 (probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471546 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 185/200 (92.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTE+LV+RRLTCISPDSAGIALGSEMSGGIRN+RIENVTAINT+SAVRIKTARGRGG+V
Sbjct: 281 MPTENLVVRRLTCISPDSAGIALGSEMSGGIRNIRIENVTAINTESAVRIKTARGRGGYV 340

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFL+TMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENV MSANLAG
Sbjct: 341 KDIFVRRMFLTTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVTMSANLAG 400

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGD FTDIC+SNVKIGLS KPKK+QWNCTD+EGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 401 ISGDLFTDICVSNVKIGLSVKPKKVQWNCTDIEGFSSDVDPPPCAPLAKAAKSGGCDFPE 460

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENV+LKSCSVEIPAF
Sbjct: 461 DKLPIENVQLKSCSVEIPAF 480

[Close]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL
Match: A0A6J1E7Z5 (probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430246 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.5e-104
Identity = 186/200 (93.00%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 281 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 340

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFW+TGDYKSHADDKFDPSALP+IKNINYRDVVAENVNMSANLAG
Sbjct: 341 KDIFVRRMFLSTMKYVFWITGDYKSHADDKFDPSALPLIKNINYRDVVAENVNMSANLAG 400

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDIC+SNVKIGLS  PKKLQWNCT++EGF SDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 401 ISGDPFTDICVSNVKIGLSATPKKLQWNCTNIEGFCSDVDPPPCAPLAKAAKSGGCDFPE 460

Query: 181 DKLPIENVELKSCSVEIPAF 201
           D+LPIENV+LKSC VEIP F
Sbjct: 461 DQLPIENVQLKSCLVEIPTF 480

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: XP_022922170.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 3.5e-111
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 399 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 458

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 459 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 518

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE
Sbjct: 519 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 578

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENVELKSCSVEIPAF
Sbjct: 579 DKLPIENVELKSCSVEIPAF 598

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: XP_022922171.1 (probable polygalacturonase [Cucurbita moschata])

HSP 1 Score: 407.5 bits (1046), Expect = 6.5e-110
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 282 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 341

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSA+PVIKNINYRDVVAENVNMSANLAG
Sbjct: 342 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSAMPVIKNINYRDVVAENVNMSANLAG 401

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 402 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAAKSGGCDFPE 461

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENVELKSCSVEIPAF
Sbjct: 462 DKLPIENVELKSCSVEIPAF 481

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: XP_022972957.1 (probable polygalacturonase [Cucurbita maxima])

HSP 1 Score: 403.7 bits (1036), Expect = 9.4e-109
Identity = 196/200 (98.00%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTE LVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 315 MPTEYLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 374

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 375 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 434

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 435 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAAKSGGCDFPE 494

Query: 181 DKLPIENVELKSCSVEIPAF 201
           DKLPIENV+LKSCSVEIPAF
Sbjct: 495 DKLPIENVQLKSCSVEIPAF 514

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: XP_023550020.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 402.9 bits (1034), Expect = 1.6e-108
Identity = 195/198 (98.48%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV
Sbjct: 281 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 340

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 341 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 400

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 401 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAAKSGGCDFPE 460

Query: 181 DKLPIENVELKSCSVEIP 199
           DKLPIENV+LKSCSVEIP
Sbjct: 461 DKLPIENVQLKSCSVEIP 478

[Close]

BLAST of CmoCh15G011340 vs. NCBI nr
Match: XP_023520463.1 (probable polygalacturonase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398.3 bits (1022), Expect = 4.0e-107
Identity = 193/199 (96.98%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENV AINTQSAVRIKTARGRGGFV
Sbjct: 281 MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVIAINTQSAVRIKTARGRGGFV 340

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG
Sbjct: 341 KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 400

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
           ISGDPFTDIC+SNVKIGLSKKPKKLQWNCT+VEGFSSDVDPPPCAPLAKA K+GGCDFPE
Sbjct: 401 ISGDPFTDICISNVKIGLSKKPKKLQWNCTEVEGFSSDVDPPPCAPLAKASKSGGCDFPE 460

Query: 181 DKLPIENVELKSCSVEIPA 200
           DKLPIENV+LKSCSVEIPA
Sbjct: 461 DKLPIENVQLKSCSVEIPA 479

[Close]

BLAST of CmoCh15G011340 vs. TAIR 10
Match: AT4G23500.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.7e-71
Identity = 130/197 (65.99%), Postives = 156/197 (79.19%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L+IRRLTCISPDSA IALGSEMSGGI +VR E++ AIN++S +RIKTA GRGG+V
Sbjct: 294 MPTKQLLIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAIGRGGYV 353

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KD++VR M + TMKYVFWMTG Y SH DD +DP ALPVI+NINY+D+VAENV M A LAG
Sbjct: 354 KDVYVRGMTMMTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQDMVAENVTMPAQLAG 413

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGG----C 180
           ISGD FT IC+SNV I LSKKPKK+ WNCTDV G++S V P PC  L +  K  G    C
Sbjct: 414 ISGDQFTGICISNVTITLSKKPKKVLWNCTDVSGYTSGVTPQPCQLLPE--KQPGTVVPC 473

Query: 181 DFPEDKLPIENVELKSC 194
           +FPED +PI+ V+L+ C
Sbjct: 474 NFPEDPIPIDEVKLQRC 488

[Close]

BLAST of CmoCh15G011340 vs. TAIR 10
Match: AT3G48950.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-70
Identity = 129/196 (65.82%), Postives = 152/196 (77.55%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L IRRLTCISP SAG+ALGSEMSGGI++VRIE+VT  NT+SA+RIKTA GRG +V
Sbjct: 272 MPTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYV 331

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDI+ RR+ + TMKYVFWM+G+Y SH D+ FDP ALP I NINYRD+ AENV MSA+L G
Sbjct: 332 KDIYARRITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTAENVTMSASLDG 391

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCA--PLAKA-VKNGGCD 180
           I  DPFT IC+SNV I L+ K KK+QWNCTDV G +S V P PC+  P  KA  KN  C 
Sbjct: 392 IDKDPFTGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPCSLLPEKKAQAKNVDCA 451

Query: 181 FPEDKLPIENVELKSC 194
           FP D +PIE+V LK C
Sbjct: 452 FPSDLIPIESVVLKKC 467

[Close]

BLAST of CmoCh15G011340 vs. TAIR 10
Match: AT2G23900.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 258.8 bits (660), Expect = 3.5e-69
Identity = 123/194 (63.40%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ L IRRLTCISPDSAGIALGSEMSGGI++VRIE++T + TQSA+RIKTA GRGG+V
Sbjct: 283 MPTQQLSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYV 342

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           KDIF RR  + TMKYVFWM+G Y  H    FDP A+PVI NINYRD+ A+NV   A L G
Sbjct: 343 KDIFARRFTMKTMKYVFWMSGAYNQHPASGFDPKAMPVITNINYRDMTADNVTQPARLDG 402

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPLAKAVKNGGCDFPE 180
              DPFT ICMSN+KI L+ +PKKL WNCT + G SS V P PC+ L +      C FP 
Sbjct: 403 FKNDPFTKICMSNIKIDLAAEPKKLLWNCTSISGVSSKVTPKPCSLLPEKGAPVDCAFPV 462

Query: 181 DKLPIENVELKSCS 195
           DK+PIE+V L  CS
Sbjct: 463 DKIPIESVVLNKCS 476

[Close]

BLAST of CmoCh15G011340 vs. TAIR 10
Match: AT3G61490.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-69
Identity = 128/205 (62.44%), Postives = 154/205 (75.12%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI +VR E++TA  T+S VRIKTA GRG FV
Sbjct: 271 MPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFV 330

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           K+I+V+ M L TMK+VFWMTG+YK+HAD  +DP ALP I  INYRD+VAENV+M+  L G
Sbjct: 331 KNIYVKGMNLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEG 390

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPL--------AKAVK 180
           ISGDPFT IC+SN  I ++ K KK  W C+DVEG +S VDP PC  L         K + 
Sbjct: 391 ISGDPFTGICISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLDGQESETTKKKMI 450

Query: 181 NGGCDFPEDKLPIENVELKSCSVEI 198
           +GGCDFP D L I+NVELK+CS ++
Sbjct: 451 DGGCDFPTDVLEIDNVELKTCSYQM 475

[Close]

