CmoCh15G007870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G007870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pre-mRNA-splicing factor 38
Location	Cmo_Chr15: 3864741 .. 3868338 (+)
RNA-Seq Expression	CmoCh15G007870
Synteny	CmoCh15G007870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGGGTTCTTAAATATAATACTATTTATGATAAGTTTTGGTATGAAATTAGAAAACCCAGATCTCTATTGCTGCCTTCATCTAATAAAGGAACACAAGCTTACAATTCTAAAGCAAGAAATTGACCTTGTGCTAAATTTTTCTTTTTATTGATGAGAGGCCGTGCTTTCATCTAGGGAAAATGAGAGAACAAAAAGGATATACAAAAAGACAGCCCAACAAGAGAAGTTAGATCTGAATATACAAAACCGGCTTCCAGTTAATTGAGATAAAAATTTAATAGGAAAAGTCTTGAAACAGTCAAGATGTAATAATTTATCCAACTCTTCCAGTCTTTTATCTATCTGATCCTCTATACATATTTTCTTGCATTTTTTTTTTTAATTGGATGAGTTGTGAAAATTTGATCTAAAATTTGTCTCCTTTTTTTCAACTCAAAGGTTACCCCAGTTTAGATTACTTTCTTCTGTTTTATGATTCATTCATCCTTCCCACTTGAATCTCTCTTGTGAAAAAACAATTAAAGCCTAGACTTCCATCATGCATCCTATATCCAAGGGGCTTTTTGAATTTGGCCAATAGTGGGCTAAGAGGTGGCTTGTGGTTGAAAGATTTGATGGCATAGGCATACGACTTGGGAGTGAGTCACCTGTGGAGGCAAATTCTTAATGACTTAAGTTGATGAAATTGGACATGGGAATATTGTAGAGGAAGTAGAAGGCTTTTTCTGCTTTAAAATTTTCATTGCTACTCGTAGTATGGGGAACCTAATAATTTAAACAAGAAAGTGATTGAAGGAAGGCTTTGTTGGCTGCTGACTTTGGAAGGATGCCTAGCTCTTTTTGCCAGCTGCACCACTTGAAGGATTTTCATATCAGTTGAATGTCACTTGTGGAAATGAGTAAATGCTCTTTTCTAGGTGTCTTTTTTTTGTTGGGTCCTTCTTTTGATTCTTTTTGTAAGCATAGATCATGTATAGTTCTCATATGCTATCGATGAGAGTGACTGTATTCTTTTTGTCCCTGTAGGTAGATGTCTAGTTATTGACCCATAAATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTTTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACGGCATTCTGCCTCCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTGCTAAAGCACGAGGATTCCCCTTACATCAGAGCGGTAGGTAGAATCCTTTTGACCTTTAATTATCATATTTATAATAAAGACGTAAAACATTGGTAACTTTTATGTCGTGGGCTGTTTTGTGTACTCCTTTTGTGGATTCCATTCTACTTATTCATATTTTAGTAAATAATTATTTTGATCTTCTTTAATTAAGAAAACAAAGAGCTAGTATTTATACTCGTGCACACCCAACCAACAAAGTTTCTGTAGGTAATTTGAGTAATTTGCTGCCAAAAGCAGTAACTCAGTCTGTAAAACGCATGCAATAAGTCAGAATGTTTGCTTAGTTTTTAATTTCTACTTGAACAATTTCAATTTTTCTATGAAAAGAAAAAGTTCCTCTTTTAGGCTTGTAATCATGCTGAAGTCAGGTTCTCTTTCTCATTCAAATACACCATTTTATTGGCCTTCAATTAGAATCACAGGTCTCCTTTCTCCCTCTCTCTCTCAAACTTATTATTCTGAGTTGATGAAGCTTGTGCTTTTATTTGGATTGAAATTTAGGACTTGATATTAGAAAGCCTTTTTTGAAATCTCCTCTGATGTTTGACTTTTGCCTTTATGCTAGTTCCTGCATTATTCTGTTTCTTTAGTTTATAAAACTGCCTGAAACATGCATATGCTCGATAACATTCTTGCCTGCTCATTGGATGTCATGAACAAACGACGAGCATTGTCACTTTGGTTGCTGTGTCCTTTCTCACGTTATAAATTAATAGTGCCTTTGCTTTGCTTTGCTTTGCTTTGCAGATATCCAAGGTTTGAGGTGACCTTTTTTATTTTTTTAAAATATCAAGATTATTTTAATCCTTTGAGTTTATTTAACTGTAAATTGATATATGATGAGTACACAAAGTATTTTGTATGGATATTGCCGCCTCTTTTTATTTTACACTCTTAATAAGGTCTGCATACATCAGAGGAATTAATATGGTTACTTAAATTCTTGCATGCCTCTTTTTCTGCATGATTTGCTTTCTTATCTTATTATTATGATGCCCTTATTGGTCTGATGTTTAAGAAGTTATGGTTCTAGCTGTATTATTTACACTCGGTTCTGTTACCATTTGATGTATTTCTTAAATTAATTTTCCAGATTGGATTTCTGTACTTGAGATACGTTGCAGATCCAAAGACTCTCTGGAATTGGGTTGAACCGTATGTTAAAGATGAAGAGGTATGTGATACATAAGGTGCTTGCTTGATTTCTTAATTTTGTGGATTGTTGCTAAAGTATAACGGTTAGCATGCATGTGGTTGGCTTATAATTTCCTTCAATGCAACTGTAACTTGTTTTCTTCTGCCGTCAATATATGTTGATAATTGAATAAGCGCTGACCAATTTTCAATATTATTGAGATGCCATATATGCTTGTGGAGATGAATTTGAACTTGAGGCTGTTTGTACTTTCTAATCTAGTGATTAATCTGTGTTCTTTCAGTTGACTTTATACTGCAACCCTCCCTTTTGGAGGGCACTTATTTGACCCCTTCCTTTTGGAGAGGGGACACCTTGCTCCTTTGTCTGTTAGGCTGTCTTGGCTGGGTTAGTGCTGTTTGAATGAAGTTTAACCTTTTCTTATCTGGAAATTTTTTTCTTTTTAGTACAAGTCTAAAAAAGGTGGTTTGGGGTTCATCATGCATGAAGAATGTATTTCCGCGTTTCTTCTTTGGCTGAAATTTATTTGTGGCATTTATTTTGTCGGTTACGAATTGCTTTGCTTGATAAGTGCAATAAACGGCCAACCGCTGAAGATACTTGCCTTCTCTTGGTGGATGAGAAGTCTTTTATGGGGTTTTCATTTTTGTTGCTGCATAATGCTTAATCAGCCACCAGTTGGTCTTTTGTTTGGAAACCCAAAGTCCTCATTACTGGTGGCCTTTATTATTCCCGGTAATTTTTGACCTTGTATGTCAAGATCATTAATGAGTAATACTGCTGTCCTCTTTAATTATCATATAATTAATTATCTTAATAGTTCAATGATCCCTTCAATTTGATTAATTTTGTCTAGACTTCGAAGGGTTTTCCTCTTTATTGAGGAAAGAGATGGGGTATCTTTAATAGTAAGTGGAATCCAATTTTTTTGAAGTTCTTTATCGGATTTGAGCTTCAACTGAAAGCAAGTTCTTATGTGATTGCTCTCCTGTCAGATCTTTATATGAAGTCAGTGTTTATCTTCTTGAATTATATTTTGTCCGCAGAGTTCAATGGTGCTGTGCTGTTGATAAAGAAAGCTTATGCCTAG

mRNA sequence

ATTTGGGTTCTTAAATATAATACTATTTATGATAAGTTTTGGTATGAAATTAGAAAACCCAGATCTCTATTGCTGCCTTCATCTAATAAAGGAACACAAGCTTACAATTCTAAAGCAAGAAATTGACCTTGTGCTAAATTTTTCTTTTTATTGATGAGAGGCCGTGCTTTCATCTAGGGAAAATGAGAGAACAAAAAGGATATACAAAAAGACAGCCCAACAAGAGAAGTTAGATCTGAATATACAAAACCGGCTTCCAGTTAATTGAGATAAAAATTTAATAGGAAAAGTCTTGAAACAGTCAAGATGTAATAATTTATCCAACTCTTCCAGTCTTTTATCTATCTGATCCTCTATACATATTTTCTTGCATTTTTTTTTTTAATTGGATGAGTTGTGAAAATTTGATCTAAAATTTGTCTCCTTTTTTTCAACTCAAAGGTTACCCCAGTTTAGATTACTTTCTTCTGTTTTATGATTCATTCATCCTTCCCACTTGAATCTCTCTTGTGAAAAAACAATTAAAGCCTAGACTTCCATCATGCATCCTATATCCAAGGGGCTTTTTGAATTTGGCCAATAGTGGGCTAAGAGGTGGCTTGTGGTTGAAAGATTTGATGGCATAGGCATACGACTTGGGAGTGAGTCACCTGTGGAGGCAAATTCTTAATGACTTAAGTTGATGAAATTGGACATGGGAATATTGTAGAGGAAGTAGAAGGCTTTTTCTGCTTTAAAATTTTCATTGCTACTCGTAGTATGGGGAACCTAATAATTTAAACAAGAAAGTGATTGAAGGAAGGCTTTGTTGGCTGCTGACTTTGGAAGGATGCCTAGCTCTTTTTGCCAGCTGCACCACTTGAAGGATTTTCATATCAGTTGAATGTCACTTGTGGAAATGAGTAGATGTCTAGTTATTGACCCATAAATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTTTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACGGCATTCTGCCTCCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTGCTAAAGCACGAGGATTCCCCTTACATCAGAGCGATTGGATTTCTGTACTTGAGATACGTTGCAGATCCAAAGACTCTCTGGAATTGGGTTGAACCGTATGTTAAAGATGAAGAGCCACCAGTTGGTCTTTTGTTTGGAAACCCAAAGTCCTCATTACTGGTGGCCTTTATTATTCCCGAGTTCAATGGTGCTGTGCTGTTGATAAAGAAAGCTTATGCCTAG

Coding sequence (CDS)

ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTTTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATACCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCATGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACGGCATTCTGCCTCCTGTACAAGTTTTTCACCATGAAACTTACTGTGAAGCAAATGCATGGGCTGCTAAAGCACGAGGATTCCCCTTACATCAGAGCGATTGGATTTCTGTACTTGAGATACGTTGCAGATCCAAAGACTCTCTGGAATTGGGTTGAACCGTATGTTAAAGATGAAGAGCCACCAGTTGGTCTTTTGTTTGGAAACCCAAAGTCCTCATTACTGGTGGCCTTTATTATTCCCGAGTTCAATGGTGCTGTGCTGTTGATAAAGAAAGCTTATGCCTAG

Protein sequence

MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVKDEEPPVGLLFGNPKSSLLVAFIIPEFNGAVLLIKKAYA

Homology

[Close]

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot
Match: Q8RWB1 (Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-58
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EE 124
           +E
Sbjct: 123 DE 124

[Close]

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot
Match: Q5VTL8 (Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-33
Identity = 72/129 (55.81%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW 124
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY   P  LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

[Close]

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot
Match: Q80SY5 (Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-33
Identity = 72/129 (55.81%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 59  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 118

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW 124
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY   P  LW+W
Sbjct: 119 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 178

[Close]

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot
Match: Q6AXY7 (Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-33
Identity = 72/129 (55.81%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G  
Sbjct: 58  LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR 117

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW 124
                   STAFCLLYK FT+KLT KQ+ GL+ H DSPYIRA+GF+Y+RY   P  LW+W
Sbjct: 118 GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW 177

[Close]

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot
Match: Q6P7Y3 (Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.5e-30
Identity = 68/129 (52.71%), Postives = 84/129 (65.12%), Query Frame = 0


Query: 14  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG-- 73
           L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G  
Sbjct: 36  LNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVR 95

Query: 74  -------PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW 124
                   STAFCLLYK FT+KLT KQ+ GL+ H DSP IRA+GF+Y+RY   P  L +W
Sbjct: 96  GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSDSPDIRALGFMYIRYTQPPPDLVDW 155

[Close]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL
Match: A0A6J1JTS5 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL
Match: A0A6J1FF63 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL
Match: A0A540MTN9 (ABC transporter domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_012270 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.1e-68
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           ME++TCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEVQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+GFLYLRY ADPKTLWNWVEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGFLYLRYAADPKTLWNWVEPYIK 120

Query: 121 DEEPPVGLLFGNPKSSL 138
           D+E  + +L    KSSL
Sbjct: 121 DDEGLINILSNFLKSSL 137

[Close]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL
Match: A0A6J1CK04 (Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 9.0e-68
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL
Match: A0A1S3CIJ0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.0e-67
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW EPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWFEPYVK 120

Query: 121 DEE 124
           D+E
Sbjct: 121 DDE 123

[Close]

BLAST of CmoCh15G007870 vs. NCBI nr
Match: XP_023550341.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. NCBI nr
Match: XP_022993767.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita maxima])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. NCBI nr
Match: XP_022938827.1 (pre-mRNA splicing factor SR-like 1 [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. NCBI nr
Match: KAG7016573.1 (Pre-mRNA splicing factor SR-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.9e-68
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120

Query: 121 DEE 124
           DEE
Sbjct: 121 DEE 123

[Close]

BLAST of CmoCh15G007870 vs. NCBI nr
Match: TQE02142.1 (hypothetical protein C1H46_012270 [Malus baccata])

HSP 1 Score: 267.7 bits (683), Expect = 6.4e-68
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCR 60
           ME++TCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEV+DEIYNQVDHVEPWMTGNCR
Sbjct: 1   MEVQTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR 60

Query: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVK 120
           GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+GFLYLRY ADPKTLWNWVEPY+K
Sbjct: 61  GPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVGFLYLRYAADPKTLWNWVEPYIK 120

Query: 121 DEEPPVGLLFGNPKSSL 138
           D+E  + +L    KSSL
Sbjct: 121 DDEGLINILSNFLKSSL 137

[Close]

BLAST of CmoCh15G007870 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-59
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EE 124
           +E
Sbjct: 123 DE 124

[Close]

BLAST of CmoCh15G007870 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-59
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 2   EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
           EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3   EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62  PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNWVEPYVKD 121
           PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W EPY+KD
Sbjct: 63  PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKD 122

Query: 122 EE 124
           +E
Sbjct: 123 DE 124

[Close]

BLAST of CmoCh15G007870 vs. TAIR 10
Match: AT5G37370.3 (PRP38 family protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-44
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 2  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRG 61
          EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRG
Sbjct: 3  EIQSNGRAYESLLEKVLSMNILSSDYFKELYGLKTYHEVIDEIYNQVNHVEPWMGGNCRG 62

Query: 62 PSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAI 98
          PSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRAI
Sbjct: 63 PSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAI 98

[Close]

BLAST of CmoCh15G007870 vs. TAIR 10
Match: AT5G37370.4 (PRP38 family protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 55  MTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFLYLRYVADPKTLWNW 114
           M GNCRGPSTA+CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+GFLYLRYVAD KTLW W
Sbjct: 1   MGGNCRGPSTAYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTW 60

Query: 115 VEPYVKDEE 124
            EPY+KD+E
Sbjct: 61  YEPYIKDDE 69

The following BLAST results are available for this feature:

BLAST of CmoCh15G007870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB1	2.1e-58	83.61	Pre-mRNA splicing factor SR-like 1 OS=Arabidopsis thaliana OX=3702 GN=SRL1 PE=1 ...	[more]
Q5VTL8	6.9e-33	55.81	Pre-mRNA-splicing factor 38B OS=Homo sapiens OX=9606 GN=PRPF38B PE=1 SV=1	[more]
Q80SY5	6.9e-33	55.81	Pre-mRNA-splicing factor 38B OS=Mus musculus OX=10090 GN=Prpf38b PE=1 SV=1	[more]
Q6AXY7	6.9e-33	55.81	Pre-mRNA-splicing factor 38B OS=Rattus norvegicus OX=10116 GN=Prpf38b PE=1 SV=1	[more]
Q6P7Y3	5.5e-30	52.71	Pre-mRNA-splicing factor 38B OS=Danio rerio OX=7955 GN=prpf38b PE=2 SV=1	[more]

BLAST of CmoCh15G007870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTS5	2.4e-68	100.00	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111489677 PE=3 SV=...	[more]
A0A6J1FF63	2.4e-68	100.00	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111444923 PE=3 S...	[more]
A0A540MTN9	3.1e-68	88.32	ABC transporter domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_01...	[more]
A0A6J1CK04	9.0e-68	99.19	Pre-mRNA-splicing factor 38 OS=Momordica charantia OX=3673 GN=LOC111011867 PE=3 ...	[more]
A0A1S3CIJ0	2.0e-67	98.37	Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103501359 PE=3 SV=1	[more]

BLAST of CmoCh15G007870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550341.1	4.9e-68	100.00	pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022993767.1	4.9e-68	100.00	pre-mRNA splicing factor SR-like 1 [Cucurbita maxima]	[more]
XP_022938827.1	4.9e-68	100.00	pre-mRNA splicing factor SR-like 1 [Cucurbita moschata]	[more]
KAG7016573.1	4.9e-68	100.00	Pre-mRNA splicing factor SR-like 1, partial [Cucurbita argyrosperma subsp. argyr...	[more]
TQE02142.1	6.4e-68	88.32	hypothetical protein C1H46_012270 [Malus baccata]	[more]

BLAST of CmoCh15G007870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G37370.1	1.5e-59	83.61	PRP38 family protein	[more]
AT5G37370.2	1.5e-59	83.61	PRP38 family protein	[more]
AT5G37370.3	1.4e-44	85.42	PRP38 family protein	[more]
AT5G37370.4	1.9e-33	86.96	PRP38 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 12..123 e-value: 1.4E-42 score: 145.6
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..123
None	No IPR available	PANTHER	PTHR23142:SF3	PRP38 FAMILY PROTEIN	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G007870.1	CmoCh15G007870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0035435	phosphate ion transmembrane transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0071011	precatalytic spliceosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005315	inorganic phosphate transmembrane transporter activity