CmoCh15G010310 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G010310
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 27
LocationCmo_Chr15: 6245198 .. 6245485 (-)
RNA-Seq ExpressionCmoCh15G010310
SyntenyCmoCh15G010310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTAGTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

mRNA sequence

ATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTAGTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

Coding sequence (CDS)

ATGAGCGGCGGAGGCGCCACTCCACCTCGACGGCGGCGGCGTTTTCTCTCTTCTTTCTTCCTAGTGATTTTCTTCATCTGGGTCGTCTTCTGCCACCACCGTCACCAAGCCACCGCCGTCGCCAGACCGTTCCCTGGAAATCAAAAGCCAGAGCAAAGCGTTAGCGGTGGCGCCGGAAGCAAAGAGAAGCTGCTCCGGACGTATTTCAATGGAAGGAGTTTCGGTTCGAGAGGGTTTCAAGAGAAGAAACGAACAGTCCCCAGCTGCCCTGATCCTCTCCATAACTAG

Protein sequence

MSGGGATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Homology
BLAST of CmoCh15G010310 vs. ExPASy Swiss-Prot
Match: Q9LUA1 (CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.3e-04
Identity = 27/90 (30.00%), Postives = 41/90 (45.56%), Query Frame = 0

Query: 12 RRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNG 71
          R    ++  +VI   +++     +      R FP      ++ + G   +E L++ YF  
Sbjct: 8  RSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFP------ETPASGKRQEEDLMKKYFGA 67

Query: 72 ------RSFGSRGFQEKKRTVPSCPDPLHN 96
                 SF  +G  E KR VPSCPDPLHN
Sbjct: 68 GKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

BLAST of CmoCh15G010310 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.7e-18
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MSGGGATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60
          M   GAT P RRRR LS FF+++FFIWVV       A+A+ARP   ++ P+    G  GS
Sbjct: 1  MYDSGAT-PSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPDM---GAVGS 60

Query: 61 KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 96
          KEK    YFNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 61 KEK----YFNGRSLGSREFEENKRTVPSCPDPLHN 85

BLAST of CmoCh15G010310 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 26 IWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG----S 85
          IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG    +
Sbjct: 16 IWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFNRTA 75

Query: 86 RGFQEKKRTVPSCPDPLHN 96
           GF+E KR VPSCPDPLHN
Sbjct: 76 NGFEESKRRVPSCPDPLHN 92

BLAST of CmoCh15G010310 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 0

Query: 17  SSFFLVIFFIWV----VFCHHRHQATAVARPFPGNQKP---EQSVSGGA--GSKEKLLRT 76
           S+F ++I  +WV    V CH + +A+ +  P P    P   ++S+SG     +K  LL+ 
Sbjct: 16  SAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSLSGEEKDNAKNDLLQK 75

Query: 77  YFNGRSFG----SRGFQEKKRTVPSCPDPLHN 96
           YFNGR+F       GF++ KR +PSCPDPLHN
Sbjct: 76  YFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

BLAST of CmoCh15G010310 vs. ExPASy TrEMBL
Match: A0A2N9G6I6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0

Query: 23 IFFIWVVFCHHRHQATAVARPFPGNQK----PEQSVSGGAGSKEKLLRTYFNGRSFG--- 82
          +F IW+  C +  QA A+ R FPGN       E+S+     SKE+L   YF+GR+F    
Sbjct: 13 VFQIWLC-CEYSCQARAI-RIFPGNGVAKFIKEKSIDKKI-SKEELFHKYFSGRTFSLNN 72

Query: 83 ---SRGFQEKKRTVPSCPDPLHN 96
               GF E KR VPSCPDPLHN
Sbjct: 73 KTDDNGFDESKRRVPSCPDPLHN 92

BLAST of CmoCh15G010310 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 0

Query: 21 LVIFFIWV-VFCHHRHQATAVARPFPGNQKPEQSVSGGA---GSKEKLLRTYFNGRSFG- 80
          L+IFF+ + V C  R       R  PGN   + + S G      K  L + YFNGRSF  
Sbjct: 20 LIIFFLQIWVCCDCR---AGAIRILPGNGMRKMTESQGMKDNKGKGDLFQKYFNGRSFSF 79

Query: 81 ---SRGFQEKKRTVPSCPDPLHN 96
              RGF+E KR VPSCPDPLHN
Sbjct: 80 NKTDRGFEESKRRVPSCPDPLHN 99

BLAST of CmoCh15G010310 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202.2 bits (513), Expect = 2.0e-48
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1   MSGGGATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60
           MSGGGATPPRRRRRFLSSFFL+IFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS
Sbjct: 7   MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 66

Query: 61  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 96
           KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 67  KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

BLAST of CmoCh15G010310 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.0e-48
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MSGGGATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60
          MSGGGATPPRRRRRFLSSFFL+IFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS
Sbjct: 1  MSGGGATPPRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60

Query: 61 KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 96
          KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN
Sbjct: 61 KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

BLAST of CmoCh15G010310 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 0

Query: 5  GATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQS-VSGGAGSKEK 64
          G   P R+RRFLS+  ++  FIWVVFCH        AR FP N  PE++ V GG GSKEK
Sbjct: 3  GGVTPTRQRRFLSTLLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSKEK 62

Query: 65 LLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 96
          LLR YFN    G RGF++ KRTVPSCPDPLHN
Sbjct: 63 LLRKYFN----GMRGFEDNKRTVPSCPDPLHN 88

BLAST of CmoCh15G010310 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 55/95 (57.89%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MSGGGATPPRRRRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS 60
          M   GAT P RRRR LS FF+++FFIWVV       A+A+ARP   ++ P+    G  GS
Sbjct: 1  MYDSGAT-PSRRRRLLSYFFIILFFIWVVV--GNQAASAMARPLEESENPDM---GAVGS 60

Query: 61 KEKLLRTYFNGRSFGSRGFQEKKRTVPSCPDPLHN 96
          KEK    YFNGRS GSR F+E KRTVPSCPDPLHN
Sbjct: 61 KEK----YFNGRSLGSREFEENKRTVPSCPDPLHN 85

BLAST of CmoCh15G010310 vs. NCBI nr
Match: KAB1221059.1 (CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra])

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-09
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 26 IWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGS-----KEKLLRTYFNGRSFG----S 85
          IWV  C +  QA A+ R  PGN + + +  G  GS     KE+LLR YFNGR+FG    +
Sbjct: 16 IWVC-CEYSCQAGAI-RIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGFNRTA 75

Query: 86 RGFQEKKRTVPSCPDPLHN 96
           GF+E KR VPSCPDPLHN
Sbjct: 76 NGFEESKRRVPSCPDPLHN 92

BLAST of CmoCh15G010310 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 45.1 bits (105), Expect = 3.8e-05
Identity = 27/90 (30.00%), Postives = 41/90 (45.56%), Query Frame = 0

Query: 12 RRRFLSSFFLVIFFIWVVFCHHRHQATAVARPFPGNQKPEQSVSGGAGSKEKLLRTYFNG 71
          R    ++  +VI   +++     +      R FP      ++ + G   +E L++ YF  
Sbjct: 8  RSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFP------ETPASGKRQEEDLMKKYFGA 67

Query: 72 ------RSFGSRGFQEKKRTVPSCPDPLHN 96
                 SF  +G  E KR VPSCPDPLHN
Sbjct: 68 GKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LUA15.3e-0430.00CLAVATA3/ESR (CLE)-related protein 27 OS=Arabidopsis thaliana OX=3702 GN=CLE27 P... [more]
Match NameE-valueIdentityDescription
A0A5A7VDX36.7e-1857.89Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A6A1W7053.3e-0951.90CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01... [more]
A0A0A0KR664.1e-0740.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1[more]
A0A2N9G6I67.7e-0645.78Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22693 PE=4 SV=1[more]
A0A061E6F81.0e-0545.78Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ... [more]
Match NameE-valueIdentityDescription
KAG6579278.12.0e-4898.95CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7016789.12.0e-4898.95hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601785.14.3e-1958.70CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so... [more]
KAA0063931.11.4e-1757.89putative Clavata3/esr-related 43 [Cucumis melo var. makuwa][more]
KAB1221059.16.9e-0951.90CLAVATA3/ESR (CLE)-related protein 43 [Morella rubra][more]
Match NameE-valueIdentityDescription
AT3G25905.13.8e-0530.00CLAVATA3/ESR-RELATED 27 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..95
IPR040274CLAVATA3/ESR (CLE)-related protein 27/43PANTHERPTHR37184CLAVATA3/ESR (CLE)-RELATED PROTEIN 27coord: 9..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G010310.1CmoCh15G010310.1mRNA