CmoCh15G011260 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G011260
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 7818377 .. 7818628 (-)
RNA-Seq ExpressionCmoCh15G011260
SyntenyCmoCh15G011260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTGAAGCTTTCATGGCCTCTCAGATTGAACCTCCTAATGATCCACTTAAATTCATAACCCACTTCTTCCATTTCGCTACCTCCAATTTCTCTACCCTTTTAGCTCAACTCATCGTGACCTCCACTCCTCCAAATCCGCCGCTGTCAACGCTTTGTCGTCTCCGGCCGAGTTTACCTCCGGTTTTCCATCCACACTCAGGATTTCAGGGCTCAATTCGGATGGAAAACCTGGCGGCCCCGCATTTGTAG

mRNA sequence

ATTTGTGAAGCTTTCATGGCCTCTCAGATTGAACCTCCTAATGATCCACTTAAATTCATAACCCACTTCTTCCATTTCGCTACCTCCAATTTCTCTACCCTTTTAGCTCAACTCATCGTGACCTCCACTCCTCCAAATCCGCCGCTGTCAACGCTTTGTCGTCTCCGGCCGAGTTTACCTCCGGTTTTCCATCCACACTCAGGATTTCAGGGCTCAATTCGGATGGAAAACCTGGCGGCCCCGCATTTGTAG

Coding sequence (CDS)

ATGGCCTCTCAGATTGAACCTCCTAATGATCCACTTAAATTCATAACCCACTTCTTCCATTTCGCTACCTCCAATTTCTCTACCCTTTTAGCTCAACTCATCGTGACCTCCACTCCTCCAAATCCGCCGCTGTCAACGCTTTGTCGTCTCCGGCCGAGTTTACCTCCGGTTTTCCATCCACACTCAGGATTTCAGGGCTCAATTCGGATGGAAAACCTGGCGGCCCCGCATTTGTAG

Protein sequence

MASQIEPPNDPLKFITHFFHFATSNFSTLLAQLIVTSTPPNPPLSTLCRLRPSLPPVFHPHSGFQGSIRMENLAAPHL
Homology
[Close]
BLAST of CmoCh15G011260 vs. ExPASy TrEMBL
Match: A0A6J1DXS3 (uncharacterized protein LOC111024477 OS=Momordica charantia OX=3673 GN=LOC111024477 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.6e-04
Identity = 37/78 (47.44%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 1  MASQIEPPND-----PLKFITHFFHFATSNFSTLLAQLIVTSTPP---NPPLSTLC---R 60
          MA QIEPPND     P++ ITHFFH ATSN  +L A     S PP    P  S LC    
Sbjct: 1  MAFQIEPPNDRHEQLPIQSITHFFHSATSNICSLFAN--PQSIPPFSLQPSSSRLCIPVA 60

Query: 61 LRPSLPPVFHPHSGFQGS 68
             S  P F PHSGF+ +
Sbjct: 61 FPASRKPQFVPHSGFESA 76

[Close]
BLAST of CmoCh15G011260 vs. NCBI nr
Match: XP_038874545.1 (uncharacterized protein LOC120067161 isoform X1 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 40/78 (51.28%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 1  MASQIEPPND-----PLKFITHFFHFATSNFSTLLAQLIVTSTPP---NPPLSTLC---R 60
          MA QIEPPN+     PLKFITHFFH +TSNFSTL A     S PP    P  S LC    
Sbjct: 1  MAFQIEPPNEPHEQNPLKFITHFFHSSTSNFSTLFAN--PQSIPPFSLQPSSSRLCIPVA 60

Query: 61 LRPSLPPVFHPHSGFQGS 68
             S  P F  HSGF  +
Sbjct: 61 SPASRKPPFLSHSGFHST 76

[Close]
BLAST of CmoCh15G011260 vs. NCBI nr
Match: XP_038874546.1 (uncharacterized protein LOC120067161 isoform X2 [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 40/78 (51.28%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 1  MASQIEPPND-----PLKFITHFFHFATSNFSTLLAQLIVTSTPP---NPPLSTLC---R 60
          MA QIEPPN+     PLKFITHFFH +TSNFSTL A     S PP    P  S LC    
Sbjct: 1  MAFQIEPPNEPHEQNPLKFITHFFHSSTSNFSTLFAN--PQSIPPFSLQPSSSRLCIPVA 60

Query: 61 LRPSLPPVFHPHSGFQGS 68
             S  P F  HSGF  +
Sbjct: 61 SPASRKPPFLSHSGFHST 76

[Close]
BLAST of CmoCh15G011260 vs. NCBI nr
Match: XP_022157864.1 (uncharacterized protein LOC111024477 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 5.5e-04
Identity = 37/78 (47.44%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 1  MASQIEPPND-----PLKFITHFFHFATSNFSTLLAQLIVTSTPP---NPPLSTLC---R 60
          MA QIEPPND     P++ ITHFFH ATSN  +L A     S PP    P  S LC    
Sbjct: 1  MAFQIEPPNDRHEQLPIQSITHFFHSATSNICSLFAN--PQSIPPFSLQPSSSRLCIPVA 60

Query: 61 LRPSLPPVFHPHSGFQGS 68
             S  P F PHSGF+ +
Sbjct: 61 FPASRKPQFVPHSGFESA 76

The following BLAST results are available for this feature:
BLAST of CmoCh15G011260 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G011260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXS32.6e-0447.44uncharacterized protein LOC111024477 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of CmoCh15G011260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038874545.13.8e-0551.28uncharacterized protein LOC120067161 isoform X1 [Benincasa hispida][more]
XP_038874546.13.8e-0551.28uncharacterized protein LOC120067161 isoform X2 [Benincasa hispida][more]
XP_022157864.15.5e-0447.44uncharacterized protein LOC111024477 [Momordica charantia][more]
BLAST of CmoCh15G011260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G011260.1CmoCh15G011260.1mRNA