CmoCh15G008740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G008740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr15: 4434225 .. 4434575 (-)
RNA-Seq Expression	CmoCh15G008740
Synteny	CmoCh15G008740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTTTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATCCATTCTCGGCAAAGCTCGCTAG

mRNA sequence

ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTTTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATCCATTCTCGGCAAAGCTCGCTAG

Coding sequence (CDS)

ATGAGATTATCAGACCAATTTGCAGTGACCAAACTCTCCACTTTCACACCTCCAACAGTAATCTTACAATCAATTTTGTTTTTGTCTTGGAACAGTCTCACAATCCTTGTGTTATTTGCAGGCAGTGCAGCGGGGAATGTGATCTTCCATGATCTTCCCTCCTCTACCATTGATGCCTTTGTTATCTCAATTTTCTTTGCCTTTTCAGGTGCTTTGAGTGCTCTTTTGGTCCCTCAAAGGCACAACTTAGCTACATTTTGTGCCTTGTATTCTCTGGCTTCCATGGCTTCTGCTCTGCTTCTGCTGATTTGGGGATTGTATCACTCATCCATTCTCGGCAAAGCTCGCTAG

Protein sequence

MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSSILGKAR

Homology

[Close]

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL
Match: A0A0A0KLQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MRLSDQFAVTKLST-FTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDA 60
           M+LS+Q A+ KL T FT PT+IL+SILFLS NSLTIL+LFAGSA G VIFH  PSS IDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSSILGKAR 117
           F+ISI FAFSGALSALLVPQRH LA FCALYSLAS+ASALLLLIWGLYH+ ILGKA+
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGKAQ 128

[Close]

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL
Match: A0A5A7U2V8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00460 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 41  GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALL 100
           GSA G V+FH L SS IDAFVISI FAFSGALSALLVPQRHNLA FCA+YSL SMASALL
Sbjct: 4   GSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALL 63

Query: 101 LLIWGLYHSSILGKA 116
           LLIWGLYH+ ILGKA
Sbjct: 64  LLIWGLYHTLILGKA 78

[Close]

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL
Match: A0A0A0KN11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 19  TVILQSILFLSWNSLTILVLFAGSA---AGNVIFHDL--PSSTIDAFVISIFFAFSGALS 78
           T +L SILF+S+N+LTIL+  +  +      VIF+ L  PS   DAFV+SI F+FS AL 
Sbjct: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75

Query: 79  ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 109
           ALL+P +  LA + A YS+A MA AL LLI GLY+
Sbjct: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

[Close]

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL
Match: A0A061E956 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.1e-09
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 12  LSTFTPPTVILQSILFLSWNSLTILVLF-----AGSAAGNVIFHDLPSSTIDAFVISIFF 71
           LS+    T IL+SILF+S+   TIL+L       GS    ++F   P +T  AF I I F
Sbjct: 26  LSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHP-ATFHAFTICIIF 85

Query: 72  AFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGL 107
           AFSGA  AL+ P    +A+ C  YS+ASMASA+ LLIW +
Sbjct: 86  AFSGAFCALMTPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.5e-07
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 20  VILQSILFLSWNSLTILVLFA-----GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSA 79
           +IL+SILF S+ +  IL+        G+    +IF  LPS+   AF+I I FAFSGA   
Sbjct: 40  IILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSA-FHAFLICIIFAFSGAYCG 99

Query: 80  L-LVPQRHNLATFCALYSLASMASALLLLIW 105
           L ++P +  LATFC   S+ASMASA+ LLIW
Sbjct: 100 LMMIPHKPRLATFCGYCSMASMASAVALLIW 129

[Close]

BLAST of CmoCh15G008740 vs. NCBI nr
Match: KAG6579131.1 (hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 213.8 bits (543), Expect = 8.0e-52
Identity = 114/116 (98.28%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF 60
           MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF
Sbjct: 1   MRLSDQFAVTKLSTFTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDAF 60

Query: 61  VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSSILGKAR 117
           VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHS +LGKAR
Sbjct: 61  VISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSFVLGKAR 116

[Close]

BLAST of CmoCh15G008740 vs. NCBI nr
Match: KGN49809.1 (hypothetical protein Csa_004648 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-37
Identity = 92/117 (78.63%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MRLSDQFAVTKLST-FTPPTVILQSILFLSWNSLTILVLFAGSAAGNVIFHDLPSSTIDA 60
           M+LS+Q A+ KL T FT PT+IL+SILFLS NSLTIL+LFAGSA G VIFH  PSS IDA
Sbjct: 12  MKLSNQIAMAKLPTSFTLPTIILKSILFLSLNSLTILLLFAGSAVGTVIFHGFPSSAIDA 71

Query: 61  FVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSSILGKAR 117
           F+ISI FAFSGALSALLVPQRH LA FCALYSLAS+ASALLLLIWGLYH+ ILGKA+
Sbjct: 72  FIISIVFAFSGALSALLVPQRHKLARFCALYSLASLASALLLLIWGLYHTLILGKAQ 128

[Close]

BLAST of CmoCh15G008740 vs. NCBI nr
Match: KAA0050243.1 (hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ98163.1 hypothetical protein E5676_scaffold180G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-23
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 41  GSAAGNVIFHDLPSSTIDAFVISIFFAFSGALSALLVPQRHNLATFCALYSLASMASALL 100
           GSA G V+FH L SS IDAFVISI FAFSGALSALLVPQRHNLA FCA+YSL SMASALL
Sbjct: 4   GSAVGTVMFHGLSSSAIDAFVISIVFAFSGALSALLVPQRHNLAKFCAVYSLVSMASALL 63

Query: 101 LLIWGLYHSSILGKA 116
           LLIWGLYH+ ILGKA
Sbjct: 64  LLIWGLYHTLILGKA 78

[Close]

BLAST of CmoCh15G008740 vs. NCBI nr
Match: KAG6601931.1 (hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-18
Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 13  STFTPP-TVILQSILFLSWNSLTILVLFAGSAAG---NVIFHDL--PSSTIDAFVISIFF 72
           + F PP T++L+ IL+LS N+L+IL++ +G + G    +IF  L  PSS  DAFV+SI F
Sbjct: 10  NAFVPPLTILLKPILYLSLNTLSILLILSGRSEGGGVGLIFDGLSNPSSAFDAFVLSITF 69

Query: 73  AFSGALSALLVPQRHNLATFCALYSLASMASALLLLIWGLYHSSILGK 115
           AF GAL ALL+P + NLATF  LYS+ASMASALLLLIWGLY+S + G+
Sbjct: 70  AFLGALGALLIPHKPNLATFYTLYSVASMASALLLLIWGLYYSFVHGR 117

[Close]

BLAST of CmoCh15G008740 vs. NCBI nr
Match: KGN49807.1 (hypothetical protein Csa_004664 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 4.9e-09
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 19  TVILQSILFLSWNSLTILVLFAGSA---AGNVIFHDL--PSSTIDAFVISIFFAFSGALS 78
           T +L SILF+S+N+LTIL+  +  +      VIF+ L  PS   DAFV+SI F+FS AL 
Sbjct: 16  TTLLNSILFVSFNTLTILMFLSARSKDLRSLVIFNALSYPSFAFDAFVLSITFSFSTALG 75

Query: 79  ALLVPQRHNLATFCALYSLASMASALLLLIWGLYH 109
           ALL+P +  LA + A YS+A MA AL LLI GLY+
Sbjct: 76  ALLIPNKPILAIYYAFYSVAFMAFALFLLILGLYY 110

The following BLAST results are available for this feature:

BLAST of CmoCh15G008740 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G008740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ9	1.2e-37	78.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137420 PE=4 SV=1	[more]
A0A5A7U2V8	1.7e-23	84.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KN11	2.4e-09	51.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137400 PE=4 SV=1	[more]
A0A061E956	9.1e-09	46.00	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_011399 PE=4 SV=1	[more]
A0A5B7B2W8	6.5e-07	47.25	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285...	[more]

BLAST of CmoCh15G008740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579131.1	8.0e-52	98.28	hypothetical protein SDJN03_23579, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49809.1	2.5e-37	78.63	hypothetical protein Csa_004648 [Cucumis sativus]	[more]
KAA0050243.1	3.5e-23	84.00	hypothetical protein E6C27_scaffold355G00870 [Cucumis melo var. makuwa] >TYJ9816...	[more]
KAG6601931.1	2.0e-18	57.41	hypothetical protein SDJN03_07164, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49807.1	4.9e-09	51.58	hypothetical protein Csa_004664 [Cucumis sativus]	[more]

BLAST of CmoCh15G008740 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008740.1	CmoCh15G008740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane