CmoCh15G006820 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G006820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontwo-component response regulator ORR9-like isoform X1
LocationCmo_Chr15: 3337861 .. 3338359 (-)
RNA-Seq ExpressionCmoCh15G006820
SyntenyCmoCh15G006820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGGTAAGAAATCCAATCCATAGCTAAATTCACATACTTTCTTTTTTAAAACCATTTTATAATACAATCCAATGCCCAGCAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGGTATCTGGGCCTGCTTGATGACCTTGACAACTTTTCTTCTCCATTTTCTCCCCCACGTCTCTCCCAACAACAGGTCATTTTAATTAATTTTTTTTTCTATTATAGCCTTTAA

mRNA sequence

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA

Coding sequence (CDS)

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA

Protein sequence

MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKALSL
Homology
[Close]
BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FIN1 (two-component response regulator ORR9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 45  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 10  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 67

[Close]
BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FDT6 (two-component response regulator ORR9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.0e-16
Identity = 70/102 (68.63%), Postives = 70/102 (68.63%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEEEVQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEEVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 70

[Close]
BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1FDU5 (two-component response regulator ORR9-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111444632 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 64/102 (62.75%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDVEEEEEEEEEE                                      QQQ
Sbjct: 1   MELMKAGDVEEEEEEEEEE--------------------------------------QQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 64

[Close]
BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match: A0A6J1JYN5 (two-component response regulator ORR9-like OS=Cucurbita maxima OX=3661 GN=LOC111489481 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 63/102 (61.76%), Postives = 64/102 (62.75%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDVEEEEEEEEE EEE                                     +
Sbjct: 1   MELMKAGDVEEEEEEEEEGEEE------------------------------------VK 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 66

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_022938352.1 (two-component response regulator ORR9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 70/102 (68.63%), Postives = 70/102 (68.63%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEEEVQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEEVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 70

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_022938353.1 (two-component response regulator ORR9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-16
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0 

Query: 45  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL
Sbjct: 10  EEEEEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 67

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550891.1 (two-component response regulator ARR8-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550892.1 (two-component response regulator ARR9-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: XP_023550893.1 (two-component response regulator ARR9-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 68/102 (66.67%), Postives = 69/102 (67.65%), Query Frame = 0 

Query: 1   MELMKAGDVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEVQQQQQQ 60
           MELMKAGDV                                EEEEEEEEEEE VQQQQQQ
Sbjct: 1   MELMKAGDV--------------------------------EEEEEEEEEEEVVQQQQQQ 60

Query: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCV+SGDKAL
Sbjct: 61  QQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVDSGDKAL 70

The following BLAST results are available for this feature:
BLAST of CmoCh15G006820 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FIN14.0e-16100.00two-component response regulator ORR9-like isoform X2 OS=Cucurbita moschata OX=3... [more]
A0A6J1FDT64.0e-1668.63two-component response regulator ORR9-like isoform X1 OS=Cucurbita moschata OX=3... [more]
A0A6J1FDU51.4e-1362.75two-component response regulator ORR9-like isoform X3 OS=Cucurbita moschata OX=3... [more]
A0A6J1JYN51.3e-1161.76two-component response regulator ORR9-like OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
BLAST of CmoCh15G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938352.18.3e-1668.63two-component response regulator ORR9-like isoform X1 [Cucurbita moschata][more]
XP_022938353.18.3e-16100.00two-component response regulator ORR9-like isoform X2 [Cucurbita moschata][more]
XP_023550891.11.2e-1466.67two-component response regulator ARR8-like isoform X1 [Cucurbita pepo subsp. pep... [more]
XP_023550892.11.2e-1466.67two-component response regulator ARR9-like isoform X2 [Cucurbita pepo subsp. pep... [more]
XP_023550893.11.2e-1466.67two-component response regulator ARR9-like isoform X3 [Cucurbita pepo subsp. pep... [more]
BLAST of CmoCh15G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..64
NoneNo IPR availableGENE3D3.40.50.2300coord: 55..104
e-value: 3.9E-7
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availablePANTHERPTHR43874:SF96TWO-COMPONENT RESPONSE REGULATOR ORR4coord: 47..103
NoneNo IPR availablePANTHERPTHR43874TWO-COMPONENT RESPONSE REGULATORcoord: 47..103
IPR001789Signal transduction response regulator, receiver domainPROSITEPS50110RESPONSE_REGULATORYcoord: 66..104
score: 11.678153
IPR011006CheY-like superfamilySUPERFAMILY52172CheY-likecoord: 65..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006820.1CmoCh15G006820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0016310 phosphorylation
molecular_function GO:0016301 kinase activity