CmoCh15G008100 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G008100
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase II subunit RPB7
Location	Cmo_Chr15: 4014936 .. 4020107 (+)
RNA-Seq Expression	CmoCh15G008100
Synteny	CmoCh15G008100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGGTAAAATCTCCCAGTAGCACAGGAAGTTACTCGGAGAAAGTGTCCTAGGAAAGCTGACTATATGTTATGAATGTCTTAACTATTGAGTTACGTTTATATTGGTAATGTTCCAAAGAACATTTGGTTCTAGCATTGTCACTCGGTTGATAATCTTTTGTGATTTAGAGAAATAAGGGAATCTTTTATGTAAGTTTACTCATTTGGAGTCGGGATGGAATAGAATTTCGAATCACTTCCCAATATTTTGTTTTTTGGTTTTATACCAAGATGATGTGATTAGATATATTATCTTTTTTAATCAATAATTTTTAAAAATTTATATATATACACACAATTTATATATATTTTGTACCTACCAACATTAATATTGTAAAAAAACTACACGAAATTTTGAAAGAAGCTACATCTAACGTAATCGTCTTGTAAAATGGATTAGGAGGGTTCCTTCTCGTATAAAATTTCAAACTAATCTTTAAGGTGGCTTTGCTCTTCAATAGCCTCTCACTTTGTATATGAAAGCGTCTCGTACTATCTCTTTTCAAGTTAATGAGAGGTAGTTTTGAAAGAACCCGAACATAGTGTTGTCGTTATTATCATAAAACAATTGTGTGCATTTCTTATCACAAAATATAAAACTAAATGTTAAAGATTCCTTCATTTTTAATAGTTACTCCCAAATAGTCACAATTTCTGTTATTACAACTAAAAGAGGGATGAGACAACTTTAAAATAATAAAATAATTAAATAGCCAAAAAGTTAAGTATTATTCATCTATTTTTATTTGCATTGTTTAGATTTCAATTAAATTAAACAATTTTTTTAAAAAAATGGATATTGTTCCATATCACTTGATTTCATACATATAAGGTAAATATTTTAAAATAAGTCAACGTTGTAATAGAAAAATAAAATAAAATATTAATTATTTTTTAATAATATTTTCGTAAAATAAAAAGAACACTCTAGCTCCCCACCGACCCCACCCATTCATTACACTCTCACTCCCACTCACCTAGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACGTCTTTCTTCACAGCAACTCAAATTAGCATTTGTGTAACGAAAGAAACAGGGAGTTGTTTGCTTAACAGAACAATCTCAGCTTATCAATGACTGTAGATTATAATCGGGTTTTAATGTTCATTGGTTCTGGTTCACTGTCTCATACCCATATCATCGATTCAGCATTTTCTTCTCTCTCTTTTTTCTTGCTCTATCACAAATGGAGTCCACAAAACCCTCTTCTGCAATTGTGGAAGAACATAGATTCTTGCTTCTTCCACTTGTTCTTGTTCTTGTTCTTCTTTATCGCACTCTTAATTTCTTTAAATGGGGTTTCCTTCAGGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGGTTTGTTAACTTCACCCCCACCGCTTGTATCCTGCTACAACATTGCTGTTGATCTTGTTTTCTTTTTGTTAAATTTACCTTTTCGATAAGACCCTGAATGAGATCTCATGAAACCTTCTTTATAAGGGTGTGGAAACCCCTCCCTAGCAAACGCATTTTGAAAACCTTAGGGGAAGTCCTAAGAGGACAATATCTGCTAGCAGTTGGGTCGGGTCGGGTCGTTTCACTTTGCTTCACAACTAAGTATCCTAAAAGCATTCATGATTTGAACTAGTTTAGCTGGGCAAGATGGTTGTGTAGTTTCTTGTAGGAAAACCTCCCTGGTAAGTCTTAATTTGTGAGATCCCACGTCGGTTGGAGGGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAACCTCTTCCTAGCAGACGCGTTTTAAAAACCTTGGGGGGAAACCCGTAAGGGAAAGCTCAAATAAGACAATATCTGCTGGCGGTGGGCTTGGGTTGTTACAAATGATGTCAGAGCCAGACACCGGATGGTGTGCTAGTGAGGACATTGGGACCCTAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGAGGAATGGAGTATCCCTTACAAGGGTGTGGAGGTTACTTCTACCTAGCATACGCGTTTTAAAACCTTGAGGGAAAGCCTAGAAGGAAAGCCCAAAGAGGACAATATTTGCTAGCGGTGGAGTTGGATTGTTACAAATGGTATAAGAGCCCGACACTGGGCGGTATGCCAGCGAGGTTGCCGGGTCCTGAAGGGGGGTAGATTGTGAGATTTCACATCAATTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAACAGACGTGTTTTAAAAACCTTGAGGGGAAGCTCGGAAGAGAAACCTCAAAAAAGACAATATCTACTAGCGGTGGGTTTGGGCTGTTGCAAATGGTATCAGAGCCAGACACTAGACAATGTGCCAGCGAGGACGCTAGGCCCCTAAGGGGGTGGATTGTGAGATCCCACATCGGTTGGAAAGGGGAACGAAACATCCCTTGTAAGGGGTGTAGAAACCTCTCCGTAGCAGATGCGTTTTAAAACCTCGAGGGAAAGCCTAGAAGGAAAAGCCCAAAGAGGACAATATCTGCTAGTTGTGGGCTTGGACTGTTACAACATGTCAGTTCATGAGCGGACAAAAGCCAATAAAAATGGTAAAACTATTTGTTGGATGATATTATTCTTTTAAAAGGTTTGATACTTCTTTCAACTAGTGAACAATTAGATGGATTATGTTATCGAAAAGTTTTGTACTTCGACAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGGTATCTATCTGGCACCATGGCACCCTTTTTTGATATCTAGCATGTGATTAATGAAGTTCTTTTGAATAGTAAATATGAATATGACTGCCATTGCAACTATTGTAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATGTAAGTATATGTTTATAATCCATTTTCATATATATGCGAGCGGTGGGTTTTGGCGGTTACAAATGGTATCAGAGCCAGACACTGGATGATGTTGTGCCAACGAGGAGGCTGAGCCCCGAAGGGGGGTGGACAAGAGGCGGTGTGCCAACAAGGACGTTGGGCCTTGAAGAGGGTAGATTGGGGGGTCCCACATCCATTAGAGAAGGGAACAAGTGTCCGCGAGGATGCTGGGCCCCGAAGGGGGTGGATTGTGAGATCTTACATTGGTTGGAGAGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACCTCTTCCTAGTAGAGGCGTTTAGAAACCTTGAGGGGTAGCTCGAAAGGGGAAACCCAAAGAGGACAATATATGCTAGCGGTGGGCTTTGGCGGTTACAAATGGTATCAAAGCCAGACATCGGAAGATGTTGTGCTAGCGAGGAGGTTGAAACTCGAAAGGGGGTGGACATGAGGCGGTGTGCCAAAAAGGACGCTGGGCTCTGAAGATGGTAGATTGGGAGGTCCCACATCTATTAGAGAAGGGAACAAGTGCCAGCGAGGATGCTGGGCTCCGAAGGGGGTGGATTGTGAGATCCCACATCGATTGGGGAGAAAGGGGGTGGATTGTGAGATCTTACATCGATTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTAGAAATCTCTTTCTAGCAGACGCATTTTAGAAACCTTGAGGTAGCTCGAAAGGGAAAGCCCAAAGAGAACAATATATGCTGACGGTGGGCTTTGGCGGTTACAAATGGTATCAGAGCCAGACACCGGACGATGTGCCAGCGAGGAGGTTGAGCCTCGAAGCGGGGTGAACATGAGGTGGTGTGCCAACAAGGACACTGGACCCCGAAGGGGGTAGGTTAGGGGGTCCCACATCCATTAGAGATGGGAACAAGTGCCAGCGAGGACATTGGGCCTCGAAGGGGGTGGATTGTGAGATCCCACATCGATTGGGGAGGTAGAAGGTAGATTGTGAGATCTCATATTGGTTGGGAAGGAGAACGAAACATTCACTATTAGGGTGTAGAAACCTCTTCCTAGCAGACACGTTTTAAAAACCTTGACGGGAAGCCTGAAAGGGAAACCCCTTTTGTTACGATGTGAACAGTGCAAAGTGTATTTTTTGGAGAGAGATTCCGAAATTCATTAGGAATGTCGTCACTGACTTCAGTTCTCGTGTTCGTTGTGCAGTGAAGTATTTAAGCAAGCTAACACTAACACTAACACTAACGCTTTTTCTCATCACGTGTTTCAGTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTATATCTCTATTTGACATGCATTCTCTAACATAACGCTCTCTTGTCGTGTTTTTACTGATTTATTTCTGCTCTCGTGTAGGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCGTAACGTCTTTTCTCTATTTAACATCGTTAAAGATAACTCTATGTTTGTTGGTTCTTGTGAGTTTGGCGTCTCATTTAACTATTGCTTTTGCTTGCAGTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAGAACATGTGTTAGTTTACTAATTTTACTGTATAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATTAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGGTCCAAGTCCAC

mRNA sequence

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAGAACATGTGTTAGTTTACTAATTTTACTGTATAGTTTCTGCATTTCCTTGACTGTTCTCTGTCGAATTAAACGGATTCGTTTGCCCGTTACTTGGTGTAGCAATATTTGGAATGAGAAACGTATTTATAACGGTCCAAGTCCAC

Coding sequence (CDS)

ATGTCTTTGCCACCTAAACATTGCTTTTCAAAGACCCAGATTCTTATCTTGGAGATCGCTGAGTACTTGTGTCACAGAGAGCTTGAGAAGGTATCTTTCTTAGGCATGGAAATGGAACCAAGGCTGACTTCTTCTTCCTCTCCGTGCTTGACGCTGTTGTCGGCCCGCCGCCTCTCCCCGTTCAGTGCCACCGCCGCCTCTCTCCCACTTTGTCCCGCCGCCGCCGCCTCCCTACCAGTACAGGGAGCCACTATGTTCTTCCACATAGTTTTGGAGAGGAACATGCAGCTGCATCCACGGCACTTTGGCCGTAATCTCCGTGAAAATCTGGTGTCCAAACTCATGAAAGATGTTGAGGGTACTTGCAGTGGTCGACATGGTTTCGTAGTAGCAATTACGGGAATTGAGAACATCGGTAAAGGATTGATTAGCGATGGGACAGGTTTCGTCACTTTTCCCGTTAAATACCAATGCGTCGTGTTTCGACCATTCAAGGGAGAAATCTTAGAAGCAATTGTTACTATGGTAAACAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCCGGAGATATGCCAAACTATACCACTTCGGATGGATCAGTTAAGATTCAGAAGGACAGTGAAGTTCGATTAAAGATAATCGGGACTCGAGTCGATGCAACTGAAATCTTTTGTATTGGAACCATTAAAGATGACTTCTTGGGTGTCATAAATGACCCTGCGGCAGCTTAG

Protein sequence

MSLPPKHCFSKTQILILEIAEYLCHRELEKVSFLGMEMEPRLTSSSSPCLTLLSARRLSPFSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA

Homology

[Close]

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot
Match: P46279 (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.1e-95
Identity = 169/174 (97.13%), Postives = 173/174 (99.43%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIENIGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 259
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174

[Close]

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot
Match: P38421 (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.3e-92
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot
Match: Q5E9B8 (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-53
Identity = 93/172 (54.07%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot
Match: Q7ZW41 (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-53
Identity = 94/172 (54.65%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot
Match: P62487 (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 7.6e-53
Identity = 93/172 (54.07%), Postives = 129/172 (75.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+HI LE  + LHPR+FG NL   +  KL  +VEGTC+G++GFV+A+T I+NIG G+I 
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
            G GFV +PVKY+ +VFRPFKGE+++A+VT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 205 -SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIN 256
            + + P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG+++
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL
Match: A0A6J1FGH6 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.6e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 80  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 139
           VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG
Sbjct: 68  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 127

Query: 140 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 199
           KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD
Sbjct: 128 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 187

Query: 200 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 259
           DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA
Sbjct: 188 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 247

Query: 260 A 261
           A
Sbjct: 248 A 248

[Close]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL
Match: A0A6J1FFB3 (DNA-directed RNA polymerase II subunit RPB7 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111445199 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 9.8e-96
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL
Match: A0A2I4HHD1 (DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC109017848 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.4e-95
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIEN+GKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENVGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL
Match: A0A6J1JWX8 (DNA-directed RNA polymerase II subunit RPB7 OS=Cucurbita maxima OX=3661 GN=LOC111489078 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 8.3e-95
Identity = 173/176 (98.30%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVL+RNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 1   MFFHIVLQRNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176

[Close]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL
Match: A0A2P2JY16 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.4e-94
Identity = 174/178 (97.75%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 83  ATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGL 142
           A MFFHIVLERNMQLHPR+FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGL
Sbjct: 10  AIMFFHIVLERNMQLHPRYFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGL 69

Query: 143 ISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDME 202
           I DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPDDME
Sbjct: 70  IRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDME 129

Query: 203 FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 130 FQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 187

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: KAG6579070.1 (hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 516.9 bits (1330), Expect = 9.9e-143
Identity = 260/260 (100.00%), Postives = 260/260 (100.00%), Query Frame = 0


Query: 1   MSLPPKHCFSKTQILILEIAEYLCHRELEKVSFLGMEMEPRLTSSSSPCLTLLSARRLSP 60
           MSLPPKHCFSKTQILILEIAEYLCHRELEKVSFLGMEMEPRLTSSSSPCLTLLSARRLSP
Sbjct: 1   MSLPPKHCFSKTQILILEIAEYLCHRELEKVSFLGMEMEPRLTSSSSPCLTLLSARRLSP 60

Query: 61  FSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEG 120
           FSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEG
Sbjct: 61  FSATAASLPLCPAAAASLPVQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEG 120

Query: 121 TCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMG 180
           TCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMG
Sbjct: 121 TCSGRHGFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMG 180

Query: 181 FFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI 240
           FFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI
Sbjct: 181 FFAEAGPVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEI 240

Query: 241 FCIGTIKDDFLGVINDPAAA 261
           FCIGTIKDDFLGVINDPAAA
Sbjct: 241 FCIGTIKDDFLGVINDPAAA 260

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: XP_022939214.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata])

HSP 1 Score: 369.0 bits (946), Expect = 3.3e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 80  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 139
           VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG
Sbjct: 68  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 127

Query: 140 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 199
           KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD
Sbjct: 128 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 187

Query: 200 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 259
           DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA
Sbjct: 188 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 247

Query: 260 A 261
           A
Sbjct: 248 A 248

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: KAG7032688.1 (hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.5 bits (929), Expect = 3.1e-96
Identity = 176/181 (97.24%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 80  VQGATMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIG 139
           V+GATMFFHIVLERNMQLHPRHFGRNLRENLV+KLMKDVEGTCSGRHGFVVAITGIENIG
Sbjct: 1   VKGATMFFHIVLERNMQLHPRHFGRNLRENLVTKLMKDVEGTCSGRHGFVVAITGIENIG 60

Query: 140 KGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPD 199
           KGLI DGTGFVTFPVKYQCVVFRPFKGEILEA+VTMVNKMGFFAEAGPVQIFVSNHLIPD
Sbjct: 61  KGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPD 120

Query: 200 DMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 259
           DMEFQSGD+PNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA
Sbjct: 121 DMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAA 180

Query: 260 A 261
           A
Sbjct: 181 A 181

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: XP_022939221.1 (DNA-directed RNA polymerase II subunit RPB7 isoform X3 [Cucurbita moschata])

HSP 1 Score: 359.8 bits (922), Expect = 2.0e-95
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. NCBI nr
Match: XP_023551087.1 (DNA-directed RNA polymerase II subunit RPB7 [Cucurbita pepo subsp. pepo] >XP_023551088.1 DNA-directed RNA polymerase II subunit RPB7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.2 bits (918), Expect = 5.9e-95
Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPRHFGRNLR+NLVSKLMKDVEGTCSGRHGF+VAITGIENIGKGLIS
Sbjct: 1   MFFHIVLERNMQLHPRHFGRNLRDNLVSKLMKDVEGTCSGRHGFIVAITGIENIGKGLIS 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. TAIR 10
Match: AT5G59180.1 (DNA-directed RNA polymerase II )

HSP 1 Score: 338.6 bits (867), Expect = 4.5e-93
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MFFHIVLERNMQLHPR FGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+ IGKGLI 
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 204
           DGTGFVTFPVKYQCVVFRPFKGEILEA+VT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 205 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPAAA 261
           +GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of CmoCh15G008100 vs. TAIR 10
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 0


Query: 127 GFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 186
           G+++  T +ENIG+G I + TG + FPV +  + F+ FKGEI+  +V  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 187 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGT--RVDATEIFCIG 246
           P +I   +H+     EF  G+ P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 247 TIKDDFLG 253
           +I  D LG
Sbjct: 166 SIDGDNLG 172

[Close]

BLAST of CmoCh15G008100 vs. TAIR 10
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain )

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-13
Identity = 41/132 (31.06%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 127 GFVVAITGIENIGKGLISDGTGFVTFPVKYQCVVFRPFKGEILEAIVTMVNKMGFFAEAG 186
           G+ VA+T ++ IG+G I + TG V FPV +  + F+ FKGEI+  +V  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 187 PVQIFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR--VDATEIFCIG 246
           P++    ++    D ++  G+ P +     S +IQ ++ VR+ +IG +      E   + 
Sbjct: 107 PIENVYLSYTKMPDYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQALA 166

Query: 247 TIKDDFLGVIND 257
           +++ D+LG +++
Sbjct: 167 SLEGDYLGPLSE 177

[Close]

BLAST of CmoCh15G008100 vs. TAIR 10
Match: AT1G06790.2 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEA 172
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

[Close]

BLAST of CmoCh15G008100 vs. TAIR 10
Match: AT1G06790.1 (RNA polymerase Rpb7 N-terminal domain-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 26/87 (29.89%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 85  MFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIS 144
           MF+   LE ++++ P      L + + S L            G  V+I  I+++  G + 
Sbjct: 1   MFYLSELEHSLRVPPHLLNLPLEDAIKSVLQNVFLDKVLADLGLCVSIYDIKSVEGGFVL 60

Query: 145 DGTGFVTFPVKYQCVVFRPFKGEILEA 172
            G G  T+ V  + VVFRPF GE++ A
Sbjct: 61  PGDGAATYKVGLRIVVFRPFVGEVIAA 87

The following BLAST results are available for this feature:

BLAST of CmoCh15G008100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46279	2.1e-95	97.13	DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P38421	6.3e-92	92.61	DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q5E9B8	7.6e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus OX=9913 GN=POLR2G PE=1...	[more]
Q7ZW41	7.6e-53	54.65	DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio OX=7955 GN=polr2g PE=...	[more]
P62487	7.6e-53	54.07	DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens OX=9606 GN=POLR2G PE...	[more]

BLAST of CmoCh15G008100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGH6	1.6e-98	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Cucurbita moschata OX=...	[more]
A0A6J1FFB3	9.8e-96	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X3 OS=Cucurbita moschata OX=...	[more]
A0A2I4HHD1	6.4e-95	98.30	DNA-directed RNA polymerase II subunit RPB7 OS=Juglans regia OX=51240 GN=LOC1090...	[more]
A0A6J1JWX8	8.3e-95	98.30	DNA-directed RNA polymerase II subunit RPB7 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A2P2JY16	1.4e-94	97.75	DNA-directed RNA polymerase II subunit RPB7 isoform X1 OS=Rhizophora mucronata O...	[more]

BLAST of CmoCh15G008100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579070.1	9.9e-143	100.00	hypothetical protein SDJN03_23518, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939214.1	3.3e-98	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X1 [Cucurbita moschata]	[more]
KAG7032688.1	3.1e-96	97.24	hypothetical protein SDJN02_06738, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022939221.1	2.0e-95	100.00	DNA-directed RNA polymerase II subunit RPB7 isoform X3 [Cucurbita moschata]	[more]
XP_023551087.1	5.9e-95	98.86	DNA-directed RNA polymerase II subunit RPB7 [Cucurbita pepo subsp. pepo] >XP_023...	[more]

BLAST of CmoCh15G008100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59180.1	4.5e-93	92.61	DNA-directed RNA polymerase II	[more]
AT3G22900.1	7.1e-14	33.59	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT4G14660.1	1.6e-13	31.06	RNA polymerase Rpb7-like, N-terminal domain	[more]
AT1G06790.2	1.3e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]
AT1G06790.1	1.3e-04	29.89	RNA polymerase Rpb7 N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005576	RNA polymerase Rpb7-like , N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 92..148 e-value: 3.5E-12 score: 46.4
None	No IPR available	GENE3D	2.40.50.140		coord: 165..255 e-value: 2.1E-36 score: 125.8
None	No IPR available	PANTHER	PTHR12709:SF8	BNAA10G12180D PROTEIN	coord: 74..260
None	No IPR available	CDD	cd04462	S1_RNAPII_Rpb7	coord: 165..252 e-value: 3.77373E-48 score: 152.415
None	No IPR available	CDD	cd04329	RNAP_II_Rpb7_N	coord: 86..165 e-value: 3.05999E-40 score: 131.921
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 84..164 e-value: 1.0E-27 score: 98.3
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	SUPERFAMILY	88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 85..162
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 162..240 e-value: 3.6E-16 score: 59.2
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 74..260
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 163..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G008100.1	CmoCh15G008100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic
biological_process	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
biological_process	GO:0045948	positive regulation of translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0000932	P-body
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0003676	nucleic acid binding