BLAST of CmoCh15G011340 vs. TAIR 10
Match: AT3G61490.2 (Pectin lyase-like superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 7.8e-69
Identity = 128/205 (62.44%), Postives = 154/205 (75.12%), Query Frame = 0


Query: 1   MPTEDLVIRRLTCISPDSAGIALGSEMSGGIRNVRIENVTAINTQSAVRIKTARGRGGFV 60
           MPT+ LVIRRLTCISP SA IALGSEMSGGI +VR E++TA  T+S VRIKTA GRG FV
Sbjct: 271 MPTKHLVIRRLTCISPYSAAIALGSEMSGGIEDVRAEDITAYQTESGVRIKTAVGRGAFV 330

Query: 61  KDIFVRRMFLSTMKYVFWMTGDYKSHADDKFDPSALPVIKNINYRDVVAENVNMSANLAG 120
           K+I+V+ M L TMK+VFWMTG+YK+HAD  +DP ALP I  INYRD+VAENV+M+  L G
Sbjct: 331 KNIYVKGMNLHTMKWVFWMTGNYKAHADSHYDPHALPEITGINYRDIVAENVSMAGRLEG 390

Query: 121 ISGDPFTDICMSNVKIGLSKKPKKLQWNCTDVEGFSSDVDPPPCAPL--------AKAVK 180
           ISGDPFT IC+SN  I ++ K KK  W C+DVEG +S VDP PC  L         K + 
Sbjct: 391 ISGDPFTGICISNATISMAAKHKKAIWMCSDVEGVTSGVDPKPCDLLDGQESETTKKKMI 450

Query: 181 NGGCDFPEDKLPIENVELKSCSVEI 198
           +GGCDFP D L I+NVELK+CS ++
Sbjct: 451 DGGCDFPTDVLEIDNVELKTCSYQM 475

The following BLAST results are available for this feature:

BLAST of CmoCh15G011340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7PZL3	1.6e-66	62.31	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 ...	[more]
P27644	8.3e-07	31.09	Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1	[more]

BLAST of CmoCh15G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E7Y4	1.7e-111	100.00	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430234 PE=3 SV...	[more]
A0A6J1E3E2	3.2e-110	98.50	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430236 PE=3 SV...	[more]
A0A6J1I677	4.6e-109	98.00	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471479 PE=3 SV=1	[more]
A0A6J1IBV8	1.2e-104	92.50	probable polygalacturonase OS=Cucurbita maxima OX=3661 GN=LOC111471546 PE=3 SV=1	[more]
A0A6J1E7Z5	1.5e-104	93.00	probable polygalacturonase OS=Cucurbita moschata OX=3662 GN=LOC111430246 PE=3 SV...	[more]

BLAST of CmoCh15G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922170.1	3.5e-111	100.00	probable polygalacturonase [Cucurbita moschata]	[more]
XP_022922171.1	6.5e-110	98.50	probable polygalacturonase [Cucurbita moschata]	[more]
XP_022972957.1	9.4e-109	98.00	probable polygalacturonase [Cucurbita maxima]	[more]
XP_023550020.1	1.6e-108	98.48	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]
XP_023520463.1	4.0e-107	96.98	probable polygalacturonase [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh15G011340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23500.1	1.7e-71	65.99	Pectin lyase-like superfamily protein	[more]
AT3G48950.1	5.4e-70	65.82	Pectin lyase-like superfamily protein	[more]
AT2G23900.1	3.5e-69	63.40	Pectin lyase-like superfamily protein	[more]
AT3G61490.1	7.8e-69	62.44	Pectin lyase-like superfamily protein	[more]
AT3G61490.2	7.8e-69	62.44	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 19..153 e-value: 5.5E-12 score: 45.4
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..159 e-value: 3.9E-34 score: 120.2
None	No IPR available	PANTHER	PTHR31339	PECTIN LYASE-RELATED	coord: 1..194
None	No IPR available	PANTHER	PTHR31339:SF12	ENDO-POLYGALACTURONASE-LIKE PROTEIN	coord: 1..194
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 3..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G011340.1	CmoCh15G011340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity