CmoCh15G008800 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G008800
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationCmo_Chr15: 4450537 .. 4451167 (-)
RNA-Seq ExpressionCmoCh15G008800
SyntenyCmoCh15G008800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAAGTGAGCTTGGACTGGCCAGCTCATCAACCTCTTCTCCAATTTGTCCAAACTTCCACAGTGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

mRNA sequence

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Coding sequence (CDS)

ATGTCGGCGGTGTTGACCAAGAGTAGCTTGGGCAATGTTTATAAATTCTACGACGCCCGCAAAGACTCGATCATAAACCATTTGAGATATTCAGAGATTTCCTTTCTCTGGTTCTCAATGGGATCAACACCACAGCATGTTTCCATCGACATGAATCAATTCTGTCCCATCCAGGGAGCCTCAGATGGCTTACCACCTACCACCGCCATGCCCAGGCCGCCTCCGCCACCCGACAGCTCTCAGACTCGCAACAATCTTGGAAAGATAGTTTTCGGGCTTACTTTCCAGGCAGTTTTGGCTCTGTTCATCAGCCCACCCACCTCATGTCCTCCACTTTTGATGCATATCTTTGCGGCGGCTATGTTGATCAGCTTTGCACTTTCACTTGCTGCGCTTTTCCTTCAAATTGCATACCCAAGAATTGCGCTTTCCTCCGGCAAGATCGGTGCTCTGCTAGCTGCCATTGGTGCGTGCACCATTACTAGTGTTCTTCTTAAGCATCAGCATTTCAGTTGGATTCCTTGGCTGGCATGCGGCTTCGCCTTGATGGCCTTCATTCTATCATTCAAGTGA

Protein sequence

MSAVLTKSSLGNVYKFYDARKDSIINHLRYSEISFLWFSMGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK
Homology
BLAST of CmoCh15G008800 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 5.6e-32
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CmoCh15G008800 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 62  DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 121
           + LP    M R P P +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19  NSLPICITMQR-PSPANSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78

Query: 122 LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 181
           LISFA+S A +FLQ  +PRIAL   KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79  LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138

Query: 182 LMAFILSFK 191
           LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145

BLAST of CmoCh15G008800 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 83/167 (49.70%), Postives = 103/167 (61.68%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQFC----PIQGASDGL----PPTTAMP-------RPPPPPDSSQTRN 99
           M ST    S+DM+ F      I   + GL     P+  +P        P    DSSQ   
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQ--- 60

Query: 100 NLGKIVFGLTFQAVLALFI-SPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIAL 159
            LGKI+  L+FQAVLALFI SPPTS PPLL+H FAAA+ ISFA+S AALFL  ++PR A 
Sbjct: 61  KLGKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAH 120

Query: 160 SSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
              K+GAL +A G C I S LL HQ+F+WI W+AC F+++ F LSFK
Sbjct: 121 LFEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of CmoCh15G008800 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 72/170 (42.35%), Postives = 89/170 (52.35%), Query Frame = 0

Query: 40  MGSTPQH-VSIDMNQF----------------CPIQG-ASDGLPPTTAMPRPPPPPDSSQ 99
           M  TP H +S+DMN+                 C   G ASD LP    M R P P +S Q
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQR-PSPVNSPQ 60

Query: 100 TRNNLGKIVFGLTFQAVLALFIS-PPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPR 159
                G     LTFQA++ LF+S  P+S  PL   +FAA ML SF  S   + LQ  +P+
Sbjct: 61  ----FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 160 IALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
            A      GAL AAIG C I S+LL + +F+WI WLA G  L AFI+SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

BLAST of CmoCh15G008800 vs. ExPASy TrEMBL
Match: A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-13
Identity = 59/124 (47.58%), Postives = 70/124 (56.45%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQFCPIQGA--------------------SDGLPPTTAMPRPPPPPDS 99
           M STPQ  S+DMN       A                    SD LP    M RPPP    
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPP---- 60

Query: 100 SQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYP 144
           +++  +LGK + GLTFQAVLALFIS P+S P L   +F AA+LISFA+S A LFLQ AYP
Sbjct: 61  AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120

BLAST of CmoCh15G008800 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 99
           MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 60

Query: 100 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 159
           ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT
Sbjct: 61  ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 120

Query: 160 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           ITSVLLKHQHFSWIPWLACGFALMAFILSFK
Sbjct: 121 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 151

BLAST of CmoCh15G008800 vs. NCBI nr
Match: KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-51
Identity = 118/151 (78.15%), Postives = 127/151 (84.11%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 99
           MGSTPQHVSIDMNQF  IQGASDGL       R P      Q RNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSIDMNQFSSIQGASDGL------HREP------QARNNLGKIVFGLTFQAVL 60

Query: 100 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 159
           ALFIS PTS PPLL+++FAAAMLIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC 
Sbjct: 61  ALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120

Query: 160 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           + S+LLKHQ+FSWIPWLACGFALMAFILSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFALMAFILSFK 139

BLAST of CmoCh15G008800 vs. NCBI nr
Match: KAG6579139.1 (hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.9 bits (520), Expect = 6.1e-49
Identity = 112/151 (74.17%), Postives = 124/151 (82.12%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQFCPIQGASDGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVL 99
           MGSTPQHVSI+MNQF   QGASDGL       R P      Q RNNLGKIVFGLTFQAVL
Sbjct: 1   MGSTPQHVSINMNQFSSTQGASDGL------HREP------QARNNLGKIVFGLTFQAVL 60

Query: 100 ALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACT 159
           ALFIS PTS PPL +++FAAA+LIS ALSLAALFLQ A+PRIALS GKIGA+LAA+GAC 
Sbjct: 61  ALFISRPTSFPPLFINLFAAALLISLALSLAALFLQTAFPRIALSFGKIGAMLAAVGACI 120

Query: 160 ITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           + S+LLKHQ+FSWIPWLACGFA MAF+LSFK
Sbjct: 121 MASLLLKHQNFSWIPWLACGFAFMAFVLSFK 139

BLAST of CmoCh15G008800 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-31
Identity = 84/157 (53.50%), Postives = 110/157 (70.06%), Query Frame = 0

Query: 40  MGSTPQHVSIDMNQ-FCPIQGASDGLPPTTAMP-----RPPPPPDSSQTRNNLGKIVFGL 99
           M S+ Q +SIDMN  +  I   ++  P    +P     +   P +SS+T NN+G  + GL
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGL 60

Query: 100 TFQAVLALFISPPTSCPPLLMHIFAAAMLISFALSLAALFLQIAYPRIALSSGKIGALLA 159
           TFQAVLALFI+  TS PPLL H+F AA+LISFA+S   +FLQ  +PRIAL   KIGAL+A
Sbjct: 61  TFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIA 120

Query: 160 AIGACTITSVLLKHQHFSWIPWLACGFALMAFILSFK 191
           AIG C + S+L+ HQ+F+WI WLACGF+LMAF+LSF+
Sbjct: 121 AIGVCILASLLI-HQNFAWISWLACGFSLMAFLLSFR 156

BLAST of CmoCh15G008800 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.6e-31
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 0

Query: 62  DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 121
           + LP    M R P P +SS+T NN+GK + GLTFQAVLALFI+ P S PPLL H+FAAA+
Sbjct: 19  NSLPICITMQR-PSPANSSKTENNVGKTILGLTFQAVLALFITSPNSSPPLLTHLFAAAV 78

Query: 122 LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 181
           LISFA+S A +FLQ  +PRIAL   KIGAL+AAIG C + S+L+ HQ+F+WI WLA GF+
Sbjct: 79  LISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVASLLI-HQNFAWISWLASGFS 138

Query: 182 LMAFILSFK 191
           LMAF+LSF+
Sbjct: 139 LMAFVLSFR 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJN85.6e-3253.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A5A7U7U11.2e-3162.02Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJP21.3e-2549.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A0A0KQ034.0e-1442.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
A0A6J1CY582.6e-1347.58uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
KAG6579137.11.2e-76100.00hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579136.11.3e-5178.15hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579139.16.1e-4974.17hypothetical protein SDJN03_23587, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49803.11.2e-3153.50hypothetical protein Csa_004681 [Cucumis sativus][more]
KAA0050246.12.6e-3162.02putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G008800.1CmoCh15G008800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane